####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 84 ( 336), selected 81 , name T0521AL396_1-D1 # Molecule2: number of CA atoms 98 ( 794), selected 81 , name T0521-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0521AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 61 30 - 179 4.81 12.71 LCS_AVERAGE: 52.92 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 110 - 133 1.68 12.92 LCS_AVERAGE: 18.10 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 111 - 131 0.99 12.99 LCS_AVERAGE: 13.28 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 81 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT K 10 K 10 4 4 24 3 3 4 6 9 12 13 15 17 20 20 21 22 23 24 26 28 41 47 52 LCS_GDT S 11 S 11 4 4 24 3 3 4 4 8 11 13 15 16 20 20 21 22 23 24 26 28 31 33 38 LCS_GDT Y 12 Y 12 4 4 24 3 3 4 5 8 12 13 15 17 20 20 21 22 23 24 26 28 39 46 52 LCS_GDT M 13 M 13 4 4 24 3 3 4 4 5 6 13 15 17 20 20 21 22 23 24 26 28 31 33 41 LCS_GDT K 14 K 14 3 4 24 3 3 3 4 4 6 7 8 9 10 13 13 15 19 22 23 24 24 25 30 LCS_GDT H 15 H 15 3 4 24 3 3 4 4 6 6 8 11 13 14 16 21 22 23 23 23 24 25 26 30 LCS_GDT S 16 S 16 3 12 24 3 3 4 7 9 12 13 15 17 20 20 21 22 23 24 26 28 28 29 32 LCS_GDT N 17 N 17 11 12 24 6 11 11 11 11 11 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT I 18 I 18 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT R 19 R 19 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT N 20 N 20 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT I 21 I 21 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT I 22 I 22 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT I 23 I 23 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT N 24 N 24 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT I 25 I 25 11 12 24 6 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT M 26 M 26 11 12 24 6 11 11 11 11 11 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT A 27 A 27 11 12 24 7 11 11 11 11 12 13 15 17 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT H 28 H 28 3 12 24 3 3 3 3 6 7 13 15 16 20 20 21 22 23 24 26 28 31 33 34 LCS_GDT E 29 E 29 3 4 24 3 3 3 3 4 4 6 7 9 12 18 19 21 23 23 26 28 28 31 34 LCS_GDT L 30 L 30 3 3 61 3 3 3 3 4 5 6 9 10 13 18 20 22 23 23 32 35 39 46 49 LCS_GDT T 107 T 107 3 3 61 3 3 3 4 6 6 7 13 16 20 20 21 22 31 39 47 50 53 57 60 LCS_GDT F 108 F 108 3 3 61 3 3 3 4 6 8 13 15 17 20 20 27 33 44 50 57 57 58 59 60 LCS_GDT L 109 L 109 3 3 61 3 3 3 3 3 8 10 15 17 20 20 21 22 29 33 47 53 57 59 60 LCS_GDT K 110 K 110 19 24 61 7 11 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT A 111 A 111 21 24 61 7 11 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT A 112 A 112 21 24 61 7 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT F 113 F 113 21 24 61 9 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT N 114 N 114 21 24 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT K 115 K 115 21 24 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT I 116 I 116 21 24 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 117 D 117 21 24 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT K 118 K 118 21 24 61 8 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 119 D 119 21 24 61 13 20 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT E 120 E 120 21 24 61 13 20 28 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 121 D 121 21 24 61 13 20 30 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT G 122 G 122 21 24 61 13 20 30 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT Y 123 Y 123 21 24 61 11 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT I 124 I 124 21 24 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT S 125 S 125 21 24 61 13 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT K 126 K 126 21 24 61 13 20 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT S 127 S 127 21 24 61 13 20 28 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 128 D 128 21 24 61 13 20 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT I 129 I 129 21 24 61 8 20 27 36 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT V 130 V 130 21 24 61 13 20 27 34 41 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT S 131 S 131 21 24 61 8 18 27 34 41 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT L 132 L 132 3 24 61 3 3 3 16 20 33 45 49 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT V 133 V 133 3 24 61 3 3 15 21 39 44 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT H 134 H 134 3 18 61 3 3 5 14 19 25 34 41 45 50 53 56 57 57 57 57 57 58 59 60 LCS_GDT D 135 D 135 3 18 61 3 4 10 18 27 39 43 49 53 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT L 138 L 138 13 22 61 1 11 27 33 40 45 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 139 D 139 13 22 61 6 9 27 33 40 45 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT N 140 N 140 13 22 61 4 5 15 17 24 42 49 50 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT N 141 N 141 13 22 61 4 5 15 18 40 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 142 D 142 13 22 61 6 16 30 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT I 143 I 143 13 22 61 4 18 28 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 144 D 144 13 22 61 7 23 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT N 145 N 145 13 22 61 7 23 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT F 146 F 146 13 22 61 7 20 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT F 147 F 147 13 22 61 7 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT L 148 L 148 13 22 61 7 13 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT S 149 S 149 13 22 61 7 14 28 40 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT V 150 V 150 13 22 61 7 21 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT H 151 H 151 11 22 61 4 10 24 35 42 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT S 152 S 152 10 22 61 3 4 9 15 21 37 45 49 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT I 153 I 153 3 22 61 3 3 7 9 15 25 37 45 47 50 53 54 57 57 57 57 57 58 59 60 LCS_GDT K 165 K 165 15 22 61 13 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT I 166 I 166 15 22 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT S 167 S 167 15 22 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT F 168 F 168 15 22 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT Q 169 Q 169 15 22 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT E 170 E 170 15 22 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT F 171 F 171 15 20 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT K 172 K 172 15 20 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT D 173 D 173 15 15 61 11 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT Y 174 Y 174 15 15 61 10 24 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT M 175 M 175 15 15 61 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT L 176 L 176 15 15 61 11 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT S 177 S 177 15 15 61 11 25 32 40 44 48 48 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT T 178 T 178 15 15 61 11 25 32 41 44 48 48 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_GDT F 179 F 179 15 15 61 14 25 32 41 44 48 48 51 54 55 55 56 57 57 57 57 57 58 59 60 LCS_AVERAGE LCS_A: 28.10 ( 13.28 18.10 52.92 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 25 32 41 44 48 49 51 54 55 55 56 57 57 57 57 57 58 59 60 GDT PERCENT_AT 14.29 25.51 32.65 41.84 44.90 48.98 50.00 52.04 55.10 56.12 56.12 57.14 58.16 58.16 58.16 58.16 58.16 59.18 60.20 61.22 GDT RMS_LOCAL 0.33 0.60 0.84 1.20 1.30 1.57 1.89 1.91 2.20 2.34 2.34 2.58 2.78 2.78 2.78 2.78 2.78 3.26 3.70 4.15 GDT RMS_ALL_AT 14.45 14.59 14.58 14.13 14.17 13.90 13.08 13.40 13.30 13.21 13.21 13.04 13.02 13.02 13.02 13.02 13.02 12.88 12.77 12.78 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA K 10 K 10 19.136 5 0.399 0.399 21.643 0.000 0.000 LGA S 11 S 11 18.715 2 0.123 0.123 21.396 0.000 0.000 LGA Y 12 Y 12 18.565 8 0.594 0.594 22.493 0.000 0.000 LGA M 13 M 13 23.712 4 0.652 0.652 25.527 0.000 0.000 LGA K 14 K 14 27.436 5 0.095 0.095 29.425 0.000 0.000 LGA H 15 H 15 29.170 6 0.687 0.687 29.170 0.000 0.000 LGA S 16 S 16 28.632 2 0.702 0.702 28.726 0.000 0.000 LGA N 17 N 17 25.923 4 0.620 0.620 27.413 0.000 0.000 LGA I 18 I 18 25.903 4 0.086 0.086 25.903 0.000 0.000 LGA R 19 R 19 21.683 7 0.024 0.024 23.094 0.000 0.000 LGA N 20 N 20 23.585 4 0.076 0.076 25.183 0.000 0.000 LGA I 21 I 21 27.099 4 0.012 0.012 27.099 0.000 0.000 LGA I 22 I 22 24.085 4 0.046 0.046 25.027 0.000 0.000 LGA I 23 I 23 22.556 4 0.046 0.046 24.314 0.000 0.000 LGA N 24 N 24 27.296 4 0.027 0.027 28.713 0.000 0.000 LGA I 25 I 25 27.609 4 0.136 0.136 27.609 0.000 0.000 LGA M 26 M 26 24.638 4 0.186 0.186 25.502 0.000 0.000 LGA A 27 A 27 27.181 1 0.263 0.263 28.485 0.000 0.000 LGA H 28 H 28 28.626 6 0.620 0.620 28.626 0.000 0.000 LGA E 29 E 29 28.739 5 0.201 0.201 28.739 0.000 0.000 LGA L 30 L 30 24.373 4 0.615 0.615 25.625 0.000 0.000 LGA T 107 T 107 17.066 3 0.605 0.605 18.145 0.000 0.000 LGA F 108 F 108 14.344 7 0.035 0.035 16.673 0.000 0.000 LGA L 109 L 109 15.087 4 0.068 0.068 18.576 0.000 0.000 LGA K 110 K 110 1.575 5 0.077 0.077 1.981 79.405 35.291 LGA A 111 A 111 1.397 1 0.029 0.029 1.630 83.810 67.048 LGA A 112 A 112 1.301 1 0.061 0.061 1.301 81.429 65.143 LGA F 113 F 113 0.774 7 0.024 0.024 0.867 90.476 32.900 LGA N 114 N 114 0.352 4 0.032 0.032 0.731 95.238 47.619 LGA K 115 K 115 0.704 5 0.018 0.018 0.925 90.476 40.212 LGA I 116 I 116 0.862 4 0.008 0.008 0.911 90.476 45.238 LGA D 117 D 117 0.860 4 0.034 0.034 0.970 90.476 45.238 LGA K 118 K 118 0.690 5 0.155 0.155 2.018 81.786 36.349 LGA D 119 D 119 1.515 4 0.033 0.033 1.826 75.000 37.500 LGA E 120 E 120 1.907 5 0.133 0.133 1.907 72.857 32.381 LGA D 121 D 121 1.500 4 0.021 0.021 1.609 79.286 39.643 LGA G 122 G 122 1.543 0 0.125 0.125 1.543 77.143 77.143 LGA Y 123 Y 123 0.861 8 0.119 0.119 0.867 90.476 30.159 LGA I 124 I 124 0.665 4 0.045 0.045 0.868 90.476 45.238 LGA S 125 S 125 0.663 2 0.026 0.026 0.836 90.476 60.317 LGA K 126 K 126 1.322 5 0.043 0.043 1.580 81.548 36.243 LGA S 127 S 127 1.567 2 0.044 0.044 1.894 77.143 51.429 LGA D 128 D 128 0.863 4 0.049 0.049 1.481 85.952 42.976 LGA I 129 I 129 2.130 4 0.022 0.022 2.923 64.881 32.440 LGA V 130 V 130 2.736 3 0.052 0.052 3.389 57.262 32.721 LGA S 131 S 131 2.879 2 0.018 0.018 3.486 53.571 35.714 LGA L 132 L 132 4.884 4 0.079 0.079 5.195 37.738 18.869 LGA V 133 V 133 4.231 3 0.261 0.261 7.197 29.643 16.939 LGA H 134 H 134 9.404 6 0.170 0.170 11.071 4.048 1.619 LGA D 135 D 135 7.010 4 0.043 0.043 7.198 10.833 5.417 LGA L 138 L 138 4.380 4 0.049 0.049 4.752 35.714 17.857 LGA D 139 D 139 4.021 4 0.198 0.198 4.052 41.905 20.952 LGA N 140 N 140 4.614 4 0.033 0.033 4.614 38.810 19.405 LGA N 141 N 141 2.918 4 0.136 0.136 3.252 63.214 31.607 LGA D 142 D 142 1.239 4 0.120 0.120 1.581 79.286 39.643 LGA I 143 I 143 1.567 4 0.062 0.062 1.567 77.143 38.571 LGA D 144 D 144 0.822 4 0.064 0.064 1.055 88.214 44.107 LGA N 145 N 145 1.217 4 0.017 0.017 1.545 81.548 40.774 LGA F 146 F 146 1.362 7 0.039 0.039 1.362 81.429 29.610 LGA F 147 F 147 0.896 7 0.059 0.059 1.288 85.952 31.255 LGA L 148 L 148 2.002 4 0.032 0.032 2.641 67.024 33.512 LGA S 149 S 149 2.520 2 0.028 0.028 2.670 60.952 40.635 LGA V 150 V 150 1.271 3 0.103 0.103 2.195 72.976 41.701 LGA H 151 H 151 2.982 6 0.400 0.400 3.795 52.143 20.857 LGA S 152 S 152 5.660 2 0.253 0.253 8.075 16.905 11.270 LGA I 153 I 153 9.148 4 0.490 0.490 10.220 3.214 1.607 LGA K 165 K 165 1.457 5 0.113 0.113 1.785 77.143 34.286 LGA I 166 I 166 0.296 4 0.016 0.016 0.520 97.619 48.810 LGA S 167 S 167 0.498 2 0.027 0.027 0.498 100.000 66.667 LGA F 168 F 168 0.470 7 0.050 0.050 0.652 92.857 33.766 LGA Q 169 Q 169 1.311 5 0.049 0.049 1.329 83.690 37.196 LGA E 170 E 170 0.918 5 0.036 0.036 0.986 90.476 40.212 LGA F 171 F 171 0.882 7 0.083 0.083 1.182 85.952 31.255 LGA K 172 K 172 1.247 5 0.025 0.025 1.795 77.143 34.286 LGA D 173 D 173 2.113 4 0.037 0.037 2.471 66.786 33.393 LGA Y 174 Y 174 2.293 8 0.026 0.026 2.769 62.857 20.952 LGA M 175 M 175 1.564 4 0.028 0.028 1.893 72.857 36.429 LGA L 176 L 176 2.063 4 0.016 0.016 2.596 64.881 32.440 LGA S 177 S 177 2.892 2 0.184 0.184 3.042 55.357 36.905 LGA T 178 T 178 2.844 3 0.176 0.176 2.850 59.048 33.741 LGA F 179 F 179 2.721 8 0.229 0.229 3.050 57.262 19.087 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 81 324 324 100.00 668 324 48.50 98 SUMMARY(RMSD_GDC): 10.752 10.804 10.804 40.329 20.557 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 84 98 4.0 51 1.91 44.388 39.963 2.537 LGA_LOCAL RMSD: 1.910 Number of atoms: 51 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.398 Number of assigned atoms: 81 Std_ASGN_ATOMS RMSD: 10.752 Standard rmsd on all 81 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.536308 * X + 0.841299 * Y + 0.067754 * Z + -10.814509 Y_new = -0.185096 * X + -0.038913 * Y + -0.981950 * Z + -16.958014 Z_new = -0.823476 * X + -0.539168 * Y + 0.176591 * Z + 32.876873 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.809262 0.967511 -1.254283 [DEG: -160.9589 55.4343 -71.8651 ] ZXZ: 0.068890 1.393275 -2.150501 [DEG: 3.9471 79.8288 -123.2146 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0521AL396_1-D1 REMARK 2: T0521-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0521AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 84 98 4.0 51 1.91 39.963 10.75 REMARK ---------------------------------------------------------- MOLECULE T0521AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2hpk_A ATOM 1 N LYS 10 -29.580 -46.691 -22.636 1.00 0.00 N ATOM 2 CA LYS 10 -29.109 -48.105 -22.509 1.00 0.00 C ATOM 3 C LYS 10 -29.060 -48.611 -21.045 1.00 0.00 C ATOM 4 O LYS 10 -30.097 -48.729 -20.380 1.00 0.00 O ATOM 5 N SER 11 -27.854 -48.876 -20.549 1.00 0.00 N ATOM 6 CA SER 11 -27.640 -49.610 -19.293 1.00 0.00 C ATOM 7 C SER 11 -27.820 -48.731 -18.050 1.00 0.00 C ATOM 8 O SER 11 -28.719 -48.940 -17.255 1.00 0.00 O ATOM 9 N TYR 12 -26.988 -47.725 -17.878 1.00 0.00 N ATOM 10 CA TYR 12 -27.121 -46.885 -16.672 1.00 0.00 C ATOM 11 C TYR 12 -28.196 -45.816 -16.843 1.00 0.00 C ATOM 12 O TYR 12 -28.444 -45.332 -17.952 1.00 0.00 O ATOM 13 N MET 13 -28.843 -45.442 -15.748 1.00 0.00 N ATOM 14 CA MET 13 -29.878 -44.414 -15.814 1.00 0.00 C ATOM 15 C MET 13 -30.178 -43.858 -14.423 1.00 0.00 C ATOM 16 O MET 13 -29.488 -44.205 -13.463 1.00 0.00 O ATOM 17 N LYS 14 -31.216 -43.028 -14.333 1.00 0.00 N ATOM 18 CA LYS 14 -31.737 -42.482 -13.054 1.00 0.00 C ATOM 19 C LYS 14 -32.065 -43.489 -11.968 1.00 0.00 C ATOM 20 O LYS 14 -31.970 -43.189 -10.802 1.00 0.00 O ATOM 21 N HIS 15 -32.499 -44.668 -12.324 1.00 0.00 N ATOM 22 CA HIS 15 -32.858 -45.638 -11.284 1.00 0.00 C ATOM 23 C HIS 15 -31.689 -46.498 -10.786 1.00 0.00 C ATOM 24 O HIS 15 -31.788 -47.168 -9.749 1.00 0.00 O ATOM 25 N SER 16 -30.575 -46.360 -11.508 1.00 0.00 N ATOM 26 CA SER 16 -29.384 -47.181 -11.483 1.00 0.00 C ATOM 27 C SER 16 -28.106 -46.560 -10.977 1.00 0.00 C ATOM 28 O SER 16 -27.134 -47.275 -10.719 1.00 0.00 O ATOM 29 N ASN 17 -28.062 -45.239 -11.028 1.00 0.00 N ATOM 30 CA ASN 17 -26.787 -44.535 -10.964 1.00 0.00 C ATOM 31 C ASN 17 -27.018 -43.167 -10.415 1.00 0.00 C ATOM 32 O ASN 17 -27.880 -42.447 -10.928 1.00 0.00 O ATOM 33 N ILE 18 -26.248 -42.787 -9.396 1.00 0.00 N ATOM 34 CA ILE 18 -26.507 -41.566 -8.690 1.00 0.00 C ATOM 35 C ILE 18 -26.163 -40.331 -9.517 1.00 0.00 C ATOM 36 O ILE 18 -26.768 -39.282 -9.326 1.00 0.00 O ATOM 37 N ARG 19 -25.145 -40.415 -10.372 1.00 0.00 N ATOM 38 CA ARG 19 -24.827 -39.290 -11.245 1.00 0.00 C ATOM 39 C ARG 19 -25.951 -39.037 -12.230 1.00 0.00 C ATOM 40 O ARG 19 -26.308 -37.888 -12.437 1.00 0.00 O ATOM 41 N ASN 20 -26.574 -40.081 -12.778 1.00 0.00 N ATOM 42 CA ASN 20 -27.784 -39.852 -13.613 1.00 0.00 C ATOM 43 C ASN 20 -28.948 -39.266 -12.774 1.00 0.00 C ATOM 44 O ASN 20 -29.619 -38.298 -13.197 1.00 0.00 O ATOM 45 N ILE 21 -29.122 -39.776 -11.563 1.00 0.00 N ATOM 46 CA ILE 21 -30.149 -39.223 -10.672 1.00 0.00 C ATOM 47 C ILE 21 -29.924 -37.724 -10.465 1.00 0.00 C ATOM 48 O ILE 21 -30.868 -36.942 -10.612 1.00 0.00 O ATOM 49 N ILE 22 -28.681 -37.350 -10.145 1.00 0.00 N ATOM 50 CA ILE 22 -28.298 -35.950 -9.974 1.00 0.00 C ATOM 51 C ILE 22 -28.561 -35.078 -11.219 1.00 0.00 C ATOM 52 O ILE 22 -29.220 -34.049 -11.120 1.00 0.00 O ATOM 53 N ILE 23 -28.029 -35.476 -12.391 1.00 0.00 N ATOM 54 CA ILE 23 -28.233 -34.722 -13.625 1.00 0.00 C ATOM 55 C ILE 23 -29.703 -34.494 -13.903 1.00 0.00 C ATOM 56 O ILE 23 -30.138 -33.365 -14.195 1.00 0.00 O ATOM 57 N ASN 24 -30.488 -35.552 -13.771 1.00 0.00 N ATOM 58 CA ASN 24 -31.905 -35.414 -14.069 1.00 0.00 C ATOM 59 C ASN 24 -32.677 -34.573 -13.029 1.00 0.00 C ATOM 60 O ASN 24 -33.654 -33.877 -13.393 1.00 0.00 O ATOM 61 N ILE 25 -32.217 -34.571 -11.774 1.00 0.00 N ATOM 62 CA ILE 25 -32.835 -33.735 -10.743 1.00 0.00 C ATOM 63 C ILE 25 -32.727 -32.240 -11.022 1.00 0.00 C ATOM 64 O ILE 25 -33.586 -31.475 -10.549 1.00 0.00 O ATOM 65 N MET 26 -31.657 -31.827 -11.719 1.00 0.00 N ATOM 66 CA MET 26 -31.457 -30.457 -12.132 1.00 0.00 C ATOM 67 C MET 26 -31.874 -30.125 -13.578 1.00 0.00 C ATOM 68 O MET 26 -31.764 -28.979 -14.009 1.00 0.00 O ATOM 69 N ALA 27 -32.324 -31.127 -14.337 1.00 0.00 N ATOM 70 CA ALA 27 -32.805 -30.935 -15.725 1.00 0.00 C ATOM 71 C ALA 27 -31.748 -31.075 -16.808 1.00 0.00 C ATOM 72 O ALA 27 -31.972 -30.672 -17.957 1.00 0.00 O ATOM 73 N HIS 28 -30.592 -31.646 -16.456 1.00 0.00 N ATOM 74 CA HIS 28 -29.523 -31.870 -17.430 1.00 0.00 C ATOM 75 C HIS 28 -29.773 -33.256 -18.075 1.00 0.00 C ATOM 76 O HIS 28 -29.869 -34.263 -17.379 1.00 0.00 O ATOM 77 N GLU 29 -29.910 -33.267 -19.408 1.00 0.00 N ATOM 78 CA GLU 29 -30.353 -34.417 -20.202 1.00 0.00 C ATOM 79 C GLU 29 -29.216 -35.245 -20.819 1.00 0.00 C ATOM 80 O GLU 29 -29.444 -36.117 -21.674 1.00 0.00 O ATOM 81 N LEU 30 -27.996 -34.950 -20.382 1.00 0.00 N ATOM 82 CA LEU 30 -26.796 -35.629 -20.846 1.00 0.00 C ATOM 83 C LEU 30 -26.990 -37.141 -20.926 1.00 0.00 C ATOM 84 O LEU 30 -27.519 -37.776 -19.993 1.00 0.00 O ATOM 373 N THR 107 -21.526 -30.005 -13.893 1.00 0.00 N ATOM 374 CA THR 107 -22.810 -29.463 -13.552 1.00 0.00 C ATOM 375 C THR 107 -22.809 -28.841 -12.140 1.00 0.00 C ATOM 376 O THR 107 -23.366 -27.779 -11.929 1.00 0.00 O ATOM 377 N PHE 108 -22.186 -29.521 -11.190 1.00 0.00 N ATOM 378 CA PHE 108 -22.064 -29.023 -9.790 1.00 0.00 C ATOM 379 C PHE 108 -21.343 -27.673 -9.760 1.00 0.00 C ATOM 380 O PHE 108 -21.742 -26.742 -9.083 1.00 0.00 O ATOM 381 N LEU 109 -20.248 -27.622 -10.501 1.00 0.00 N ATOM 382 CA LEU 109 -19.398 -26.461 -10.635 1.00 0.00 C ATOM 383 C LEU 109 -20.157 -25.264 -11.251 1.00 0.00 C ATOM 384 O LEU 109 -20.116 -24.171 -10.702 1.00 0.00 O ATOM 385 N LYS 110 -10.135 -33.110 0.602 1.00 0.00 N ATOM 386 CA LYS 110 -10.091 -32.452 1.937 1.00 0.00 C ATOM 387 C LYS 110 -10.252 -33.409 3.093 1.00 0.00 C ATOM 388 O LYS 110 -9.642 -33.217 4.158 1.00 0.00 O ATOM 389 N ALA 111 -11.084 -34.443 2.912 1.00 0.00 N ATOM 390 CA ALA 111 -11.251 -35.442 4.002 1.00 0.00 C ATOM 391 C ALA 111 -9.955 -36.224 4.253 1.00 0.00 C ATOM 392 O ALA 111 -9.549 -36.489 5.410 1.00 0.00 O ATOM 393 N ALA 112 -9.263 -36.565 3.175 1.00 0.00 N ATOM 394 CA ALA 112 -7.906 -37.150 3.295 1.00 0.00 C ATOM 395 C ALA 112 -6.862 -36.210 3.830 1.00 0.00 C ATOM 396 O ALA 112 -6.012 -36.614 4.597 1.00 0.00 O ATOM 397 N PHE 113 -6.904 -34.962 3.401 1.00 0.00 N ATOM 398 CA PHE 113 -5.930 -33.971 3.837 1.00 0.00 C ATOM 399 C PHE 113 -5.846 -33.946 5.365 1.00 0.00 C ATOM 400 O PHE 113 -4.757 -34.013 5.920 1.00 0.00 O ATOM 401 N ASN 114 -7.006 -33.869 6.039 1.00 0.00 N ATOM 402 CA ASN 114 -7.093 -33.776 7.508 1.00 0.00 C ATOM 403 C ASN 114 -6.508 -35.020 8.213 1.00 0.00 C ATOM 404 O ASN 114 -5.883 -34.919 9.268 1.00 0.00 O ATOM 405 N LYS 115 -6.711 -36.182 7.599 1.00 0.00 N ATOM 406 CA LYS 115 -6.175 -37.448 8.102 1.00 0.00 C ATOM 407 C LYS 115 -4.636 -37.562 7.815 1.00 0.00 C ATOM 408 O LYS 115 -3.902 -38.076 8.653 1.00 0.00 O ATOM 409 N ILE 116 -4.203 -37.089 6.646 1.00 0.00 N ATOM 410 CA ILE 116 -2.784 -37.130 6.240 1.00 0.00 C ATOM 411 C ILE 116 -1.902 -36.221 7.107 1.00 0.00 C ATOM 412 O ILE 116 -0.764 -36.565 7.397 1.00 0.00 O ATOM 413 N ASP 117 -2.434 -35.072 7.519 1.00 0.00 N ATOM 414 CA ASP 117 -1.671 -34.136 8.328 1.00 0.00 C ATOM 415 C ASP 117 -1.592 -34.713 9.733 1.00 0.00 C ATOM 416 O ASP 117 -2.276 -34.257 10.642 1.00 0.00 O ATOM 417 N LYS 118 -0.763 -35.719 9.913 1.00 0.00 N ATOM 418 CA LYS 118 -0.732 -36.463 11.157 1.00 0.00 C ATOM 419 C LYS 118 0.049 -35.747 12.256 1.00 0.00 C ATOM 420 O LYS 118 -0.062 -36.131 13.436 1.00 0.00 O ATOM 421 N ASP 119 0.811 -34.707 11.898 1.00 0.00 N ATOM 422 CA ASP 119 1.487 -33.889 12.946 1.00 0.00 C ATOM 423 C ASP 119 0.744 -32.560 13.234 1.00 0.00 C ATOM 424 O ASP 119 1.214 -31.722 13.979 1.00 0.00 O ATOM 425 N GLU 120 -0.410 -32.356 12.617 1.00 0.00 N ATOM 426 CA GLU 120 -1.273 -31.222 12.939 1.00 0.00 C ATOM 427 C GLU 120 -0.762 -29.820 12.611 1.00 0.00 C ATOM 428 O GLU 120 -1.371 -28.834 13.058 1.00 0.00 O ATOM 429 N ASP 121 0.315 -29.723 11.807 1.00 0.00 N ATOM 430 CA ASP 121 0.948 -28.439 11.497 1.00 0.00 C ATOM 431 C ASP 121 0.252 -27.650 10.369 1.00 0.00 C ATOM 432 O ASP 121 0.715 -26.583 9.987 1.00 0.00 O ATOM 433 N GLY 122 -0.818 -28.200 9.792 1.00 0.00 N ATOM 434 CA GLY 122 -1.629 -27.441 8.845 1.00 0.00 C ATOM 435 C GLY 122 -1.504 -27.870 7.409 1.00 0.00 C ATOM 436 O GLY 122 -2.362 -27.546 6.549 1.00 0.00 O ATOM 437 N TYR 123 -0.442 -28.607 7.125 1.00 0.00 N ATOM 438 CA TYR 123 -0.092 -28.895 5.760 1.00 0.00 C ATOM 439 C TYR 123 0.355 -30.353 5.601 1.00 0.00 C ATOM 440 O TYR 123 0.578 -31.022 6.588 1.00 0.00 O ATOM 441 N ILE 124 0.446 -30.843 4.357 1.00 0.00 N ATOM 442 CA ILE 124 0.864 -32.219 4.062 1.00 0.00 C ATOM 443 C ILE 124 2.272 -32.155 3.446 1.00 0.00 C ATOM 444 O ILE 124 2.484 -31.593 2.342 1.00 0.00 O ATOM 445 N SER 125 3.209 -32.760 4.150 1.00 0.00 N ATOM 446 CA SER 125 4.566 -32.870 3.685 1.00 0.00 C ATOM 447 C SER 125 4.780 -34.158 2.898 1.00 0.00 C ATOM 448 O SER 125 3.868 -34.980 2.727 1.00 0.00 O ATOM 449 N LYS 126 5.991 -34.328 2.384 1.00 0.00 N ATOM 450 CA LYS 126 6.274 -35.448 1.505 1.00 0.00 C ATOM 451 C LYS 126 6.217 -36.783 2.268 1.00 0.00 C ATOM 452 O LYS 126 5.768 -37.791 1.727 1.00 0.00 O ATOM 453 N SER 127 6.595 -36.787 3.549 1.00 0.00 N ATOM 454 CA SER 127 6.570 -38.068 4.270 1.00 0.00 C ATOM 455 C SER 127 5.100 -38.441 4.563 1.00 0.00 C ATOM 456 O SER 127 4.747 -39.637 4.540 1.00 0.00 O ATOM 457 N ASP 128 4.275 -37.415 4.814 1.00 0.00 N ATOM 458 CA ASP 128 2.814 -37.625 4.967 1.00 0.00 C ATOM 459 C ASP 128 2.233 -38.125 3.662 1.00 0.00 C ATOM 460 O ASP 128 1.386 -39.017 3.677 1.00 0.00 O ATOM 461 N ILE 129 2.737 -37.608 2.522 1.00 0.00 N ATOM 462 CA ILE 129 2.262 -38.127 1.231 1.00 0.00 C ATOM 463 C ILE 129 2.654 -39.596 1.044 1.00 0.00 C ATOM 464 O ILE 129 1.881 -40.349 0.491 1.00 0.00 O ATOM 465 N VAL 130 3.821 -40.014 1.548 1.00 0.00 N ATOM 466 CA VAL 130 4.275 -41.445 1.427 1.00 0.00 C ATOM 467 C VAL 130 3.295 -42.388 2.116 1.00 0.00 C ATOM 468 O VAL 130 3.030 -43.509 1.663 1.00 0.00 O ATOM 469 N SER 131 2.780 -41.912 3.244 1.00 0.00 N ATOM 470 CA SER 131 1.812 -42.655 4.004 1.00 0.00 C ATOM 471 C SER 131 0.547 -42.860 3.136 1.00 0.00 C ATOM 472 O SER 131 -0.026 -43.951 3.112 1.00 0.00 O ATOM 473 N LEU 132 1.412 -45.535 0.756 1.00 0.00 N ATOM 474 CA LEU 132 1.396 -46.808 1.473 1.00 0.00 C ATOM 475 C LEU 132 -0.067 -47.281 1.630 1.00 0.00 C ATOM 476 O LEU 132 -0.379 -48.405 1.272 1.00 0.00 O ATOM 477 N VAL 133 -0.969 -46.409 2.094 1.00 0.00 N ATOM 478 CA VAL 133 -2.412 -46.756 2.224 1.00 0.00 C ATOM 479 C VAL 133 -3.045 -47.231 0.919 1.00 0.00 C ATOM 480 O VAL 133 -3.934 -48.093 0.921 1.00 0.00 O ATOM 481 N HIS 134 -2.591 -46.670 -0.189 1.00 0.00 N ATOM 482 CA HIS 134 -3.142 -47.009 -1.500 1.00 0.00 C ATOM 483 C HIS 134 -2.436 -48.148 -2.193 1.00 0.00 C ATOM 484 O HIS 134 -2.746 -48.450 -3.354 1.00 0.00 O ATOM 485 N ASP 135 -1.494 -48.766 -1.483 1.00 0.00 N ATOM 486 CA ASP 135 -0.770 -49.902 -2.007 1.00 0.00 C ATOM 487 C ASP 135 0.121 -49.495 -3.200 1.00 0.00 C ATOM 488 O ASP 135 0.352 -50.315 -4.109 1.00 0.00 O ATOM 489 N LEU 138 0.596 -48.239 -3.231 1.00 0.00 N ATOM 490 CA LEU 138 1.522 -47.800 -4.283 1.00 0.00 C ATOM 491 C LEU 138 2.915 -47.560 -3.685 1.00 0.00 C ATOM 492 O LEU 138 3.024 -47.255 -2.502 1.00 0.00 O ATOM 493 N ASP 139 3.992 -47.790 -4.463 1.00 0.00 N ATOM 494 CA ASP 139 5.334 -47.605 -3.906 1.00 0.00 C ATOM 495 C ASP 139 5.494 -46.245 -3.263 1.00 0.00 C ATOM 496 O ASP 139 5.027 -45.256 -3.813 1.00 0.00 O ATOM 497 N ASN 140 6.096 -46.184 -2.079 1.00 0.00 N ATOM 498 CA ASN 140 6.162 -44.913 -1.332 1.00 0.00 C ATOM 499 C ASN 140 7.002 -43.866 -2.033 1.00 0.00 C ATOM 500 O ASN 140 6.774 -42.659 -1.893 1.00 0.00 O ATOM 501 N ASN 141 7.971 -44.343 -2.807 1.00 0.00 N ATOM 502 CA ASN 141 8.874 -43.463 -3.549 1.00 0.00 C ATOM 503 C ASN 141 8.093 -42.654 -4.577 1.00 0.00 C ATOM 504 O ASN 141 8.527 -41.586 -4.985 1.00 0.00 O ATOM 505 N ASP 142 6.948 -43.183 -5.006 1.00 0.00 N ATOM 506 CA ASP 142 6.123 -42.460 -5.943 1.00 0.00 C ATOM 507 C ASP 142 5.640 -41.129 -5.388 1.00 0.00 C ATOM 508 O ASP 142 5.290 -40.242 -6.162 1.00 0.00 O ATOM 509 N ILE 143 5.605 -40.986 -4.058 1.00 0.00 N ATOM 510 CA ILE 143 5.287 -39.674 -3.407 1.00 0.00 C ATOM 511 C ILE 143 6.198 -38.524 -3.878 1.00 0.00 C ATOM 512 O ILE 143 5.752 -37.376 -4.023 1.00 0.00 O ATOM 513 N ASP 144 7.462 -38.834 -4.165 1.00 0.00 N ATOM 514 CA ASP 144 8.393 -37.817 -4.675 1.00 0.00 C ATOM 515 C ASP 144 7.887 -37.219 -5.977 1.00 0.00 C ATOM 516 O ASP 144 7.698 -35.986 -6.102 1.00 0.00 O ATOM 517 N ASN 145 7.607 -38.108 -6.929 1.00 0.00 N ATOM 518 CA ASN 145 6.985 -37.723 -8.207 1.00 0.00 C ATOM 519 C ASN 145 5.722 -36.890 -8.031 1.00 0.00 C ATOM 520 O ASN 145 5.586 -35.840 -8.637 1.00 0.00 O ATOM 521 N PHE 146 4.783 -37.386 -7.221 1.00 0.00 N ATOM 522 CA PHE 146 3.496 -36.695 -7.052 1.00 0.00 C ATOM 523 C PHE 146 3.575 -35.425 -6.253 1.00 0.00 C ATOM 524 O PHE 146 2.863 -34.463 -6.549 1.00 0.00 O ATOM 525 N PHE 147 4.458 -35.398 -5.270 1.00 0.00 N ATOM 526 CA PHE 147 4.611 -34.198 -4.510 1.00 0.00 C ATOM 527 C PHE 147 5.148 -33.093 -5.438 1.00 0.00 C ATOM 528 O PHE 147 4.671 -31.972 -5.408 1.00 0.00 O ATOM 529 N LEU 148 6.115 -33.433 -6.287 1.00 0.00 N ATOM 530 CA LEU 148 6.682 -32.458 -7.235 1.00 0.00 C ATOM 531 C LEU 148 5.630 -31.839 -8.161 1.00 0.00 C ATOM 532 O LEU 148 5.526 -30.613 -8.262 1.00 0.00 O ATOM 533 N SER 149 4.841 -32.701 -8.811 1.00 0.00 N ATOM 534 CA SER 149 3.831 -32.235 -9.747 1.00 0.00 C ATOM 535 C SER 149 2.834 -31.357 -9.006 1.00 0.00 C ATOM 536 O SER 149 2.527 -30.257 -9.452 1.00 0.00 O ATOM 537 N VAL 150 2.396 -31.822 -7.827 1.00 0.00 N ATOM 538 CA VAL 150 1.365 -31.145 -7.030 1.00 0.00 C ATOM 539 C VAL 150 1.792 -29.869 -6.316 1.00 0.00 C ATOM 540 O VAL 150 0.953 -28.992 -6.054 1.00 0.00 O ATOM 541 N HIS 151 3.071 -29.783 -5.933 1.00 0.00 N ATOM 542 CA HIS 151 3.559 -28.617 -5.159 1.00 0.00 C ATOM 543 C HIS 151 3.867 -27.430 -6.078 1.00 0.00 C ATOM 544 O HIS 151 5.044 -27.105 -6.344 1.00 0.00 O ATOM 545 N SER 152 2.789 -26.800 -6.540 1.00 0.00 N ATOM 546 CA SER 152 2.867 -25.876 -7.657 1.00 0.00 C ATOM 547 C SER 152 3.461 -24.524 -7.249 1.00 0.00 C ATOM 548 O SER 152 4.070 -23.839 -8.082 1.00 0.00 O ATOM 549 N ILE 153 3.303 -24.151 -5.973 1.00 0.00 N ATOM 550 CA ILE 153 3.921 -22.907 -5.456 1.00 0.00 C ATOM 551 C ILE 153 5.318 -23.163 -4.843 1.00 0.00 C ATOM 552 O ILE 153 5.880 -22.306 -4.150 1.00 0.00 O ATOM 553 N LYS 154 5.836 -24.373 -5.098 1.00 0.00 N ATOM 554 CA LYS 154 7.160 -24.812 -4.651 1.00 0.00 C ATOM 555 C LYS 154 7.477 -24.456 -3.176 1.00 0.00 C ATOM 556 O LYS 154 8.603 -24.099 -2.830 1.00 0.00 O ATOM 557 N LYS 155 6.468 -24.576 -2.318 1.00 0.00 N ATOM 558 CA LYS 155 6.573 -24.285 -0.882 1.00 0.00 C ATOM 559 C LYS 155 7.209 -25.422 -0.072 1.00 0.00 C ATOM 560 O LYS 155 7.655 -25.192 1.067 1.00 0.00 O ATOM 561 N GLY 156 7.271 -26.628 -0.649 1.00 0.00 N ATOM 562 CA GLY 156 7.800 -27.821 0.045 1.00 0.00 C ATOM 563 C GLY 156 6.737 -28.489 0.886 1.00 0.00 C ATOM 564 O GLY 156 7.020 -29.397 1.678 1.00 0.00 O ATOM 565 N LYS 165 5.505 -28.002 0.715 1.00 0.00 N ATOM 566 CA LYS 165 4.314 -28.452 1.452 1.00 0.00 C ATOM 567 C LYS 165 3.100 -28.422 0.534 1.00 0.00 C ATOM 568 O LYS 165 2.919 -27.475 -0.250 1.00 0.00 O ATOM 569 N ILE 166 2.263 -29.453 0.636 1.00 0.00 N ATOM 570 CA ILE 166 0.984 -29.403 -0.052 1.00 0.00 C ATOM 571 C ILE 166 -0.075 -28.700 0.787 1.00 0.00 C ATOM 572 O ILE 166 -0.344 -29.073 1.931 1.00 0.00 O ATOM 573 N SER 167 -0.618 -27.651 0.182 1.00 0.00 N ATOM 574 CA SER 167 -1.724 -26.899 0.707 1.00 0.00 C ATOM 575 C SER 167 -3.019 -27.653 0.254 1.00 0.00 C ATOM 576 O SER 167 -2.972 -28.522 -0.638 1.00 0.00 O ATOM 577 N PHE 168 -4.153 -27.355 0.860 1.00 0.00 N ATOM 578 CA PHE 168 -5.396 -28.058 0.508 1.00 0.00 C ATOM 579 C PHE 168 -5.770 -28.067 -0.969 1.00 0.00 C ATOM 580 O PHE 168 -6.160 -29.111 -1.495 1.00 0.00 O ATOM 581 N GLN 169 -5.673 -26.900 -1.627 1.00 0.00 N ATOM 582 CA GLN 169 -5.962 -26.813 -3.079 1.00 0.00 C ATOM 583 C GLN 169 -5.026 -27.623 -3.931 1.00 0.00 C ATOM 584 O GLN 169 -5.443 -28.216 -4.922 1.00 0.00 O ATOM 585 N GLU 170 -3.773 -27.727 -3.507 1.00 0.00 N ATOM 586 CA GLU 170 -2.806 -28.556 -4.234 1.00 0.00 C ATOM 587 C GLU 170 -3.139 -30.032 -4.160 1.00 0.00 C ATOM 588 O GLU 170 -3.039 -30.747 -5.147 1.00 0.00 O ATOM 589 N PHE 171 -3.568 -30.509 -2.993 1.00 0.00 N ATOM 590 CA PHE 171 -4.008 -31.904 -2.920 1.00 0.00 C ATOM 591 C PHE 171 -5.312 -32.153 -3.726 1.00 0.00 C ATOM 592 O PHE 171 -5.452 -33.173 -4.404 1.00 0.00 O ATOM 593 N LYS 172 -6.250 -31.214 -3.660 1.00 0.00 N ATOM 594 CA LYS 172 -7.437 -31.281 -4.539 1.00 0.00 C ATOM 595 C LYS 172 -6.972 -31.426 -6.021 1.00 0.00 C ATOM 596 O LYS 172 -7.485 -32.267 -6.760 1.00 0.00 O ATOM 597 N ASP 173 -6.018 -30.594 -6.428 1.00 0.00 N ATOM 598 CA ASP 173 -5.456 -30.679 -7.781 1.00 0.00 C ATOM 599 C ASP 173 -4.927 -32.070 -8.100 1.00 0.00 C ATOM 600 O ASP 173 -5.271 -32.608 -9.153 1.00 0.00 O ATOM 601 N TYR 174 -4.130 -32.644 -7.190 1.00 0.00 N ATOM 602 CA TYR 174 -3.588 -34.009 -7.342 1.00 0.00 C ATOM 603 C TYR 174 -4.696 -35.077 -7.430 1.00 0.00 C ATOM 604 O TYR 174 -4.649 -35.958 -8.317 1.00 0.00 O ATOM 605 N MET 175 -5.703 -34.980 -6.547 1.00 0.00 N ATOM 606 CA MET 175 -6.890 -35.826 -6.660 1.00 0.00 C ATOM 607 C MET 175 -7.580 -35.673 -8.026 1.00 0.00 C ATOM 608 O MET 175 -7.849 -36.681 -8.670 1.00 0.00 O ATOM 609 N LEU 176 -7.846 -34.427 -8.453 1.00 0.00 N ATOM 610 CA LEU 176 -8.622 -34.124 -9.669 1.00 0.00 C ATOM 611 C LEU 176 -7.950 -34.645 -10.923 1.00 0.00 C ATOM 612 O LEU 176 -8.640 -35.198 -11.792 1.00 0.00 O ATOM 613 N SER 177 -6.624 -34.458 -11.024 1.00 0.00 N ATOM 614 CA SER 177 -5.850 -34.947 -12.167 1.00 0.00 C ATOM 615 C SER 177 -5.937 -36.449 -12.187 1.00 0.00 C ATOM 616 O SER 177 -6.109 -37.061 -13.254 1.00 0.00 O ATOM 617 N THR 178 -5.822 -37.054 -11.009 1.00 0.00 N ATOM 618 CA THR 178 -5.976 -38.496 -10.936 1.00 0.00 C ATOM 619 C THR 178 -7.350 -39.004 -11.429 1.00 0.00 C ATOM 620 O THR 178 -7.409 -39.996 -12.151 1.00 0.00 O ATOM 621 N PHE 179 -8.446 -38.362 -11.033 1.00 0.00 N ATOM 622 CA PHE 179 -9.780 -38.871 -11.410 1.00 0.00 C ATOM 623 C PHE 179 -10.303 -38.310 -12.732 1.00 0.00 C ATOM 624 O PHE 179 -10.944 -39.036 -13.489 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 324 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.52 55.0 40 20.6 194 ARMSMC SECONDARY STRUCTURE . . 64.93 62.5 32 25.0 128 ARMSMC SURFACE . . . . . . . . 101.84 36.4 22 16.7 132 ARMSMC BURIED . . . . . . . . 18.35 77.8 18 29.0 62 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 92 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 86 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 61 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 62 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 30 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 74 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 51 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 48 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 26 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 26 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 20 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 10 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.75 (Number of atoms: 81) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.75 81 82.7 98 CRMSCA CRN = ALL/NP . . . . . 0.1327 CRMSCA SECONDARY STRUCTURE . . 10.94 54 84.4 64 CRMSCA SURFACE . . . . . . . . 10.73 50 74.6 67 CRMSCA BURIED . . . . . . . . 10.78 31 100.0 31 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.81 324 66.3 489 CRMSMC SECONDARY STRUCTURE . . 11.04 216 67.5 320 CRMSMC SURFACE . . . . . . . . 10.81 200 59.9 334 CRMSMC BURIED . . . . . . . . 10.80 124 80.0 155 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 402 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 334 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 273 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 263 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 139 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.81 324 40.8 794 CRMSALL SECONDARY STRUCTURE . . 11.04 216 40.8 529 CRMSALL SURFACE . . . . . . . . 10.81 200 37.7 531 CRMSALL BURIED . . . . . . . . 10.80 124 47.1 263 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.574 1.000 0.500 81 82.7 98 ERRCA SECONDARY STRUCTURE . . 9.856 1.000 0.500 54 84.4 64 ERRCA SURFACE . . . . . . . . 9.549 1.000 0.500 50 74.6 67 ERRCA BURIED . . . . . . . . 9.614 1.000 0.500 31 100.0 31 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.646 1.000 0.500 324 66.3 489 ERRMC SECONDARY STRUCTURE . . 9.967 1.000 0.500 216 67.5 320 ERRMC SURFACE . . . . . . . . 9.639 1.000 0.500 200 59.9 334 ERRMC BURIED . . . . . . . . 9.656 1.000 0.500 124 80.0 155 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 402 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 334 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 273 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 263 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 139 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.646 1.000 0.500 324 40.8 794 ERRALL SECONDARY STRUCTURE . . 9.967 1.000 0.500 216 40.8 529 ERRALL SURFACE . . . . . . . . 9.639 1.000 0.500 200 37.7 531 ERRALL BURIED . . . . . . . . 9.656 1.000 0.500 124 47.1 263 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 7 56 81 98 DISTCA CA (P) 0.00 0.00 2.04 7.14 57.14 98 DISTCA CA (RMS) 0.00 0.00 2.83 3.53 6.87 DISTCA ALL (N) 0 0 7 36 222 324 794 DISTALL ALL (P) 0.00 0.00 0.88 4.53 27.96 794 DISTALL ALL (RMS) 0.00 0.00 2.83 3.93 6.90 DISTALL END of the results output