# STOCKHOLM 1.0 #=GF AC RF02679 #=GF ID Pistol #=GF DE Pistol ribozyme #=GF AU Argasinska J; 0000-0003-2678-2824 #=GF SE Weinberg Z #=GF SS Published; PMID:26167874 #=GF GA 34.00 #=GF TC 34.00 #=GF NC 33.80 #=GF TP Gene; ribozyme; #=GF BM cmbuild -F CM SEED #=GF CB cmcalibrate --mpi CM #=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 549862.597050 --mxsize #=GF SM 128 CM SEQDB #=GF DR SO; 0000374; ribozyme; #=GF DR GO; 0003824; catalytic activity; #=GF RN [1] #=GF RM 26167874 #=GF RT New classes of self-cleaving ribozymes revealed by comparative genomics #=GF RT analysis. #=GF RA Weinberg Z, Kim PB, Chen TH, Li S, Harris KA, Lunse CE, Breaker RR #=GF RL Nat Chem Biol. 2015;11:606-610. #=GF WK Pistol_ribozyme #=GF SQ 45 AGGO01000583.1/22-99 AGUCGUUGUGGCGACUAUAACCAAGCUCUU-UAAGCCACA-AGCGUUGCUGAUGAGG---UUUC----A--UAACAUCAGCAGGUAGAG AFHW01000093.1/13318-13252 ACUGGUUCGAGCCAGUAAAAAAA--GGCCGAUAAGCUCGA-AGCGUUCCACUCU---------U----------AGAGUGGAGGAGGCA AACY021048934.1/360-303 GCUCGGUGCGGCGAGCCUAAAUA-GUGCCU-UAGGCCGCA-CGCGUUAUG----------------------------CAUAGGUGGCA AACY020454584.1/604-676 ACUGGUUGCGGCCAGUAUAAAUA--GUCUU-UAAGCCGCA-AGCGUGUCCUGGAGU------UA----A--UCUUCCAGGGCGGUAGCA ADCZ01000007.1/277655-277723 AAUCGACUAGGCGAUUUUAAAUA--GGUGU-UAAGCCUAG-UGCGGUAAGAGGU----------AUAA------CCCUCUUGCGUCACG ADCZ01000007.1/276193-276256 AUUCGACUAGACGAGUAUAAAUA--GGUGU-CAGGUCUAG-UGCGGCAGGG-------------UUCU-----U---CCCUGCAUCAUA ADCZ01000057.1/1592-1655 GAUCGACUAGACGAUUAAAAACA--GGUGU-UAGGUCUAG-UGCGGCAGGG-------------UUCU-----U---CCCUGCGUCACA BABE01011365.1/336-273 AAUCGACUAGACGAUAAAAAACA--GGUGU-UAGGUCUAG-UGCGGCAGGG-------------UUCU-----U---CCCUGCGUCACA ADCZ01000007.1/276491-276554 AAUCGACUAGGCGAUUUAAAAUA--GGUGU-UAAGCCUAG-UGCGGCAGGG-------------UUCU-----U---CCCUGCAUCACA AACY020454254.1/1909-1844 AGUCGUUUGGGCGACUAUAAACA--GACGAAUAAGCCCAA-AGCGUUUCCUC------------GUAA--------GAGGAAGGACGGA ABPY01006745.1/33-98 ACAGGUUUGCGCCUGUAUAAAUA--GACAU-UAAGCGCAA-AGCGUCCCGCA------------AUUG-----U--UGCGGGGGUUGUA AACY023396520.1/1459-1527 AGUCGGUAGAGCGACUUUAAAAA--GGCAU-UAGGCUCUA-CGCGUUCCAGGAG----------GAAA------CUCCUGGAGGUUGUU AACY022753348.1/678-746 AGUCGACUAAGCGACUCUAAACA--GCAUU-UAGGCUUAG-UGCGUUCCCCUGC----------UCAC------GCGGGGGAGGUAUGG ACWC01000004.1/40409-40346 AGUCGUGGCGGCGACGUUAAAUA--GGCAU-UAAGCCGCC-AGCGUUCCCC-------------UCAU-----U---GGGGAGGUUGCA CP002400.1/1057607-1057686 CACCGUGGCGGCGGUGUAAAACA--AACAU-UAAGCCGCC-AGCGUCCCGGAACAAGG-CAUUU----UCCGAUUCUCCGGGGGUUGCA AACY020454584.1/1474-1546 ACUCGUCUGAGCGAGUAUAAAUA--GGCUU-UUGGCUCAG-AGCGAUUCCUGGAGC------GC-U--G---UUUCCAGGGAUGUAGCA FP929062.1/241377-241311 ACACGUUGCGCCGUGUAUAAAUA-GCCAGU-UAGGGCGCA-AGCGUCCCGGC------------AUUU-----U--GCCGGGGGUCUGG ADGC01049496.1/241-175 ACACGUUGCAACGUGUAUAAAUA-GCCCUU-UAGGUUGCA-AGCGUCCCGCC------------CAUG-----U--GGCGGGGGUAGGG ABFK02000017.1/466353-466289 AGCCGUUCGGGCGGCUAUAAACA--GACCU-CAGGCCCGA-AGCGUGGCGGC------------ACCU--------GCCGCCGGUGGUA AERA01001428.1/285-220 ACUCGUUAGGGCGAGUAUAAAUA--GCCAU-UAGGCCCUA-AGCGUCAAUGA------------UAAG-----C--UCAUUGGGUUGGA ABPY01006745.1/722-791 GCUGGUCACGGCCAGUAUAAACA--GACAU-UAAGCCGUG-AGCGUCUCCUGUU----------CUGU-----GAACGGGAGGGUUGUA ABPY01006746.1/503-437 AGAGGUCACAGCCUCUUAAAAUA--GACAU-UAAGCUGUG-AGCGUCUCCCGU-----------AUUA-------ACGGGAGGGUUGUA ABLX01143204.1/55-1 ACUCGACAGGGCGAGGCUAAAUA--GCAUU-UAGGCCCUG-AGCGGCUCCC-------------UUC----------GGGAG------- ABLX01198122.1/57-104 ACUCGUCAGAGCGAGUAUAAAUAGCUUUUU-UAGGCUCUG-AGCGUCCUC--------------------------------------- ABLX01246400.1/55-101 ACUCGUCAGAGCGAGUAUAAAUA-GCUUUU-UAGGCUCUGAAGCGUACC---------------------------------------- ABLX01165607.1/35-1 ACUCGUCAGAGCGAGUAUAAAUA-GCUUUU-UAGGCU---------------------------------------------------- ABNK01016853.1/25-90 AGUCGUCUGAGCGACUAUAAACA--GAGUUUUAGGCUCAG-AGCGCCUCCCC------------UUCG--------GGGGAGGGUACUA AGFS01138167.1/426-348 ACUCGACUAGACGAGUAUAAAC---UACAU-UAAGCCUAG-UGCGUUAUAGCCGUAAAUAAGAAGUA-----AACGGCUAUAGGUUGUA ABLZ01250225.1/97-32 AGUCGUUAGGGCGACUAUAAACA--GACAU-UAAGCCCUA-AGCGUCCCCUA------------CUAG-----C--UAGGGGGGUUGUA BAAU01010303.1/537-465 GCUCGUCUGGGCGAGGGUAAAUA--GUAAU-UAGGCCCAG-AGCGUCUUGGCCGGG------AG----C--UGCCGGUCAGGGGUUUAG BAAU01005155.1/240-168 GCUCGUCUGGGCGAGGGUAAAUA--GUAAU-UAGGCCCAG-AGCGUCUUGGCCGGG------AG----C--UGCCGGUCAGGGGUUUAG BAAV01005253.1/703-639 ACUCGUCUGGGCGAGUAUAAAUA--GUAAU-UAGGCCUAG-AGCGUCCCGGU------------AGC--------UGCCGGGGGGUUAG AACY020454584.1/937-1000 ACUCGUCUGAGCGAGUAUAAAC---CACUU-UAGGCUCAG-AGCGUCCCCAC------------UUCG--------GUGGGGGGUAGCA AACY020846719.1/108-178 ACUCGACUAAGCGAGUAUAAAUA--GGCAU-UAGGCUUAG-AGCGUUCCAAUGUU--------G-UGA-----AACAUCGGAGGUUGUU AACY022661277.1/934-864 ACUGGACUACGCCAGUAUAAAUA--GGCAU-UAAGCGUAG-UGCGUUCCAAUGUU--------G-UGA-----AACAUCGGAGGUUGUU AACY020846719.1/529-597 ACUGGACUACGCCAGUAUAAAUA--GGCAU-UAAGCGUAG-UGCGUUCCAGUCU----------UCAC------AGACUGGAGGUUGUU AACY020060774.1/2553-2619 AGUCGACUAAGCGACUAUAAACA--GGCAU-UAGGCUUAG-AGCGUUCCAGUC-----------UUCG-------GACUGGAGGUUGUU CP000817.1/2010936-2011013 ACUCGACUAAGCGAGUAUAAACA--GGCAU-UAGGCUUAG-AGCGUUCUCACGUUAUC--UGAA----UG-AUGAUGUGAGAGGUUGCA AACY020496190.1/1503-1438 AGUCGUCUAAGCGACUCUAAAAA--GGCUU-UAAGCUUAG-AGCGUUCGCCC------------AUAU-----U--GGGCGAGGUUGUA AACY022607213.1/736-672 ACUCGACUAAGCGAGAAUAAAAA--GGCUU-UAGGCUUAG-AGCGUUCGCCC------------UUCG--------GGGCGGGGUAGUA AFHJ01000001.1/939500-939435 AGUCGUCACGGCGACUCUAAACA--GGCUU-UAGGCCGUG-AGCGUCGCCCCC------------ACA-------GGGGGCGGGUGGCA FP929053.1/1669026-1668956 AGUGGUCACAGCCACUAUAAACA-GGGCUU-UAAGCUGUG-AGCGUUGACCGUC----------ACAA-----CGGCGGUCAGGUAGUC AFOX01000025.1/1981-1912 ACUCGUCUGAGCGAGUAUAAACA-GGUCAU-UAAGCUCAG-AGCGUUCACCGGG----------AUCA------UUCGGUGAGGUUGGC HE577054.1/3246821-3246752 ACUCGUCUGAGCGAGUAUAAACA-GGUCAU-UAAGCUCAG-AGCGUUCACCGGG----------AUCA------UGCGGUGAGGUUGGC CP000154.1/3364237-3364168 GUUCGUCUGAGCGAACGCAAACA-GGCCAU-UAAGCUCAG-AGCGUUCACUGGA----------UUCG------UCCAGUGAGAUUGGC #=GC SS_cons <<<<__AAAAA_>>>>-------..<<<<-.----aaaaa.----<<<<<<<<<....................>>>>>>>>>-->>>> #=GC RF acUCGUCuggGCGAguAUAAAuA..cgCaU.UAgGCccaG.AGCGUcccggcgg..........uUau.....uccgccgggGGUuGcg //