From caora@plu.edu Thu Sep 13 15:42:14 2018 Return-Path: X-Original-To: models@predictioncenter.org Delivered-To: models@predictioncenter.org Received: from ham-2.plu.edu (ham-2.plu.edu [152.117.1.19]) by predictioncenter5.genomecenter.ucdavis.edu (Postfix) with ESMTP id 62B3237C20D3 for ; Thu, 13 Sep 2018 15:42:14 -0700 (PDT) Received: from ham-2.plu.edu (localhost [127.0.0.1]) by ham-2.plu.edu (Postfix) with ESMTP id 1EFEE1FEF4 for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) X-Virus-Scanned: amavisd-new at plu.edu Received: from ham-2.plu.edu ([127.0.0.1]) by ham-2.plu.edu (ham-2.plu.edu [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id zQZzq6ZPZunr for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) Received: from osiris.localdomain (osiris.cs.plu.edu [152.117.176.10]) by ham-2.plu.edu (Postfix) with ESMTP id EE0D21FEE4 for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) Received: from localhost (localhost [127.0.0.1]) by osiris.localdomain (Postfix) with SMTP id DFABD1CCAD0360 for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) To: models@predictioncenter.org From: caora@plu.edu Reply-to: Cao-server@osiris.localdomain Subject: Cao-server Ab-Initio 3D Prediction for casp3.pdb Message-Id: <20180913224211.DFABD1CCAD0360@osiris.localdomain> Date: Thu, 13 Sep 2018 15:42:11 -0700 (PDT) PFRMAT TS TARGET TargetName AUTHOR 3616-2337-5414 METHOD Ab initio fragment based protein structure prediction with deep learning and contact prediction. REMARK 1 Frag8_TargetName_127.pdb REMARK 2 model selection based on both single model quality assessment method DeepQA and Qprob. MODEL 3 PARENT N/A ATOM 1 N ALA 1 -14.980 -0.051 -9.189 1.00 0.60 ATOM 2 CA ALA 1 -15.010 1.070 -10.109 1.00 0.60 ATOM 3 CB ALA 1 -14.545 2.329 -9.386 1.00 0.60 ATOM 4 C ALA 1 -14.091 0.798 -11.288 1.00 0.60 ATOM 5 O ALA 1 -13.700 1.709 -12.066 1.00 0.60 ATOM 6 N PHE 2 -13.730 -0.473 -11.439 1.00 0.83 ATOM 7 CA PHE 2 -12.874 -0.858 -12.544 1.00 0.83 ATOM 8 CB PHE 2 -13.305 -0.112 -13.801 1.00 0.83 ATOM 9 CG PHE 2 -12.675 -2.802 -14.168 1.00 0.83 ATOM 10 CD1 PHE 2 -12.947 -4.115 -13.773 1.00 0.83 ATOM 11 CD2 PHE 2 -11.613 -2.567 -15.048 1.00 0.83 ATOM 12 CE1 PHE 2 -12.180 -5.172 -14.247 1.00 0.83 ATOM 13 CE2 PHE 2 -10.840 -3.626 -15.524 1.00 0.83 ATOM 14 CZ PHE 2 -11.126 -4.928 -15.119 1.00 0.83 ATOM 15 C PHE 2 -11.428 -0.515 -12.225 1.00 0.83 ATOM 16 O PHE 2 -10.848 -0.925 -11.184 1.00 0.83 ATOM 17 N CYS 3 -10.820 0.250 -13.127 1.00 0.04 ATOM 18 CA CYS 3 -9.445 0.663 -12.920 1.00 0.04 ATOM 19 CB CYS 3 -9.017 1.584 -14.057 1.00 0.04 ATOM 20 SG CYS 3 -8.929 -0.112 -15.597 1.00 0.04 ATOM 21 C CYS 3 -9.318 1.402 -11.598 1.00 0.04 ATOM 22 O CYS 3 -8.295 1.314 -10.868 1.00 0.04 ATOM 23 N ASP 4 -10.368 2.149 -11.268 1.00 0.64 ATOM 24 CA ASP 4 -10.352 2.923 -10.042 1.00 0.64 ATOM 25 CB ASP 4 -11.539 3.879 -10.032 1.00 0.64 ATOM 26 CG ASP 4 -11.484 5.156 -10.571 1.00 0.64 ATOM 27 OD1 ASP 4 -10.353 5.549 -10.933 1.00 0.64 ATOM 28 OD2 ASP 4 -12.503 5.873 -10.689 1.00 0.64 ATOM 29 C ASP 4 -10.440 1.996 -8.841 1.00 0.64 ATOM 30 O ASP 4 -9.922 2.279 -7.728 1.00 0.64 ATOM 31 N GLU 5 -11.105 0.864 -9.052 1.00 0.51 ATOM 32 CA GLU 5 -11.195 -0.132 -8.001 1.00 0.51 ATOM 33 CB GLU 5 -12.128 -1.252 -8.445 1.00 0.51 ATOM 34 CG GLU 5 -12.281 -2.365 -7.415 1.00 0.51 ATOM 35 CD GLU 5 -13.355 -3.387 -7.727 1.00 0.51 ATOM 36 OE1 GLU 5 -13.783 -3.496 -8.881 1.00 0.51 ATOM 37 OE2 GLU 5 -13.690 -4.153 -6.793 1.00 0.51 ATOM 38 C GLU 5 -9.818 -0.707 -7.712 1.00 0.51 ATOM 39 O GLU 5 -9.390 -0.881 -6.540 1.00 0.51 ATOM 40 N LEU 6 -9.099 -1.013 -8.788 1.00 0.24 ATOM 41 CA LEU 6 -7.759 -1.547 -8.637 1.00 0.24 ATOM 42 CB LEU 6 -7.147 -1.772 -10.015 1.00 0.24 ATOM 43 CG LEU 6 -7.818 -3.222 -10.650 1.00 0.24 ATOM 44 CD1 LEU 6 -7.244 -3.419 -12.044 1.00 0.24 ATOM 45 CD2 LEU 6 -7.542 -4.422 -9.757 1.00 0.24 ATOM 46 C LEU 6 -6.895 -0.571 -7.856 1.00 0.24 ATOM 47 O LEU 6 -6.068 -0.948 -6.984 1.00 0.24 ATOM 48 N MET 7 -7.078 0.711 -8.160 1.00 0.97 ATOM 49 CA MET 7 -6.291 1.733 -7.498 1.00 0.97 ATOM 50 CB MET 7 -6.613 3.093 -8.108 1.00 0.97 ATOM 51 CG MET 7 -5.967 3.236 -9.483 1.00 0.97 ATOM 52 SD MET 7 -6.466 4.673 -10.421 1.00 0.97 ATOM 53 CE MET 7 -5.428 5.946 -9.653 1.00 0.97 ATOM 54 C MET 7 -6.615 1.757 -6.013 1.00 0.97 ATOM 55 O MET 7 -5.723 1.842 -5.128 1.00 0.97 ATOM 56 N LYS 8 -7.909 1.682 -5.718 1.00 0.71 ATOM 57 CA LYS 8 -8.340 1.694 -4.334 1.00 0.71 ATOM 58 CB LYS 8 -9.860 1.595 -4.276 1.00 0.71 ATOM 59 CG LYS 8 -10.304 3.243 -4.671 1.00 0.71 ATOM 60 CD LYS 8 -11.742 3.500 -4.302 1.00 0.71 ATOM 61 CE LYS 8 -12.312 4.807 -4.837 1.00 0.71 ATOM 62 NZ LYS 8 -13.700 4.599 -5.354 1.00 0.71 ATOM 63 C LYS 8 -7.729 0.517 -3.590 1.00 0.71 ATOM 64 O LYS 8 -7.252 0.625 -2.429 1.00 0.71 ATOM 65 N ASP 9 -7.737 -0.634 -4.255 1.00 0.33 ATOM 66 CA ASP 9 -7.222 -1.837 -3.630 1.00 0.33 ATOM 67 CB ASP 9 -7.461 -3.028 -4.551 1.00 0.33 ATOM 68 CG ASP 9 -8.891 -3.428 -4.783 1.00 0.33 ATOM 69 OD1 ASP 9 -9.796 -2.953 -4.066 1.00 0.33 ATOM 70 OD2 ASP 9 -9.116 -4.233 -5.715 1.00 0.33 ATOM 71 C ASP 9 -5.731 -1.690 -3.373 1.00 0.33 ATOM 72 O ASP 9 -5.141 -2.302 -2.443 1.00 0.33 ATOM 73 N THR 10 -5.095 -0.868 -4.203 1.00 0.14 ATOM 74 CA THR 10 -3.665 -0.670 -4.073 1.00 0.14 ATOM 75 CB THR 10 -3.073 -0.343 -5.439 1.00 0.14 ATOM 76 OG1 THR 10 -3.346 -0.985 -6.462 1.00 0.14 ATOM 77 CG2 THR 10 -1.556 0.054 -5.252 1.00 0.14 ATOM 78 C THR 10 -3.383 0.476 -3.114 1.00 0.14 ATOM 79 O THR 10 -2.225 0.739 -2.695 1.00 0.14 ATOM 80 N LYS 11 -4.452 1.180 -2.751 1.00 0.52 ATOM 81 CA LYS 11 -4.303 2.318 -1.865 1.00 0.52 ATOM 82 CB LYS 11 -5.637 3.046 -1.749 1.00 0.52 ATOM 83 CG LYS 11 -6.145 3.898 -2.680 1.00 0.52 ATOM 84 CD LYS 11 -7.081 4.938 -2.079 1.00 0.52 ATOM 85 CE LYS 11 -8.057 5.494 -3.115 1.00 0.52 ATOM 86 NZ LYS 11 -9.039 6.437 -2.489 1.00 0.52 ATOM 87 C LYS 11 -3.862 1.851 -0.488 1.00 0.52 ATOM 88 O LYS 11 -3.392 2.638 0.376 1.00 0.52 ATOM 89 N THR 12 -4.010 0.549 -0.262 1.00 0.16 ATOM 90 CA THR 12 -3.629 -0.013 1.019 1.00 0.16 ATOM 91 CB THR 12 -4.160 -1.438 1.125 1.00 0.16 ATOM 92 OG1 THR 12 -3.889 -2.282 0.224 1.00 0.16 ATOM 93 CG2 THR 12 -5.745 -1.277 1.281 1.00 0.16 ATOM 94 C THR 12 -2.115 -0.028 1.151 1.00 0.16 ATOM 95 O THR 12 -1.533 -0.065 2.268 1.00 0.16 ATOM 96 N TRP 13 -1.450 0.000 0.000 1.00 0.21 ATOM 97 CA TRP 13 0.000 0.000 0.000 1.00 0.21 ATOM 98 CB TRP 13 0.506 -0.722 -1.244 1.00 0.21 ATOM 99 CG TRP 13 0.306 -1.352 -2.118 1.00 0.21 ATOM 100 CD1 TRP 13 -0.533 -1.605 -3.160 1.00 0.21 ATOM 101 CD2 TRP 13 0.903 -2.608 -1.767 1.00 0.21 ATOM 102 NE1 TRP 13 -0.503 -2.944 -3.481 1.00 0.21 ATOM 103 CE2 TRP 13 0.371 -3.582 -2.641 1.00 0.21 ATOM 104 CE3 TRP 13 1.834 -3.005 -0.801 1.00 0.21 ATOM 105 CZ2 TRP 13 0.739 -4.932 -2.576 1.00 0.21 ATOM 106 CZ3 TRP 13 2.201 -4.349 -0.735 1.00 0.21 ATOM 107 CH2 TRP 13 1.652 -5.294 -1.619 1.00 0.21 ATOM 108 C TRP 13 0.520 1.428 0.000 1.00 0.21 ATOM 109 O TRP 13 0.454 2.161 -1.010 1.00 0.21 ATOM 110 OXT TRP 13 -0.232 1.929 1.253 1.00 0.21 TER END