####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 305), selected 20 , name T0518TS264_1_1-D1 # Molecule2: number of CA atoms 256 ( 2032), selected 20 , name T0518-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0518TS264_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 33 - 47 4.74 8.54 LONGEST_CONTINUOUS_SEGMENT: 15 34 - 48 4.89 8.69 LCS_AVERAGE: 5.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 33 - 39 1.98 10.33 LCS_AVERAGE: 2.30 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 4 34 - 37 0.45 13.37 LONGEST_CONTINUOUS_SEGMENT: 4 36 - 39 0.92 11.33 LONGEST_CONTINUOUS_SEGMENT: 4 40 - 43 0.94 14.20 LONGEST_CONTINUOUS_SEGMENT: 4 45 - 48 0.65 23.78 LCS_AVERAGE: 1.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT P 33 P 33 3 7 15 0 3 3 6 6 7 7 7 9 10 10 13 14 14 15 16 17 17 18 18 LCS_GDT S 34 S 34 4 7 15 3 4 4 6 6 7 8 9 9 10 10 13 14 14 15 16 17 17 18 18 LCS_GDT K 35 K 35 4 7 15 3 4 4 6 6 7 8 9 9 10 12 13 14 14 15 16 17 17 18 18 LCS_GDT V 36 V 36 4 7 15 3 4 5 6 6 7 8 9 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT A 37 A 37 4 7 15 3 4 5 6 6 7 8 9 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT L 38 L 38 4 7 15 3 4 5 6 6 7 8 9 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT S 39 S 39 4 7 15 3 4 5 5 6 7 8 9 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT Y 40 Y 40 4 5 15 3 3 4 4 5 5 8 9 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT S 41 S 41 4 5 15 3 3 4 4 5 5 8 9 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT K 42 K 42 4 5 15 3 3 4 4 5 5 7 9 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT S 43 S 43 4 5 15 3 3 4 4 5 7 8 10 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT L 44 L 44 3 5 15 3 3 4 4 4 7 8 10 10 10 12 12 13 14 15 16 17 17 18 18 LCS_GDT K 45 K 45 4 4 15 3 4 4 4 5 5 8 10 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT A 46 A 46 4 4 15 3 4 4 4 6 7 8 10 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT P 47 P 47 4 6 15 3 4 5 5 6 6 8 10 11 11 12 13 14 14 15 16 17 17 18 18 LCS_GDT E 48 E 48 4 6 15 3 4 4 5 5 7 8 10 10 10 10 10 12 13 15 16 17 17 18 18 LCS_GDT T 49 T 49 3 6 12 3 3 4 5 5 7 8 10 10 10 10 10 12 13 14 16 17 17 18 18 LCS_GDT D 50 D 50 3 6 12 3 3 4 5 5 6 8 10 10 10 10 10 12 12 13 15 17 17 18 18 LCS_GDT S 51 S 51 3 6 12 3 3 3 5 5 7 8 10 10 10 10 10 12 12 13 13 13 14 14 14 LCS_GDT L 52 L 52 3 6 12 3 3 4 5 5 7 8 10 10 10 10 10 10 12 13 13 13 13 13 14 LCS_AVERAGE LCS_A: 3.12 ( 1.45 2.30 5.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 6 6 7 8 10 11 11 12 13 14 14 15 16 17 17 18 18 GDT PERCENT_AT 1.17 1.56 1.95 2.34 2.34 2.73 3.12 3.91 4.30 4.30 4.69 5.08 5.47 5.47 5.86 6.25 6.64 6.64 7.03 7.03 GDT RMS_LOCAL 0.06 0.45 1.11 1.59 1.59 1.98 2.47 2.87 3.49 3.49 3.73 4.18 4.51 4.43 4.74 5.09 5.60 5.48 5.83 5.83 GDT RMS_ALL_AT 24.17 13.37 10.55 13.21 13.21 10.33 8.33 18.92 9.56 9.56 9.79 8.78 8.39 8.95 8.54 8.36 7.91 8.13 7.96 7.96 # Checking swapping # possible swapping detected: Y 40 Y 40 # possible swapping detected: D 50 D 50 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA P 33 P 33 39.454 0 0.191 0.337 41.667 0.000 0.000 LGA S 34 S 34 40.154 0 0.649 0.784 40.961 0.000 0.000 LGA K 35 K 35 34.713 0 0.123 2.340 36.520 0.000 0.000 LGA V 36 V 36 31.245 0 0.138 0.780 32.618 0.000 0.000 LGA A 37 A 37 26.759 0 0.185 0.265 28.271 0.000 0.000 LGA L 38 L 38 20.777 0 0.603 1.283 23.078 0.000 0.000 LGA S 39 S 39 15.590 0 0.010 0.464 17.606 0.000 0.000 LGA Y 40 Y 40 11.645 0 0.576 1.563 13.644 0.000 0.000 LGA S 41 S 41 10.166 0 0.096 0.426 10.166 0.714 2.381 LGA K 42 K 42 9.811 0 0.043 2.322 15.537 5.238 2.328 LGA S 43 S 43 2.927 0 0.693 0.729 6.757 55.476 45.397 LGA L 44 L 44 2.906 0 0.029 1.250 7.164 67.024 44.643 LGA K 45 K 45 4.149 0 0.267 2.290 9.592 50.595 25.079 LGA A 46 A 46 2.607 0 0.083 0.088 3.984 59.048 55.905 LGA P 47 P 47 3.627 0 0.658 0.656 5.841 46.905 38.095 LGA E 48 E 48 1.893 0 0.519 1.335 5.882 79.405 53.598 LGA T 49 T 49 1.340 0 0.092 0.432 2.884 73.452 72.041 LGA D 50 D 50 3.158 0 0.638 1.178 7.036 55.476 38.452 LGA S 51 S 51 2.721 0 0.043 0.698 4.643 57.262 51.746 LGA L 52 L 52 2.323 0 0.418 1.128 4.701 54.762 54.643 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 80 100.00 148 148 100.00 256 SUMMARY(RMSD_GDC): 7.700 7.886 8.454 2.365 1.892 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 256 4.0 10 2.87 3.516 3.201 0.337 LGA_LOCAL RMSD: 2.869 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.919 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 7.700 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.220126 * X + -0.920347 * Y + 0.323274 * Z + 2.191933 Y_new = 0.572453 * X + -0.390216 * Y + -0.721130 * Z + 49.799572 Z_new = 0.789836 * X + 0.026320 * Y + 0.612753 * Z + 0.364911 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.937896 -0.910542 0.042927 [DEG: 111.0333 -52.1702 2.4595 ] ZXZ: 0.421429 0.911257 1.537485 [DEG: 24.1461 52.2112 88.0914 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0518TS264_1_1-D1 REMARK 2: T0518-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0518TS264_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 256 4.0 10 2.87 3.201 7.70 REMARK ---------------------------------------------------------- MOLECULE T0518TS264_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0518 REMARK PARENT N/A ATOM 467 N PRO 33 12.316 44.870 45.529 1.00 0.00 N ATOM 468 CA PRO 33 11.153 45.747 45.463 1.00 0.00 C ATOM 469 C PRO 33 10.999 46.556 46.745 1.00 0.00 C ATOM 470 O PRO 33 10.418 47.641 46.740 1.00 0.00 O ATOM 471 CB PRO 33 9.976 44.793 45.237 1.00 0.00 C ATOM 472 CG PRO 33 10.483 43.465 45.686 1.00 0.00 C ATOM 473 CD PRO 33 11.936 43.440 45.293 1.00 0.00 C ATOM 474 HA PRO 33 11.231 46.498 44.662 1.00 0.00 H ATOM 475 HB2 PRO 33 9.092 45.098 45.817 1.00 0.00 H ATOM 476 HB3 PRO 33 9.675 44.768 44.180 1.00 0.00 H ATOM 477 HG2 PRO 33 10.366 43.341 46.772 1.00 0.00 H ATOM 478 HG3 PRO 33 9.929 42.646 45.206 1.00 0.00 H ATOM 479 HD2 PRO 33 12.538 42.812 45.966 1.00 0.00 H ATOM 480 HD3 PRO 33 12.084 43.052 44.274 1.00 0.00 H ATOM 481 N SER 34 11.522 46.020 47.843 1.00 0.00 N ATOM 482 CA SER 34 11.412 46.674 49.141 1.00 0.00 C ATOM 483 C SER 34 12.587 47.612 49.385 1.00 0.00 C ATOM 484 O SER 34 12.554 48.437 50.299 1.00 0.00 O ATOM 485 CB SER 34 11.327 45.635 50.242 1.00 0.00 C ATOM 486 OG SER 34 11.391 44.329 49.741 1.00 0.00 O ATOM 487 H SER 34 12.007 45.137 47.775 1.00 0.00 H ATOM 488 HA SER 34 10.473 47.211 49.277 1.00 0.00 H ATOM 489 HB2 SER 34 12.156 45.791 50.932 1.00 0.00 H ATOM 490 HB3 SER 34 10.385 45.765 50.773 1.00 0.00 H ATOM 491 HG SER 34 11.335 43.704 50.468 1.00 0.00 H ATOM 492 N LYS 35 13.622 47.482 48.565 1.00 0.00 N ATOM 493 CA LYS 35 14.860 48.226 48.768 1.00 0.00 C ATOM 494 C LYS 35 15.076 49.248 47.660 1.00 0.00 C ATOM 495 O LYS 35 15.064 48.907 46.476 1.00 0.00 O ATOM 496 CB LYS 35 16.054 47.271 48.844 1.00 0.00 C ATOM 497 CG LYS 35 15.689 45.799 48.720 1.00 0.00 C ATOM 498 CD LYS 35 14.188 45.611 48.551 1.00 0.00 C ATOM 499 CE LYS 35 13.460 46.947 48.553 1.00 0.00 C ATOM 500 NZ LYS 35 14.395 48.091 48.726 1.00 0.00 N ATOM 501 H LYS 35 13.551 46.851 47.779 1.00 0.00 H ATOM 502 HA LYS 35 14.804 48.787 49.701 1.00 0.00 H ATOM 503 HB2 LYS 35 16.733 47.547 48.038 1.00 0.00 H ATOM 504 HB3 LYS 35 16.540 47.444 49.804 1.00 0.00 H ATOM 505 HG2 LYS 35 16.207 45.386 47.853 1.00 0.00 H ATOM 506 HG3 LYS 35 16.021 45.282 49.620 1.00 0.00 H ATOM 507 HD2 LYS 35 14.006 45.099 47.606 1.00 0.00 H ATOM 508 HD3 LYS 35 13.820 44.997 49.373 1.00 0.00 H ATOM 509 HE2 LYS 35 12.932 47.050 47.606 1.00 0.00 H ATOM 510 HE3 LYS 35 12.739 46.941 49.371 1.00 0.00 H ATOM 511 HZ1 LYS 35 13.873 48.956 48.722 1.00 0.00 H ATOM 512 HZ2 LYS 35 14.884 47.997 49.605 1.00 0.00 H ATOM 513 HZ3 LYS 35 15.062 48.097 47.968 1.00 0.00 H ATOM 514 N VAL 36 15.275 50.502 48.049 1.00 0.00 N ATOM 515 CA VAL 36 15.738 51.528 47.122 1.00 0.00 C ATOM 516 C VAL 36 17.051 52.142 47.591 1.00 0.00 C ATOM 517 O VAL 36 17.111 52.770 48.648 1.00 0.00 O ATOM 518 CB VAL 36 14.693 52.646 46.947 1.00 0.00 C ATOM 519 CG1 VAL 36 13.451 52.348 47.773 1.00 0.00 C ATOM 520 CG2 VAL 36 15.282 53.992 47.341 1.00 0.00 C ATOM 521 H VAL 36 15.101 50.753 49.012 1.00 0.00 H ATOM 522 HA VAL 36 15.962 51.105 46.142 1.00 0.00 H ATOM 523 HB VAL 36 14.421 52.715 45.894 1.00 0.00 H ATOM 524 HG11 VAL 36 12.723 53.148 47.639 1.00 0.00 H ATOM 525 HG12 VAL 36 13.016 51.403 47.448 1.00 0.00 H ATOM 526 HG13 VAL 36 13.722 52.279 48.828 1.00 0.00 H ATOM 527 HG21 VAL 36 14.530 54.771 47.211 1.00 0.00 H ATOM 528 HG22 VAL 36 15.595 53.960 48.385 1.00 0.00 H ATOM 529 HG23 VAL 36 16.143 54.212 46.710 1.00 0.00 H ATOM 530 N ALA 37 18.101 51.958 46.798 1.00 0.00 N ATOM 531 CA ALA 37 19.451 52.311 47.221 1.00 0.00 C ATOM 532 C ALA 37 20.202 53.040 46.114 1.00 0.00 C ATOM 533 O ALA 37 19.735 53.112 44.977 1.00 0.00 O ATOM 534 CB ALA 37 20.214 51.066 47.652 1.00 0.00 C ATOM 535 H ALA 37 17.961 51.563 45.879 1.00 0.00 H ATOM 536 HA ALA 37 19.385 52.990 48.071 1.00 0.00 H ATOM 537 HB1 ALA 37 21.220 51.347 47.964 1.00 0.00 H ATOM 538 HB2 ALA 37 19.694 50.592 48.484 1.00 0.00 H ATOM 539 HB3 ALA 37 20.275 50.370 46.817 1.00 0.00 H ATOM 540 N LEU 38 21.368 53.580 46.453 1.00 0.00 N ATOM 541 CA LEU 38 22.216 54.249 45.474 1.00 0.00 C ATOM 542 C LEU 38 23.428 53.397 45.121 1.00 0.00 C ATOM 543 O LEU 38 23.734 53.192 43.946 1.00 0.00 O ATOM 544 CB LEU 38 22.662 55.617 46.006 1.00 0.00 C ATOM 545 CG LEU 38 22.134 55.979 47.401 1.00 0.00 C ATOM 546 CD1 LEU 38 21.270 54.848 47.941 1.00 0.00 C ATOM 547 CD2 LEU 38 23.306 56.255 48.331 1.00 0.00 C ATOM 548 H LEU 38 21.674 53.525 47.414 1.00 0.00 H ATOM 549 HA LEU 38 21.660 54.394 44.548 1.00 0.00 H ATOM 550 HB2 LEU 38 23.737 55.449 46.044 1.00 0.00 H ATOM 551 HB3 LEU 38 22.444 56.416 45.297 1.00 0.00 H ATOM 552 HG LEU 38 21.563 56.901 47.301 1.00 0.00 H ATOM 553 HD11 LEU 38 20.900 55.114 48.932 1.00 0.00 H ATOM 554 HD12 LEU 38 20.426 54.683 47.271 1.00 0.00 H ATOM 555 HD13 LEU 38 21.863 53.937 48.009 1.00 0.00 H ATOM 556 HD21 LEU 38 22.930 56.513 49.322 1.00 0.00 H ATOM 557 HD22 LEU 38 23.934 55.366 48.400 1.00 0.00 H ATOM 558 HD23 LEU 38 23.894 57.085 47.940 1.00 0.00 H ATOM 559 N SER 39 24.115 52.902 46.145 1.00 0.00 N ATOM 560 CA SER 39 25.032 51.780 45.981 1.00 0.00 C ATOM 561 C SER 39 24.275 50.482 45.727 1.00 0.00 C ATOM 562 O SER 39 23.157 50.299 46.207 1.00 0.00 O ATOM 563 CB SER 39 25.915 51.644 47.206 1.00 0.00 C ATOM 564 OG SER 39 25.621 52.612 48.177 1.00 0.00 O ATOM 565 H SER 39 23.999 53.312 47.060 1.00 0.00 H ATOM 566 HA SER 39 25.774 51.938 45.197 1.00 0.00 H ATOM 567 HB2 SER 39 25.764 50.654 47.636 1.00 0.00 H ATOM 568 HB3 SER 39 26.955 51.753 46.902 1.00 0.00 H ATOM 569 HG SER 39 25.755 53.487 47.806 1.00 0.00 H ATOM 570 N TYR 40 24.892 49.585 44.965 1.00 0.00 N ATOM 571 CA TYR 40 24.282 48.298 44.652 1.00 0.00 C ATOM 572 C TYR 40 24.041 47.481 45.915 1.00 0.00 C ATOM 573 O TYR 40 22.977 46.886 46.087 1.00 0.00 O ATOM 574 CB TYR 40 25.162 47.511 43.678 1.00 0.00 C ATOM 575 CG TYR 40 26.399 48.257 43.230 1.00 0.00 C ATOM 576 CD1 TYR 40 26.659 49.543 43.681 1.00 0.00 C ATOM 577 CD2 TYR 40 27.306 47.671 42.359 1.00 0.00 C ATOM 578 CE1 TYR 40 27.788 50.229 43.276 1.00 0.00 C ATOM 579 CE2 TYR 40 28.438 48.346 41.948 1.00 0.00 C ATOM 580 CZ TYR 40 28.676 49.626 42.408 1.00 0.00 C ATOM 581 OH TYR 40 29.803 50.303 42.001 1.00 0.00 H ATOM 582 H TYR 40 25.806 49.799 44.594 1.00 0.00 H ATOM 583 HA TYR 40 23.306 48.453 44.192 1.00 0.00 H ATOM 584 HB2 TYR 40 25.455 46.589 44.180 1.00 0.00 H ATOM 585 HB3 TYR 40 24.548 47.273 42.810 1.00 0.00 H ATOM 586 HD1 TYR 40 25.953 50.013 44.367 1.00 0.00 H ATOM 587 HD2 TYR 40 27.112 46.661 41.999 1.00 0.00 H ATOM 588 HE1 TYR 40 27.979 51.238 43.638 1.00 0.00 H ATOM 589 HE2 TYR 40 29.139 47.869 41.262 1.00 0.00 H ATOM 590 HH TYR 40 30.351 49.792 41.401 1.00 0.00 H ATOM 591 N SER 41 25.035 47.456 46.796 1.00 0.00 N ATOM 592 CA SER 41 24.907 46.771 48.077 1.00 0.00 C ATOM 593 C SER 41 25.890 47.327 49.099 1.00 0.00 C ATOM 594 O SER 41 26.685 48.215 48.792 1.00 0.00 O ATOM 595 CB SER 41 25.119 45.281 47.896 1.00 0.00 C ATOM 596 OG SER 41 25.412 44.948 46.566 1.00 0.00 O ATOM 597 H SER 41 25.902 47.923 46.573 1.00 0.00 H ATOM 598 HA SER 41 23.895 46.797 48.482 1.00 0.00 H ATOM 599 HB2 SER 41 25.949 44.967 48.530 1.00 0.00 H ATOM 600 HB3 SER 41 24.213 44.759 48.201 1.00 0.00 H ATOM 601 HG SER 41 25.537 43.999 46.495 1.00 0.00 H ATOM 602 N LYS 42 25.832 46.799 50.316 1.00 0.00 N ATOM 603 CA LYS 42 26.732 47.225 51.381 1.00 0.00 C ATOM 604 C LYS 42 28.146 46.711 51.146 1.00 0.00 C ATOM 605 O LYS 42 29.103 47.198 51.749 1.00 0.00 O ATOM 606 CB LYS 42 26.218 46.747 52.741 1.00 0.00 C ATOM 607 CG LYS 42 24.910 45.970 52.681 1.00 0.00 C ATOM 608 CD LYS 42 24.400 45.854 51.253 1.00 0.00 C ATOM 609 CE LYS 42 25.331 46.551 50.273 1.00 0.00 C ATOM 610 NZ LYS 42 26.493 47.178 50.959 1.00 0.00 N ATOM 611 H LYS 42 25.145 46.083 50.510 1.00 0.00 H ATOM 612 HA LYS 42 26.796 48.314 51.396 1.00 0.00 H ATOM 613 HB2 LYS 42 26.996 46.115 53.172 1.00 0.00 H ATOM 614 HB3 LYS 42 26.086 47.633 53.362 1.00 0.00 H ATOM 615 HG2 LYS 42 25.080 44.973 53.089 1.00 0.00 H ATOM 616 HG3 LYS 42 24.170 46.489 53.290 1.00 0.00 H ATOM 617 HD2 LYS 42 24.326 44.796 50.995 1.00 0.00 H ATOM 618 HD3 LYS 42 23.411 46.309 51.198 1.00 0.00 H ATOM 619 HE2 LYS 42 25.689 45.814 49.556 1.00 0.00 H ATOM 620 HE3 LYS 42 24.762 47.319 49.749 1.00 0.00 H ATOM 621 HZ1 LYS 42 27.085 47.630 50.276 1.00 0.00 H ATOM 622 HZ2 LYS 42 26.163 47.864 51.623 1.00 0.00 H ATOM 623 HZ3 LYS 42 27.022 46.467 51.444 1.00 0.00 H ATOM 624 N SER 43 28.272 45.724 50.265 1.00 0.00 N ATOM 625 CA SER 43 29.465 44.887 50.218 1.00 0.00 C ATOM 626 C SER 43 30.385 45.303 49.078 1.00 0.00 C ATOM 627 O SER 43 31.490 44.777 48.935 1.00 0.00 O ATOM 628 CB SER 43 29.075 43.429 50.077 1.00 0.00 C ATOM 629 OG SER 43 27.685 43.260 50.012 1.00 0.00 O ATOM 630 H SER 43 27.523 45.549 49.611 1.00 0.00 H ATOM 631 HA SER 43 30.021 44.872 51.157 1.00 0.00 H ATOM 632 HB2 SER 43 29.523 43.035 49.164 1.00 0.00 H ATOM 633 HB3 SER 43 29.459 42.879 50.935 1.00 0.00 H ATOM 634 HG SER 43 27.481 42.326 49.923 1.00 0.00 H ATOM 635 N LEU 44 29.925 46.250 48.268 1.00 0.00 N ATOM 636 CA LEU 44 30.720 46.764 47.160 1.00 0.00 C ATOM 637 C LEU 44 31.101 48.222 47.384 1.00 0.00 C ATOM 638 O LEU 44 30.233 49.087 47.508 1.00 0.00 O ATOM 639 CB LEU 44 29.954 46.609 45.841 1.00 0.00 C ATOM 640 CG LEU 44 28.575 45.946 45.960 1.00 0.00 C ATOM 641 CD1 LEU 44 28.291 45.592 47.414 1.00 0.00 C ATOM 642 CD2 LEU 44 27.510 46.885 45.415 1.00 0.00 C ATOM 643 H LEU 44 28.999 46.624 48.424 1.00 0.00 H ATOM 644 HA LEU 44 31.655 46.208 47.093 1.00 0.00 H ATOM 645 HB2 LEU 44 29.841 47.659 45.576 1.00 0.00 H ATOM 646 HB3 LEU 44 30.553 46.107 45.082 1.00 0.00 H ATOM 647 HG LEU 44 28.589 45.056 45.330 1.00 0.00 H ATOM 648 HD11 LEU 44 27.310 45.121 47.489 1.00 0.00 H ATOM 649 HD12 LEU 44 29.053 44.901 47.775 1.00 0.00 H ATOM 650 HD13 LEU 44 28.305 46.498 48.018 1.00 0.00 H ATOM 651 HD21 LEU 44 26.531 46.412 45.501 1.00 0.00 H ATOM 652 HD22 LEU 44 27.516 47.813 45.987 1.00 0.00 H ATOM 653 HD23 LEU 44 27.718 47.103 44.367 1.00 0.00 H ATOM 654 N LYS 45 32.401 48.489 47.434 1.00 0.00 N ATOM 655 CA LYS 45 32.901 49.786 47.873 1.00 0.00 C ATOM 656 C LYS 45 33.103 50.726 46.693 1.00 0.00 C ATOM 657 O LYS 45 32.737 51.901 46.752 1.00 0.00 O ATOM 658 CB LYS 45 34.211 49.622 48.646 1.00 0.00 C ATOM 659 CG LYS 45 34.668 48.178 48.810 1.00 0.00 C ATOM 660 CD LYS 45 33.679 47.210 48.178 1.00 0.00 C ATOM 661 CE LYS 45 32.495 47.945 47.570 1.00 0.00 C ATOM 662 NZ LYS 45 32.595 49.418 47.761 1.00 0.00 N ATOM 663 H LYS 45 33.061 47.774 47.162 1.00 0.00 H ATOM 664 HA LYS 45 32.169 50.261 48.528 1.00 0.00 H ATOM 665 HB2 LYS 45 34.973 50.183 48.104 1.00 0.00 H ATOM 666 HB3 LYS 45 34.062 50.069 49.629 1.00 0.00 H ATOM 667 HG2 LYS 45 35.642 48.067 48.333 1.00 0.00 H ATOM 668 HG3 LYS 45 34.757 47.963 49.875 1.00 0.00 H ATOM 669 HD2 LYS 45 34.195 46.644 47.401 1.00 0.00 H ATOM 670 HD3 LYS 45 33.323 46.525 48.948 1.00 0.00 H ATOM 671 HE2 LYS 45 32.463 47.720 46.505 1.00 0.00 H ATOM 672 HE3 LYS 45 31.585 47.579 48.045 1.00 0.00 H ATOM 673 HZ1 LYS 45 31.792 49.867 47.344 1.00 0.00 H ATOM 674 HZ2 LYS 45 32.623 49.628 48.749 1.00 0.00 H ATOM 675 HZ3 LYS 45 33.438 49.758 47.320 1.00 0.00 H ATOM 676 N ALA 46 33.687 50.204 45.620 1.00 0.00 N ATOM 677 CA ALA 46 33.898 50.984 44.406 1.00 0.00 C ATOM 678 C ALA 46 33.670 50.138 43.160 1.00 0.00 C ATOM 679 O ALA 46 34.069 48.975 43.107 1.00 0.00 O ATOM 680 CB ALA 46 35.298 51.581 44.396 1.00 0.00 C ATOM 681 H ALA 46 33.993 49.242 45.645 1.00 0.00 H ATOM 682 HA ALA 46 33.172 51.798 44.383 1.00 0.00 H ATOM 683 HB1 ALA 46 35.439 52.160 43.483 1.00 0.00 H ATOM 684 HB2 ALA 46 35.422 52.232 45.261 1.00 0.00 H ATOM 685 HB3 ALA 46 36.034 50.780 44.434 1.00 0.00 H ATOM 686 N PRO 47 33.024 50.728 42.160 1.00 0.00 N ATOM 687 CA PRO 47 32.772 50.040 40.900 1.00 0.00 C ATOM 688 C PRO 47 34.073 49.735 40.169 1.00 0.00 C ATOM 689 O PRO 47 34.155 48.774 39.403 1.00 0.00 O ATOM 690 CB PRO 47 31.883 51.011 40.115 1.00 0.00 C ATOM 691 CG PRO 47 32.137 52.338 40.744 1.00 0.00 C ATOM 692 CD PRO 47 32.353 52.051 42.207 1.00 0.00 C ATOM 693 HA PRO 47 32.288 49.062 41.038 1.00 0.00 H ATOM 694 HB2 PRO 47 32.143 51.021 39.046 1.00 0.00 H ATOM 695 HB3 PRO 47 30.821 50.732 40.186 1.00 0.00 H ATOM 696 HG2 PRO 47 33.019 52.826 40.303 1.00 0.00 H ATOM 697 HG3 PRO 47 31.285 53.018 40.596 1.00 0.00 H ATOM 698 HD2 PRO 47 33.022 52.786 42.680 1.00 0.00 H ATOM 699 HD3 PRO 47 31.412 52.061 42.775 1.00 0.00 H ATOM 700 N GLU 48 35.087 50.558 40.409 1.00 0.00 N ATOM 701 CA GLU 48 36.343 50.463 39.673 1.00 0.00 C ATOM 702 C GLU 48 37.359 49.612 40.426 1.00 0.00 C ATOM 703 O GLU 48 38.094 48.830 39.825 1.00 0.00 O ATOM 704 CB GLU 48 36.917 51.856 39.409 1.00 0.00 C ATOM 705 CG GLU 48 36.071 52.998 39.955 1.00 0.00 C ATOM 706 CD GLU 48 34.835 52.485 40.640 1.00 0.00 C ATOM 707 OE1 GLU 48 34.655 51.291 40.681 1.00 0.00 O ATOM 708 OE2 GLU 48 34.130 53.275 41.220 1.00 0.00 O ATOM 709 H GLU 48 34.986 51.269 41.119 1.00 0.00 H ATOM 710 HA GLU 48 36.174 49.967 38.716 1.00 0.00 H ATOM 711 HB2 GLU 48 37.905 51.886 39.867 1.00 0.00 H ATOM 712 HB3 GLU 48 37.013 51.961 38.328 1.00 0.00 H ATOM 713 HG2 GLU 48 36.616 53.654 40.634 1.00 0.00 H ATOM 714 HG3 GLU 48 35.788 53.556 39.064 1.00 0.00 H ATOM 715 N THR 49 37.394 49.771 41.745 1.00 0.00 N ATOM 716 CA THR 49 38.377 49.084 42.573 1.00 0.00 C ATOM 717 C THR 49 38.250 47.571 42.438 1.00 0.00 C ATOM 718 O THR 49 39.198 46.833 42.706 1.00 0.00 O ATOM 719 CB THR 49 38.236 49.470 44.056 1.00 0.00 C ATOM 720 OG1 THR 49 37.175 50.422 44.206 1.00 0.00 O ATOM 721 CG2 THR 49 39.531 50.074 44.577 1.00 0.00 C ATOM 722 H THR 49 36.722 50.383 42.185 1.00 0.00 H ATOM 723 HA THR 49 39.383 49.339 42.240 1.00 0.00 H ATOM 724 HB THR 49 37.995 48.578 44.634 1.00 0.00 H ATOM 725 HG1 THR 49 37.375 51.207 43.689 1.00 0.00 H ATOM 726 HG21 THR 49 39.412 50.340 45.627 1.00 0.00 H ATOM 727 HG22 THR 49 40.337 49.347 44.475 1.00 0.00 H ATOM 728 HG23 THR 49 39.772 50.967 44.001 1.00 0.00 H ATOM 729 N ASP 50 37.074 47.116 42.021 1.00 0.00 N ATOM 730 CA ASP 50 36.803 45.689 41.900 1.00 0.00 C ATOM 731 C ASP 50 36.772 45.256 40.440 1.00 0.00 C ATOM 732 O ASP 50 36.258 44.186 40.111 1.00 0.00 O ATOM 733 CB ASP 50 35.480 45.334 42.583 1.00 0.00 C ATOM 734 CG ASP 50 34.741 46.523 43.180 1.00 0.00 C ATOM 735 OD1 ASP 50 35.237 47.620 43.075 1.00 0.00 O ATOM 736 OD2 ASP 50 33.620 46.353 43.596 1.00 0.00 O ATOM 737 H ASP 50 36.347 47.776 41.782 1.00 0.00 H ATOM 738 HA ASP 50 37.603 45.120 42.376 1.00 0.00 H ATOM 739 HB2 ASP 50 34.800 44.768 41.945 1.00 0.00 H ATOM 740 HB3 ASP 50 35.845 44.692 43.386 1.00 0.00 H ATOM 741 N SER 51 37.325 46.093 39.569 1.00 0.00 N ATOM 742 CA SER 51 37.378 45.788 38.144 1.00 0.00 C ATOM 743 C SER 51 38.360 44.658 37.858 1.00 0.00 C ATOM 744 O SER 51 39.284 44.415 38.634 1.00 0.00 O ATOM 745 CB SER 51 37.759 47.029 37.359 1.00 0.00 C ATOM 746 OG SER 51 37.980 48.132 38.193 1.00 0.00 O ATOM 747 H SER 51 37.718 46.961 39.901 1.00 0.00 H ATOM 748 HA SER 51 36.404 45.551 37.715 1.00 0.00 H ATOM 749 HB2 SER 51 38.670 46.820 36.799 1.00 0.00 H ATOM 750 HB3 SER 51 36.953 47.264 36.665 1.00 0.00 H ATOM 751 HG SER 51 38.217 48.894 37.661 1.00 0.00 H ATOM 752 N LEU 52 38.153 43.971 36.741 1.00 0.00 N ATOM 753 CA LEU 52 39.070 42.924 36.304 1.00 0.00 C ATOM 754 C LEU 52 40.136 43.481 35.369 1.00 0.00 C ATOM 755 O LEU 52 41.087 44.058 35.820 1.00 0.00 O ATOM 756 OXT LEU 52 40.026 43.341 34.183 1.00 0.00 O ATOM 757 CB LEU 52 38.294 41.794 35.617 1.00 0.00 C ATOM 758 CG LEU 52 36.777 42.000 35.531 1.00 0.00 C ATOM 759 CD1 LEU 52 36.394 43.330 36.167 1.00 0.00 C ATOM 760 CD2 LEU 52 36.339 41.951 34.075 1.00 0.00 C ATOM 761 H LEU 52 37.340 44.178 36.178 1.00 0.00 H ATOM 762 HA LEU 52 39.597 42.517 37.167 1.00 0.00 H ATOM 763 HB2 LEU 52 38.737 41.854 34.624 1.00 0.00 H ATOM 764 HB3 LEU 52 38.522 40.822 36.057 1.00 0.00 H ATOM 765 HG LEU 52 36.306 41.164 36.048 1.00 0.00 H ATOM 766 HD11 LEU 52 35.316 43.468 36.102 1.00 0.00 H ATOM 767 HD12 LEU 52 36.697 43.332 37.214 1.00 0.00 H ATOM 768 HD13 LEU 52 36.897 44.141 35.641 1.00 0.00 H ATOM 769 HD21 LEU 52 35.260 42.098 34.016 1.00 0.00 H ATOM 770 HD22 LEU 52 36.844 42.741 33.516 1.00 0.00 H ATOM 771 HD23 LEU 52 36.597 40.983 33.649 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 148 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 80.50 42.1 38 7.5 510 ARMSMC SECONDARY STRUCTURE . . 77.10 47.1 17 7.5 228 ARMSMC SURFACE . . . . . . . . 77.59 41.4 29 10.9 266 ARMSMC BURIED . . . . . . . . 89.23 44.4 9 3.7 244 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.10 5.6 18 8.3 217 ARMSSC1 RELIABLE SIDE CHAINS . 87.79 5.9 17 8.4 203 ARMSSC1 SECONDARY STRUCTURE . . 88.29 0.0 8 7.7 104 ARMSSC1 SURFACE . . . . . . . . 90.78 7.1 14 12.1 116 ARMSSC1 BURIED . . . . . . . . 72.79 0.0 4 4.0 101 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 133.49 0.0 11 6.2 177 ARMSSC2 RELIABLE SIDE CHAINS . 128.83 0.0 8 6.1 131 ARMSSC2 SECONDARY STRUCTURE . . 138.52 0.0 5 6.0 83 ARMSSC2 SURFACE . . . . . . . . 127.80 0.0 8 8.4 95 ARMSSC2 BURIED . . . . . . . . 147.59 0.0 3 3.7 82 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 145.50 25.0 4 7.0 57 ARMSSC3 RELIABLE SIDE CHAINS . 145.50 25.0 4 8.3 48 ARMSSC3 SECONDARY STRUCTURE . . 177.96 0.0 1 3.8 26 ARMSSC3 SURFACE . . . . . . . . 145.50 25.0 4 9.1 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 162.38 0.0 3 11.1 27 ARMSSC4 RELIABLE SIDE CHAINS . 162.38 0.0 3 11.1 27 ARMSSC4 SECONDARY STRUCTURE . . 162.80 0.0 1 8.3 12 ARMSSC4 SURFACE . . . . . . . . 162.38 0.0 3 13.0 23 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.70 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.70 20 7.8 256 CRMSCA CRN = ALL/NP . . . . . 0.3850 CRMSCA SECONDARY STRUCTURE . . 8.61 9 7.9 114 CRMSCA SURFACE . . . . . . . . 6.94 15 11.2 134 CRMSCA BURIED . . . . . . . . 9.62 5 4.1 122 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.02 100 8.0 1255 CRMSMC SECONDARY STRUCTURE . . 9.08 45 8.0 565 CRMSMC SURFACE . . . . . . . . 7.23 75 11.4 657 CRMSMC BURIED . . . . . . . . 10.02 25 4.2 598 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.08 68 6.7 1008 CRMSSC RELIABLE SIDE CHAINS . 8.62 60 7.0 858 CRMSSC SECONDARY STRUCTURE . . 8.46 33 6.5 504 CRMSSC SURFACE . . . . . . . . 8.85 49 9.6 512 CRMSSC BURIED . . . . . . . . 9.66 19 3.8 496 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.46 148 7.3 2032 CRMSALL SECONDARY STRUCTURE . . 8.81 69 7.2 960 CRMSALL SURFACE . . . . . . . . 7.91 109 10.4 1048 CRMSALL BURIED . . . . . . . . 9.83 39 4.0 984 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.781 1.000 0.500 20 7.8 256 ERRCA SECONDARY STRUCTURE . . 7.019 1.000 0.500 9 7.9 114 ERRCA SURFACE . . . . . . . . 6.407 1.000 0.500 15 11.2 134 ERRCA BURIED . . . . . . . . 7.904 1.000 0.500 5 4.1 122 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.978 1.000 0.500 100 8.0 1255 ERRMC SECONDARY STRUCTURE . . 7.350 1.000 0.500 45 8.0 565 ERRMC SURFACE . . . . . . . . 6.592 1.000 0.500 75 11.4 657 ERRMC BURIED . . . . . . . . 8.136 1.000 0.500 25 4.2 598 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.132 1.000 0.500 68 6.7 1008 ERRSC RELIABLE SIDE CHAINS . 7.855 1.000 0.500 60 7.0 858 ERRSC SECONDARY STRUCTURE . . 7.153 1.000 0.500 33 6.5 504 ERRSC SURFACE . . . . . . . . 8.092 1.000 0.500 49 9.6 512 ERRSC BURIED . . . . . . . . 8.234 1.000 0.500 19 3.8 496 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.433 1.000 0.500 148 7.3 2032 ERRALL SECONDARY STRUCTURE . . 7.243 1.000 0.500 69 7.2 960 ERRALL SURFACE . . . . . . . . 7.180 1.000 0.500 109 10.4 1048 ERRALL BURIED . . . . . . . . 8.140 1.000 0.500 39 4.0 984 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 7 18 20 256 DISTCA CA (P) 0.00 0.00 0.39 2.73 7.03 256 DISTCA CA (RMS) 0.00 0.00 2.38 3.83 6.16 DISTCA ALL (N) 0 0 5 51 120 148 2032 DISTALL ALL (P) 0.00 0.00 0.25 2.51 5.91 2032 DISTALL ALL (RMS) 0.00 0.00 2.58 4.04 6.13 DISTALL END of the results output