#!/bin/sh

MODEL='*'
if [ $2 ]
then
	MODEL=$2
fi

string=$1
substring=${string:2:3}

echo "Upload lga_sda_4"
./upload_tasks.pl --target=$1 --model1=T0$substring-TR.pdb --model2=$MODEL --plugin=lga_sda_4 --models_dir='/local/CASP13/MODELS/'$1 --results='/local/CASP13/RESULTS/LGA/4A/DATA/'$1'/;/local/CASP13/RESULTS/LGA/4A/ROTATED/'$1'/;/local/CASP13/RESULTS/CASP13/LGA/4A/ALIGNMENT/'$1'/' --result_extension=lga

echo "Upload lga_sda_4_tr"
./upload_tasks.pl --target=$1 --model1=T0$substring-TR.pdb --model2=$MODEL --plugin=lga_sda_4_tr --models_dir='/local/CASP13/MODELS/'$1 --results='/local/CASP13/RESULTS/LGA/4A_TR/DATA/'$1'/;/local/CASP13/RESULTS/LGA/4A_TR/ROTATED/'$1'/;/local/CASP13/RESULTS/CASP13/LGA/4A_TR/ALIGNMENT/'$1'/' --result_extension=lga

echo "Upload LVR"
./upload_tasks.pl --target=$1 --model1=T0$substring-TR.pdb --model2=$MODEL --plugin=LVR --targets_dir=/local/CASP13/TARGETS/ --models_dir='/local/CASP13/MODELS/'$1 --results='/local/CASP13/RESULTS/LVR/'$1'/' --result_extension=csv