####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 70 ( 280), selected 70 , name T0521AL396_1-D2 # Molecule2: number of CA atoms 70 ( 583), selected 70 , name T0521-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0521AL396_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 65 38 - 102 4.97 6.32 LCS_AVERAGE: 89.49 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 38 - 58 1.90 6.80 LCS_AVERAGE: 19.24 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 38 - 54 0.61 7.24 LCS_AVERAGE: 13.71 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 70 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 35 N 35 3 3 28 2 3 3 3 4 4 5 5 12 13 15 25 29 31 35 37 39 40 46 50 LCS_GDT H 36 H 36 3 3 29 2 3 3 4 4 8 11 14 16 18 34 36 41 43 46 56 58 61 64 65 LCS_GDT I 37 I 37 3 3 29 0 3 3 3 4 7 8 13 15 21 22 25 27 31 46 56 56 61 62 65 LCS_GDT K 38 K 38 17 21 65 9 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT Y 39 Y 39 17 21 65 9 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT I 40 I 40 17 21 65 9 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT N 41 N 41 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT E 42 E 42 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT L 43 L 43 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT F 44 F 44 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT Y 45 Y 45 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT K 46 K 46 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT L 47 L 47 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT D 48 D 48 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT T 49 T 49 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT N 50 N 50 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT H 51 H 51 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT N 52 N 52 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT G 53 G 53 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT S 54 S 54 17 21 65 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT L 55 L 55 16 21 65 1 2 2 14 21 32 38 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT S 56 S 56 6 21 65 5 5 9 9 20 25 34 41 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT H 57 H 57 6 21 65 5 5 9 11 21 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT R 58 R 58 7 21 65 5 5 11 18 30 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT E 59 E 59 7 9 65 6 6 9 9 9 9 16 28 40 50 54 58 59 61 62 63 64 65 66 66 LCS_GDT I 60 I 60 7 9 65 6 6 9 9 9 11 17 24 37 44 54 58 59 61 62 63 64 65 66 66 LCS_GDT Y 61 Y 61 7 9 65 6 6 9 9 11 24 39 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT T 62 T 62 7 9 65 6 6 9 9 9 15 37 42 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT V 63 V 63 7 9 65 6 6 9 9 9 13 19 28 35 41 53 58 59 61 62 63 64 65 66 66 LCS_GDT L 64 L 64 7 9 65 6 6 9 9 9 9 9 10 11 27 41 45 49 56 59 63 64 65 66 66 LCS_GDT A 65 A 65 4 4 65 4 4 4 4 4 5 6 8 10 11 14 26 29 32 42 50 54 62 66 66 LCS_GDT S 66 S 66 4 4 65 4 4 4 4 4 5 6 8 10 11 13 16 23 24 32 34 39 43 54 57 LCS_GDT V 67 V 67 4 4 65 4 4 4 4 5 8 10 14 18 22 25 29 39 44 48 53 60 65 66 66 LCS_GDT G 68 G 68 4 4 65 4 4 4 4 8 11 16 25 33 38 43 51 59 61 62 63 64 65 66 66 LCS_GDT I 69 I 69 3 4 65 3 3 3 3 5 10 13 18 24 35 41 46 59 61 62 63 64 65 66 66 LCS_GDT K 70 K 70 4 14 65 3 3 5 12 17 28 31 36 47 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT K 71 K 71 12 14 65 11 12 15 25 31 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT W 72 W 72 12 14 65 11 12 13 24 30 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT D 73 D 73 12 14 65 11 12 17 26 31 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT I 74 I 74 12 14 65 11 12 22 27 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT N 75 N 75 12 14 65 11 12 21 27 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT R 76 R 76 12 14 65 11 12 21 27 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT I 77 I 77 12 14 65 11 13 22 27 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT L 78 L 78 12 14 65 11 12 12 25 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT Q 79 Q 79 12 14 65 11 12 14 27 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT A 80 A 80 12 14 65 11 12 22 27 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT L 81 L 81 12 14 65 11 12 12 14 30 34 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT D 82 D 82 12 14 65 4 12 12 14 21 30 40 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT I 83 I 83 4 14 65 4 4 5 6 7 11 14 35 45 48 53 58 59 61 62 63 64 65 66 66 LCS_GDT N 84 N 84 4 5 65 4 4 5 9 13 18 31 43 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT D 85 D 85 4 5 65 3 4 5 19 30 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT R 86 R 86 4 13 65 3 11 19 27 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT G 87 G 87 3 13 65 3 4 6 23 29 30 35 44 47 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT N 88 N 88 8 13 65 7 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT I 89 I 89 8 13 65 7 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT T 90 T 90 8 13 65 7 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT Y 91 Y 91 8 13 65 7 13 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT T 92 T 92 8 13 65 7 10 19 28 29 33 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT E 93 E 93 8 13 65 7 10 19 28 29 33 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT F 94 F 94 8 13 65 7 10 19 28 29 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT M 95 M 95 8 13 65 4 7 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT A 96 A 96 7 13 65 7 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT G 97 G 97 7 13 65 4 7 18 28 29 33 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT C 98 C 98 7 13 65 5 16 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT Y 99 Y 99 7 13 65 4 7 10 20 28 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 LCS_GDT R 100 R 100 3 11 65 3 3 4 11 15 23 30 34 41 49 53 56 59 60 62 63 64 65 66 66 LCS_GDT W 101 W 101 4 5 65 3 4 4 4 5 6 10 24 31 44 54 58 59 61 62 63 64 65 66 66 LCS_GDT K 102 K 102 4 5 65 3 4 4 4 5 5 9 12 31 44 54 58 59 61 62 63 64 65 66 66 LCS_GDT N 103 N 103 4 5 37 3 4 4 4 5 5 10 12 16 33 44 54 59 61 62 63 64 65 66 66 LCS_GDT I 104 I 104 4 5 37 3 4 4 4 5 6 9 11 12 25 27 36 42 52 62 63 64 65 66 66 LCS_AVERAGE LCS_A: 40.82 ( 13.71 19.24 89.49 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 19 23 28 32 35 42 45 50 52 54 58 59 61 62 63 64 65 66 66 GDT PERCENT_AT 17.14 27.14 32.86 40.00 45.71 50.00 60.00 64.29 71.43 74.29 77.14 82.86 84.29 87.14 88.57 90.00 91.43 92.86 94.29 94.29 GDT RMS_LOCAL 0.30 0.64 0.80 1.13 1.54 1.72 2.17 2.29 2.62 2.81 3.13 3.47 3.57 4.02 4.09 4.31 4.41 4.67 4.88 4.88 GDT RMS_ALL_AT 6.63 7.27 7.49 7.63 6.84 6.74 6.75 6.76 6.75 6.65 6.48 6.48 6.39 6.30 6.25 6.20 6.22 6.20 6.20 6.20 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 35 N 35 21.015 4 0.613 0.613 21.015 0.000 0.000 LGA H 36 H 36 15.103 6 0.576 0.576 17.099 0.000 0.000 LGA I 37 I 37 13.719 4 0.578 0.578 14.090 0.000 0.000 LGA K 38 K 38 1.181 5 0.087 0.087 1.439 85.952 38.201 LGA Y 39 Y 39 1.017 8 0.046 0.046 1.112 85.952 28.651 LGA I 40 I 40 1.096 4 0.038 0.038 1.225 85.952 42.976 LGA N 41 N 41 0.868 4 0.043 0.043 1.319 90.595 45.298 LGA E 42 E 42 0.917 5 0.012 0.012 1.114 88.214 39.206 LGA L 43 L 43 0.902 4 0.065 0.065 1.463 85.952 42.976 LGA F 44 F 44 1.163 7 0.020 0.020 1.453 83.690 30.433 LGA Y 45 Y 45 1.439 8 0.072 0.072 1.439 81.429 27.143 LGA K 46 K 46 1.533 5 0.046 0.046 1.735 75.000 33.333 LGA L 47 L 47 1.537 4 0.067 0.067 1.815 72.857 36.429 LGA D 48 D 48 1.423 4 0.102 0.102 1.581 77.143 38.571 LGA T 49 T 49 1.987 3 0.082 0.082 1.987 72.857 41.633 LGA N 50 N 50 0.881 4 0.025 0.025 1.240 88.214 44.107 LGA H 51 H 51 1.032 6 0.110 0.110 1.357 83.690 33.476 LGA N 52 N 52 0.474 4 0.051 0.051 0.611 97.619 48.810 LGA G 53 G 53 0.657 0 0.011 0.011 0.679 90.476 90.476 LGA S 54 S 54 0.637 2 0.104 0.104 0.803 90.476 60.317 LGA L 55 L 55 3.948 4 0.155 0.155 3.948 46.667 23.333 LGA S 56 S 56 5.023 2 0.655 0.655 5.551 26.548 17.698 LGA H 57 H 57 4.408 6 0.044 0.044 4.408 45.119 18.048 LGA R 58 R 58 3.280 7 0.092 0.092 3.280 55.476 20.173 LGA E 59 E 59 6.230 5 0.141 0.141 7.547 19.643 8.730 LGA I 60 I 60 7.049 4 0.031 0.031 7.454 14.643 7.321 LGA Y 61 Y 61 4.789 8 0.050 0.050 4.821 32.857 10.952 LGA T 62 T 62 4.849 3 0.026 0.026 6.724 26.310 15.034 LGA V 63 V 63 9.428 3 0.032 0.032 11.118 2.976 1.701 LGA L 64 L 64 10.559 4 0.023 0.023 10.859 0.476 0.238 LGA A 65 A 65 15.294 1 0.027 0.027 16.883 0.000 0.000 LGA S 66 S 66 17.886 2 0.151 0.151 17.886 0.000 0.000 LGA V 67 V 67 15.806 3 0.189 0.189 16.471 0.000 0.000 LGA G 68 G 68 12.352 0 0.211 0.211 13.264 0.000 0.000 LGA I 69 I 69 12.507 4 0.641 0.641 12.901 0.476 0.238 LGA K 70 K 70 6.610 5 0.602 0.602 8.917 21.190 9.418 LGA K 71 K 71 3.155 5 0.044 0.044 3.425 51.786 23.016 LGA W 72 W 72 3.591 10 0.029 0.029 3.591 48.452 13.844 LGA D 73 D 73 2.789 4 0.044 0.044 3.054 61.190 30.595 LGA I 74 I 74 1.512 4 0.017 0.017 2.021 75.119 37.560 LGA N 75 N 75 1.591 4 0.075 0.075 1.613 75.000 37.500 LGA R 76 R 76 1.418 7 0.067 0.067 1.545 79.286 28.831 LGA I 77 I 77 1.933 4 0.021 0.021 2.398 70.833 35.417 LGA L 78 L 78 2.407 4 0.113 0.113 2.693 64.881 32.440 LGA Q 79 Q 79 2.139 5 0.165 0.165 2.911 62.857 27.937 LGA A 80 A 80 2.025 1 0.062 0.062 3.320 61.190 48.952 LGA L 81 L 81 3.383 4 0.260 0.260 4.359 46.905 23.452 LGA D 82 D 82 3.956 4 0.365 0.365 4.602 42.024 21.012 LGA I 83 I 83 6.332 4 0.568 0.568 7.712 18.214 9.107 LGA N 84 N 84 4.977 4 0.650 0.650 6.062 27.857 13.929 LGA D 85 D 85 3.697 4 0.461 0.461 4.437 43.452 21.726 LGA R 86 R 86 1.991 7 0.176 0.176 2.286 82.024 29.827 LGA G 87 G 87 4.529 0 0.080 0.080 5.303 41.429 41.429 LGA N 88 N 88 2.114 4 0.276 0.276 2.114 66.786 33.393 LGA I 89 I 89 1.370 4 0.075 0.075 1.413 85.952 42.976 LGA T 90 T 90 1.018 3 0.110 0.110 1.762 79.286 45.306 LGA Y 91 Y 91 1.569 8 0.052 0.052 2.661 69.048 23.016 LGA T 92 T 92 3.608 3 0.067 0.067 4.540 43.810 25.034 LGA E 93 E 93 3.533 5 0.169 0.169 3.533 46.667 20.741 LGA F 94 F 94 2.986 7 0.044 0.044 3.226 57.262 20.823 LGA M 95 M 95 2.354 4 0.068 0.068 2.659 64.881 32.440 LGA A 96 A 96 2.555 1 0.024 0.024 2.597 59.048 47.238 LGA G 97 G 97 3.345 0 0.146 0.146 3.615 48.333 48.333 LGA C 98 C 98 2.467 2 0.111 0.111 4.044 54.167 36.111 LGA Y 99 Y 99 3.562 8 0.626 0.626 4.321 46.905 15.635 LGA R 100 R 100 7.720 7 0.601 0.601 9.262 7.262 2.641 LGA W 101 W 101 8.234 10 0.159 0.159 10.026 4.405 1.259 LGA K 102 K 102 7.468 5 0.607 0.607 8.932 6.905 3.069 LGA N 103 N 103 10.184 4 0.304 0.304 13.544 0.714 0.357 LGA I 104 I 104 14.122 4 0.633 0.633 16.454 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 70 280 280 100.00 583 280 48.03 70 SUMMARY(RMSD_GDC): 6.069 6.000 6.000 48.891 24.712 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 70 70 4.0 45 2.29 55.357 48.583 1.882 LGA_LOCAL RMSD: 2.290 Number of atoms: 45 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 6.763 Number of assigned atoms: 70 Std_ASGN_ATOMS RMSD: 6.069 Standard rmsd on all 70 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.475946 * X + 0.622343 * Y + -0.621422 * Z + -59.597298 Y_new = 0.307517 * X + -0.779744 * Y + -0.545373 * Z + -25.100416 Z_new = -0.823959 * X + 0.068471 * Y + -0.562497 * Z + 54.985367 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.573640 0.968363 3.020462 [DEG: 32.8672 55.4831 173.0597 ] ZXZ: -0.850483 2.168200 -1.487887 [DEG: -48.7291 124.2287 -85.2496 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0521AL396_1-D2 REMARK 2: T0521-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0521AL396_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 70 70 4.0 45 2.29 48.583 6.07 REMARK ---------------------------------------------------------- MOLECULE T0521AL396_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2hpk_A ATOM 85 N ASN 35 -27.507 -26.048 3.366 1.00 0.00 N ATOM 86 CA ASN 35 -28.079 -26.656 2.177 1.00 0.00 C ATOM 87 C ASN 35 -27.608 -28.070 2.098 1.00 0.00 C ATOM 88 O ASN 35 -26.413 -28.338 2.239 1.00 0.00 O ATOM 89 N HIS 36 -28.556 -28.992 1.941 1.00 0.00 N ATOM 90 CA HIS 36 -28.213 -30.377 1.692 1.00 0.00 C ATOM 91 C HIS 36 -27.463 -30.541 0.347 1.00 0.00 C ATOM 92 O HIS 36 -27.901 -30.055 -0.689 1.00 0.00 O ATOM 93 N ILE 37 -26.367 -31.282 0.397 1.00 0.00 N ATOM 94 CA ILE 37 -25.615 -31.629 -0.811 1.00 0.00 C ATOM 95 C ILE 37 -26.118 -32.902 -1.502 1.00 0.00 C ATOM 96 O ILE 37 -25.753 -34.018 -1.113 1.00 0.00 O ATOM 97 N LYS 38 -28.724 -47.757 4.299 1.00 0.00 N ATOM 98 CA LYS 38 -29.852 -48.675 4.296 1.00 0.00 C ATOM 99 C LYS 38 -30.533 -48.751 5.665 1.00 0.00 C ATOM 100 O LYS 38 -31.720 -49.010 5.730 1.00 0.00 O ATOM 101 N TYR 39 -29.801 -48.509 6.750 1.00 0.00 N ATOM 102 CA TYR 39 -30.431 -48.473 8.080 1.00 0.00 C ATOM 103 C TYR 39 -31.442 -47.305 8.193 1.00 0.00 C ATOM 104 O TYR 39 -32.564 -47.477 8.689 1.00 0.00 O ATOM 105 N ILE 40 -31.071 -46.146 7.662 1.00 0.00 N ATOM 106 CA ILE 40 -32.002 -45.017 7.615 1.00 0.00 C ATOM 107 C ILE 40 -33.270 -45.334 6.784 1.00 0.00 C ATOM 108 O ILE 40 -34.362 -45.035 7.242 1.00 0.00 O ATOM 109 N ASN 41 -33.145 -45.990 5.623 1.00 0.00 N ATOM 110 CA ASN 41 -34.326 -46.310 4.794 1.00 0.00 C ATOM 111 C ASN 41 -35.251 -47.345 5.415 1.00 0.00 C ATOM 112 O ASN 41 -36.460 -47.249 5.251 1.00 0.00 O ATOM 113 N GLU 42 -34.683 -48.317 6.143 1.00 0.00 N ATOM 114 CA GLU 42 -35.463 -49.264 6.947 1.00 0.00 C ATOM 115 C GLU 42 -36.412 -48.534 7.882 1.00 0.00 C ATOM 116 O GLU 42 -37.527 -49.017 8.144 1.00 0.00 O ATOM 117 N LEU 43 -35.951 -47.417 8.437 1.00 0.00 N ATOM 118 CA LEU 43 -36.823 -46.589 9.285 1.00 0.00 C ATOM 119 C LEU 43 -38.015 -45.974 8.539 1.00 0.00 C ATOM 120 O LEU 43 -39.162 -45.960 9.073 1.00 0.00 O ATOM 121 N PHE 44 -37.766 -45.439 7.338 1.00 0.00 N ATOM 122 CA PHE 44 -38.838 -44.894 6.522 1.00 0.00 C ATOM 123 C PHE 44 -39.863 -45.988 6.225 1.00 0.00 C ATOM 124 O PHE 44 -41.095 -45.754 6.269 1.00 0.00 O ATOM 125 N TYR 45 -39.348 -47.151 5.841 1.00 0.00 N ATOM 126 CA TYR 45 -40.218 -48.242 5.417 1.00 0.00 C ATOM 127 C TYR 45 -41.047 -48.835 6.562 1.00 0.00 C ATOM 128 O TYR 45 -42.162 -49.324 6.323 1.00 0.00 O ATOM 129 N LYS 46 -40.513 -48.776 7.774 1.00 0.00 N ATOM 130 CA LYS 46 -41.337 -49.016 8.995 1.00 0.00 C ATOM 131 C LYS 46 -42.481 -47.990 9.275 1.00 0.00 C ATOM 132 O LYS 46 -43.579 -48.355 9.686 1.00 0.00 O ATOM 133 N LEU 47 -42.210 -46.709 9.074 1.00 0.00 N ATOM 134 CA LEU 47 -43.253 -45.696 9.180 1.00 0.00 C ATOM 135 C LEU 47 -44.262 -45.703 8.060 1.00 0.00 C ATOM 136 O LEU 47 -45.367 -45.156 8.206 1.00 0.00 O ATOM 137 N ASP 48 -43.858 -46.227 6.900 1.00 0.00 N ATOM 138 CA ASP 48 -44.698 -46.164 5.680 1.00 0.00 C ATOM 139 C ASP 48 -45.600 -47.365 5.783 1.00 0.00 C ATOM 140 O ASP 48 -45.267 -48.450 5.256 1.00 0.00 O ATOM 141 N THR 49 -46.718 -47.213 6.500 1.00 0.00 N ATOM 142 CA THR 49 -47.532 -48.347 6.911 1.00 0.00 C ATOM 143 C THR 49 -48.178 -49.134 5.780 1.00 0.00 C ATOM 144 O THR 49 -48.358 -50.347 5.917 1.00 0.00 O ATOM 145 N ASN 50 -48.546 -48.460 4.688 1.00 0.00 N ATOM 146 CA ASN 50 -49.110 -49.157 3.520 1.00 0.00 C ATOM 147 C ASN 50 -48.054 -49.465 2.415 1.00 0.00 C ATOM 148 O ASN 50 -48.394 -50.000 1.370 1.00 0.00 O ATOM 149 N HIS 51 -46.812 -49.108 2.648 1.00 0.00 N ATOM 150 CA HIS 51 -45.725 -49.362 1.698 1.00 0.00 C ATOM 151 C HIS 51 -45.908 -48.673 0.319 1.00 0.00 C ATOM 152 O HIS 51 -45.382 -49.142 -0.665 1.00 0.00 O ATOM 153 N ASN 52 -46.636 -47.560 0.256 1.00 0.00 N ATOM 154 CA ASN 52 -46.789 -46.800 -1.004 1.00 0.00 C ATOM 155 C ASN 52 -45.621 -45.831 -1.362 1.00 0.00 C ATOM 156 O ASN 52 -45.718 -45.068 -2.325 1.00 0.00 O ATOM 157 N GLY 53 -44.562 -45.815 -0.564 1.00 0.00 N ATOM 158 CA GLY 53 -43.420 -44.954 -0.845 1.00 0.00 C ATOM 159 C GLY 53 -43.535 -43.539 -0.321 1.00 0.00 C ATOM 160 O GLY 53 -42.660 -42.702 -0.610 1.00 0.00 O ATOM 161 N SER 54 -44.577 -43.283 0.481 1.00 0.00 N ATOM 162 CA SER 54 -44.772 -41.962 1.123 1.00 0.00 C ATOM 163 C SER 54 -45.086 -42.120 2.628 1.00 0.00 C ATOM 164 O SER 54 -45.834 -43.017 2.990 1.00 0.00 O ATOM 165 N LEU 55 -47.199 -40.316 5.495 1.00 0.00 N ATOM 166 CA LEU 55 -48.230 -39.332 5.712 1.00 0.00 C ATOM 167 C LEU 55 -48.490 -39.131 7.206 1.00 0.00 C ATOM 168 O LEU 55 -48.191 -40.000 8.003 1.00 0.00 O ATOM 169 N SER 56 -51.324 -39.179 8.971 1.00 0.00 N ATOM 170 CA SER 56 -52.185 -40.189 9.605 1.00 0.00 C ATOM 171 C SER 56 -51.451 -41.483 9.946 1.00 0.00 C ATOM 172 O SER 56 -51.813 -42.187 10.925 1.00 0.00 O ATOM 173 N HIS 57 -50.383 -41.772 9.200 1.00 0.00 N ATOM 174 CA HIS 57 -49.541 -42.937 9.469 1.00 0.00 C ATOM 175 C HIS 57 -48.688 -42.764 10.695 1.00 0.00 C ATOM 176 O HIS 57 -48.558 -43.718 11.455 1.00 0.00 O ATOM 177 N ARG 58 -48.092 -41.570 10.885 1.00 0.00 N ATOM 178 CA ARG 58 -47.294 -41.311 12.061 1.00 0.00 C ATOM 179 C ARG 58 -48.141 -41.235 13.339 1.00 0.00 C ATOM 180 O ARG 58 -47.631 -41.525 14.408 1.00 0.00 O ATOM 181 N GLU 59 -49.409 -40.828 13.228 1.00 0.00 N ATOM 182 CA GLU 59 -50.231 -40.699 14.442 1.00 0.00 C ATOM 183 C GLU 59 -50.808 -42.012 14.883 1.00 0.00 C ATOM 184 O GLU 59 -51.331 -42.134 15.985 1.00 0.00 O ATOM 185 N ILE 60 -50.628 -43.031 14.042 1.00 0.00 N ATOM 186 CA ILE 60 -50.894 -44.400 14.388 1.00 0.00 C ATOM 187 C ILE 60 -50.169 -44.832 15.710 1.00 0.00 C ATOM 188 O ILE 60 -50.778 -45.500 16.570 1.00 0.00 O ATOM 189 N TYR 61 -48.888 -44.458 15.855 1.00 0.00 N ATOM 190 CA TYR 61 -48.080 -44.859 16.992 1.00 0.00 C ATOM 191 C TYR 61 -48.568 -44.324 18.401 1.00 0.00 C ATOM 192 O TYR 61 -48.727 -45.117 19.332 1.00 0.00 O ATOM 193 N THR 62 -48.773 -43.003 18.557 1.00 0.00 N ATOM 194 CA THR 62 -49.397 -42.505 19.824 1.00 0.00 C ATOM 195 C THR 62 -50.809 -42.988 20.020 1.00 0.00 C ATOM 196 O THR 62 -51.229 -43.167 21.167 1.00 0.00 O ATOM 197 N VAL 63 -51.550 -43.195 18.936 1.00 0.00 N ATOM 198 CA VAL 63 -52.869 -43.819 19.043 1.00 0.00 C ATOM 199 C VAL 63 -52.808 -45.260 19.640 1.00 0.00 C ATOM 200 O VAL 63 -53.632 -45.635 20.488 1.00 0.00 O ATOM 201 N LEU 64 -51.815 -46.058 19.250 1.00 0.00 N ATOM 202 CA LEU 64 -51.681 -47.362 19.845 1.00 0.00 C ATOM 203 C LEU 64 -51.199 -47.279 21.309 1.00 0.00 C ATOM 204 O LEU 64 -51.638 -48.052 22.153 1.00 0.00 O ATOM 205 N ALA 65 -56.605 -37.243 29.495 1.00 0.00 N ATOM 206 CA ALA 65 -56.866 -36.615 28.186 1.00 0.00 C ATOM 207 C ALA 65 -55.809 -35.565 27.843 1.00 0.00 C ATOM 208 O ALA 65 -55.384 -35.465 26.673 1.00 0.00 O ATOM 209 N SER 66 -55.401 -34.778 28.835 1.00 0.00 N ATOM 210 CA SER 66 -54.378 -33.757 28.604 1.00 0.00 C ATOM 211 C SER 66 -53.018 -34.353 28.208 1.00 0.00 C ATOM 212 O SER 66 -52.290 -33.779 27.357 1.00 0.00 O ATOM 213 N VAL 67 -52.627 -35.439 28.878 1.00 0.00 N ATOM 214 CA VAL 67 -51.353 -36.099 28.511 1.00 0.00 C ATOM 215 C VAL 67 -51.391 -36.715 27.125 1.00 0.00 C ATOM 216 O VAL 67 -50.367 -36.706 26.383 1.00 0.00 O ATOM 217 N GLY 68 -52.515 -37.351 26.807 1.00 0.00 N ATOM 218 CA GLY 68 -52.659 -37.965 25.489 1.00 0.00 C ATOM 219 C GLY 68 -52.573 -36.923 24.427 1.00 0.00 C ATOM 220 O GLY 68 -51.937 -37.135 23.422 1.00 0.00 O ATOM 221 N ILE 69 -53.188 -35.756 24.664 1.00 0.00 N ATOM 222 CA ILE 69 -53.165 -34.698 23.649 1.00 0.00 C ATOM 223 C ILE 69 -51.764 -34.104 23.557 1.00 0.00 C ATOM 224 O ILE 69 -51.306 -33.767 22.434 1.00 0.00 O ATOM 225 N LYS 70 -51.068 -33.965 24.705 1.00 0.00 N ATOM 226 CA LYS 70 -49.723 -33.393 24.668 1.00 0.00 C ATOM 227 C LYS 70 -48.813 -34.306 23.829 1.00 0.00 C ATOM 228 O LYS 70 -48.002 -33.816 23.065 1.00 0.00 O ATOM 229 N LYS 71 -49.929 -36.577 21.325 1.00 0.00 N ATOM 230 CA LYS 71 -50.338 -36.527 19.917 1.00 0.00 C ATOM 231 C LYS 71 -49.774 -35.264 19.210 1.00 0.00 C ATOM 232 O LYS 71 -49.284 -35.326 18.052 1.00 0.00 O ATOM 233 N TRP 72 -49.848 -34.143 19.921 1.00 0.00 N ATOM 234 CA TRP 72 -49.369 -32.874 19.382 1.00 0.00 C ATOM 235 C TRP 72 -47.854 -32.845 19.268 1.00 0.00 C ATOM 236 O TRP 72 -47.349 -32.347 18.282 1.00 0.00 O ATOM 237 N ASP 73 -47.126 -33.380 20.257 1.00 0.00 N ATOM 238 CA ASP 73 -45.671 -33.456 20.125 1.00 0.00 C ATOM 239 C ASP 73 -45.230 -34.382 18.948 1.00 0.00 C ATOM 240 O ASP 73 -44.248 -34.083 18.245 1.00 0.00 O ATOM 241 N ILE 74 -45.965 -35.475 18.721 1.00 0.00 N ATOM 242 CA ILE 74 -45.665 -36.397 17.587 1.00 0.00 C ATOM 243 C ILE 74 -45.954 -35.641 16.273 1.00 0.00 C ATOM 244 O ILE 74 -45.160 -35.682 15.355 1.00 0.00 O ATOM 245 N ASN 75 -47.075 -34.929 16.222 1.00 0.00 N ATOM 246 CA ASN 75 -47.418 -34.111 15.064 1.00 0.00 C ATOM 247 C ASN 75 -46.313 -33.101 14.720 1.00 0.00 C ATOM 248 O ASN 75 -45.862 -33.041 13.553 1.00 0.00 O ATOM 249 N ARG 76 -45.960 -32.267 15.702 1.00 0.00 N ATOM 250 CA ARG 76 -44.877 -31.274 15.550 1.00 0.00 C ATOM 251 C ARG 76 -43.582 -31.966 15.119 1.00 0.00 C ATOM 252 O ARG 76 -42.908 -31.553 14.193 1.00 0.00 O ATOM 253 N ILE 77 -43.197 -32.998 15.848 1.00 0.00 N ATOM 254 CA ILE 77 -41.943 -33.696 15.515 1.00 0.00 C ATOM 255 C ILE 77 -41.922 -34.119 14.060 1.00 0.00 C ATOM 256 O ILE 77 -40.958 -33.822 13.339 1.00 0.00 O ATOM 257 N LEU 78 -42.949 -34.810 13.602 1.00 0.00 N ATOM 258 CA LEU 78 -42.855 -35.321 12.223 1.00 0.00 C ATOM 259 C LEU 78 -43.085 -34.277 11.176 1.00 0.00 C ATOM 260 O LEU 78 -42.555 -34.409 10.066 1.00 0.00 O ATOM 261 N GLN 79 -43.804 -33.206 11.520 1.00 0.00 N ATOM 262 CA GLN 79 -43.892 -32.081 10.565 1.00 0.00 C ATOM 263 C GLN 79 -42.479 -31.532 10.332 1.00 0.00 C ATOM 264 O GLN 79 -42.045 -31.337 9.207 1.00 0.00 O ATOM 265 N ALA 80 -41.728 -31.372 11.402 1.00 0.00 N ATOM 266 CA ALA 80 -40.339 -30.898 11.265 1.00 0.00 C ATOM 267 C ALA 80 -39.404 -31.937 10.637 1.00 0.00 C ATOM 268 O ALA 80 -38.455 -31.561 9.961 1.00 0.00 O ATOM 269 N LEU 81 -39.690 -33.230 10.831 1.00 0.00 N ATOM 270 CA LEU 81 -38.997 -34.296 10.074 1.00 0.00 C ATOM 271 C LEU 81 -39.374 -34.394 8.603 1.00 0.00 C ATOM 272 O LEU 81 -38.896 -35.305 7.911 1.00 0.00 O ATOM 273 N ASP 82 -40.229 -33.479 8.136 1.00 0.00 N ATOM 274 CA ASP 82 -40.545 -33.353 6.732 1.00 0.00 C ATOM 275 C ASP 82 -41.897 -33.862 6.268 1.00 0.00 C ATOM 276 O ASP 82 -42.178 -33.797 5.074 1.00 0.00 O ATOM 277 N ILE 83 -42.729 -34.370 7.184 1.00 0.00 N ATOM 278 CA ILE 83 -44.090 -34.838 6.808 1.00 0.00 C ATOM 279 C ILE 83 -45.046 -33.657 6.653 1.00 0.00 C ATOM 280 O ILE 83 -45.622 -33.132 7.630 1.00 0.00 O ATOM 281 N ASN 84 -45.248 -33.246 5.404 1.00 0.00 N ATOM 282 CA ASN 84 -46.088 -32.093 5.096 1.00 0.00 C ATOM 283 C ASN 84 -47.575 -32.442 5.202 1.00 0.00 C ATOM 284 O ASN 84 -47.957 -33.555 4.899 1.00 0.00 O ATOM 285 N ASP 85 -48.404 -31.492 5.669 1.00 0.00 N ATOM 286 CA ASP 85 -49.817 -31.801 5.947 1.00 0.00 C ATOM 287 C ASP 85 -50.577 -32.459 4.810 1.00 0.00 C ATOM 288 O ASP 85 -51.374 -33.397 5.078 1.00 0.00 O ATOM 289 N ARG 86 -50.341 -32.002 3.574 1.00 0.00 N ATOM 290 CA ARG 86 -51.015 -32.586 2.409 1.00 0.00 C ATOM 291 C ARG 86 -50.135 -33.529 1.610 1.00 0.00 C ATOM 292 O ARG 86 -50.600 -34.570 1.166 1.00 0.00 O ATOM 293 N GLY 87 -48.884 -33.158 1.382 1.00 0.00 N ATOM 294 CA GLY 87 -48.089 -33.920 0.472 1.00 0.00 C ATOM 295 C GLY 87 -47.338 -35.061 1.123 1.00 0.00 C ATOM 296 O GLY 87 -46.849 -35.949 0.419 1.00 0.00 O ATOM 297 N ASN 88 -47.257 -35.044 2.461 1.00 0.00 N ATOM 298 CA ASN 88 -46.542 -36.104 3.181 1.00 0.00 C ATOM 299 C ASN 88 -45.049 -36.001 2.925 1.00 0.00 C ATOM 300 O ASN 88 -44.553 -34.898 2.670 1.00 0.00 O ATOM 301 N ILE 89 -44.337 -37.139 3.019 1.00 0.00 N ATOM 302 CA ILE 89 -42.906 -37.198 2.755 1.00 0.00 C ATOM 303 C ILE 89 -42.570 -38.386 1.864 1.00 0.00 C ATOM 304 O ILE 89 -42.728 -39.562 2.262 1.00 0.00 O ATOM 305 N THR 90 -42.063 -38.102 0.671 1.00 0.00 N ATOM 306 CA THR 90 -41.539 -39.186 -0.197 1.00 0.00 C ATOM 307 C THR 90 -40.239 -39.872 0.273 1.00 0.00 C ATOM 308 O THR 90 -39.323 -39.276 0.876 1.00 0.00 O ATOM 309 N TYR 91 -40.161 -41.149 -0.042 1.00 0.00 N ATOM 310 CA TYR 91 -38.991 -41.961 0.269 1.00 0.00 C ATOM 311 C TYR 91 -37.716 -41.304 -0.305 1.00 0.00 C ATOM 312 O TYR 91 -36.646 -41.358 0.309 1.00 0.00 O ATOM 313 N THR 92 -37.891 -40.646 -1.450 1.00 0.00 N ATOM 314 CA THR 92 -36.838 -40.009 -2.266 1.00 0.00 C ATOM 315 C THR 92 -36.291 -38.830 -1.477 1.00 0.00 C ATOM 316 O THR 92 -35.143 -38.472 -1.645 1.00 0.00 O ATOM 317 N GLU 93 -37.121 -38.266 -0.598 1.00 0.00 N ATOM 318 CA GLU 93 -36.743 -37.110 0.240 1.00 0.00 C ATOM 319 C GLU 93 -36.382 -37.440 1.681 1.00 0.00 C ATOM 320 O GLU 93 -35.968 -36.555 2.439 1.00 0.00 O ATOM 321 N PHE 94 -36.492 -38.712 2.060 1.00 0.00 N ATOM 322 CA PHE 94 -36.275 -39.130 3.461 1.00 0.00 C ATOM 323 C PHE 94 -34.925 -38.740 3.988 1.00 0.00 C ATOM 324 O PHE 94 -34.822 -38.191 5.066 1.00 0.00 O ATOM 325 N MET 95 -33.871 -39.020 3.228 1.00 0.00 N ATOM 326 CA MET 95 -32.519 -38.760 3.742 1.00 0.00 C ATOM 327 C MET 95 -32.271 -37.261 3.975 1.00 0.00 C ATOM 328 O MET 95 -31.759 -36.874 5.019 1.00 0.00 O ATOM 329 N ALA 96 -32.606 -36.437 2.997 1.00 0.00 N ATOM 330 CA ALA 96 -32.379 -35.022 3.110 1.00 0.00 C ATOM 331 C ALA 96 -33.268 -34.426 4.219 1.00 0.00 C ATOM 332 O ALA 96 -32.820 -33.551 4.920 1.00 0.00 O ATOM 333 N GLY 97 -34.509 -34.927 4.364 1.00 0.00 N ATOM 334 CA GLY 97 -35.409 -34.543 5.501 1.00 0.00 C ATOM 335 C GLY 97 -34.764 -34.812 6.861 1.00 0.00 C ATOM 336 O GLY 97 -34.837 -33.984 7.727 1.00 0.00 O ATOM 337 N CYS 98 -34.127 -35.969 7.045 1.00 0.00 N ATOM 338 CA CYS 98 -33.328 -36.238 8.252 1.00 0.00 C ATOM 339 C CYS 98 -32.122 -35.289 8.506 1.00 0.00 C ATOM 340 O CYS 98 -31.887 -34.841 9.656 1.00 0.00 O ATOM 341 N TYR 99 -31.362 -34.977 7.444 1.00 0.00 N ATOM 342 CA TYR 99 -30.177 -34.066 7.569 1.00 0.00 C ATOM 343 C TYR 99 -30.544 -32.628 7.902 1.00 0.00 C ATOM 344 O TYR 99 -29.864 -31.959 8.720 1.00 0.00 O ATOM 345 N ARG 100 -31.567 -32.103 7.214 1.00 0.00 N ATOM 346 CA ARG 100 -32.014 -30.743 7.518 1.00 0.00 C ATOM 347 C ARG 100 -32.637 -30.686 8.926 1.00 0.00 C ATOM 348 O ARG 100 -32.448 -29.692 9.659 1.00 0.00 O ATOM 349 N TRP 101 -33.372 -31.741 9.307 1.00 0.00 N ATOM 350 CA TRP 101 -33.886 -31.823 10.679 1.00 0.00 C ATOM 351 C TRP 101 -32.748 -31.766 11.749 1.00 0.00 C ATOM 352 O TRP 101 -32.825 -30.997 12.711 1.00 0.00 O ATOM 353 N LYS 102 -31.672 -32.537 11.522 1.00 0.00 N ATOM 354 CA LYS 102 -30.527 -32.560 12.410 1.00 0.00 C ATOM 355 C LYS 102 -29.878 -31.164 12.553 1.00 0.00 C ATOM 356 O LYS 102 -29.491 -30.773 13.645 1.00 0.00 O ATOM 357 N ASN 103 -29.810 -30.407 11.445 1.00 0.00 N ATOM 358 CA ASN 103 -29.311 -29.033 11.470 1.00 0.00 C ATOM 359 C ASN 103 -30.299 -28.123 12.232 1.00 0.00 C ATOM 360 O ASN 103 -29.869 -27.240 12.983 1.00 0.00 O ATOM 361 N ILE 104 -31.613 -28.324 12.025 1.00 0.00 N ATOM 362 CA ILE 104 -32.569 -27.496 12.736 1.00 0.00 C ATOM 363 C ILE 104 -32.510 -27.740 14.260 1.00 0.00 C ATOM 364 O ILE 104 -32.658 -26.781 15.044 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 280 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 59.71 72.5 138 100.0 138 ARMSMC SECONDARY STRUCTURE . . 28.20 86.6 82 100.0 82 ARMSMC SURFACE . . . . . . . . 63.53 72.6 106 100.0 106 ARMSMC BURIED . . . . . . . . 44.81 71.9 32 100.0 32 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 62 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 60 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 37 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 16 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 52 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 36 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 37 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 5 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.07 (Number of atoms: 70) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.07 70 100.0 70 CRMSCA CRN = ALL/NP . . . . . 0.0867 CRMSCA SECONDARY STRUCTURE . . 5.96 41 100.0 41 CRMSCA SURFACE . . . . . . . . 6.51 54 100.0 54 CRMSCA BURIED . . . . . . . . 4.27 16 100.0 16 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.00 280 80.9 346 CRMSMC SECONDARY STRUCTURE . . 5.94 164 80.4 204 CRMSMC SURFACE . . . . . . . . 6.45 216 81.2 266 CRMSMC BURIED . . . . . . . . 4.15 64 80.0 80 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 303 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 259 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 189 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 233 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 70 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.00 280 48.0 583 CRMSALL SECONDARY STRUCTURE . . 5.94 164 46.5 353 CRMSALL SURFACE . . . . . . . . 6.45 216 48.1 449 CRMSALL BURIED . . . . . . . . 4.15 64 47.8 134 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.945 1.000 0.500 70 100.0 70 ERRCA SECONDARY STRUCTURE . . 4.960 1.000 0.500 41 100.0 41 ERRCA SURFACE . . . . . . . . 5.272 1.000 0.500 54 100.0 54 ERRCA BURIED . . . . . . . . 3.839 1.000 0.500 16 100.0 16 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.872 1.000 0.500 280 80.9 346 ERRMC SECONDARY STRUCTURE . . 4.902 1.000 0.500 164 80.4 204 ERRMC SURFACE . . . . . . . . 5.215 1.000 0.500 216 81.2 266 ERRMC BURIED . . . . . . . . 3.714 1.000 0.500 64 80.0 80 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 303 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 259 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 189 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 233 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 70 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.872 1.000 0.500 280 48.0 583 ERRALL SECONDARY STRUCTURE . . 4.902 1.000 0.500 164 46.5 353 ERRALL SURFACE . . . . . . . . 5.215 1.000 0.500 216 48.1 449 ERRALL BURIED . . . . . . . . 3.714 1.000 0.500 64 47.8 134 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 13 22 40 64 70 70 DISTCA CA (P) 0.00 18.57 31.43 57.14 91.43 70 DISTCA CA (RMS) 0.00 1.44 1.93 3.04 4.61 DISTCA ALL (N) 5 52 90 174 254 280 583 DISTALL ALL (P) 0.86 8.92 15.44 29.85 43.57 583 DISTALL ALL (RMS) 0.91 1.37 1.92 3.13 4.47 DISTALL END of the results output