From caora@plu.edu Thu Sep 13 15:42:12 2018 Return-Path: X-Original-To: models@predictioncenter.org Delivered-To: models@predictioncenter.org Received: from ham-2.plu.edu (ham-2.plu.edu [152.117.1.19]) by predictioncenter5.genomecenter.ucdavis.edu (Postfix) with ESMTP id 2C8EC37C20CD for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) Received: from ham-2.plu.edu (localhost [127.0.0.1]) by ham-2.plu.edu (Postfix) with ESMTP id EB7FA1FEE2 for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) X-Virus-Scanned: amavisd-new at plu.edu Received: from ham-2.plu.edu ([127.0.0.1]) by ham-2.plu.edu (ham-2.plu.edu [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id CaqWwENBg8MA for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) Received: from osiris.localdomain (osiris.cs.plu.edu [152.117.176.10]) by ham-2.plu.edu (Postfix) with ESMTP id C71F61FED8 for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) Received: from localhost (localhost [127.0.0.1]) by osiris.localdomain (Postfix) with SMTP id B3B531CCAD0360 for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) To: models@predictioncenter.org From: caora@plu.edu Reply-to: Cao-server@osiris.localdomain Subject: Cao-server Ab-Initio 3D Prediction for casp1.pdb Message-Id: <20180913224211.B3B531CCAD0360@osiris.localdomain> Date: Thu, 13 Sep 2018 15:42:11 -0700 (PDT) PFRMAT TS TARGET TargetName AUTHOR 3616-2337-5414 METHOD Ab initio fragment based protein structure prediction with deep learning and contact prediction. REMARK 1 Frag8_TargetName_13.pdb REMARK 2 model selection based on both single model quality assessment method DeepQA and Qprob. MODEL 1 PARENT N/A ATOM 1 N ALA 1 -18.479 -4.191 -7.226 1.00 0.36 ATOM 2 CA ALA 1 -17.620 -4.261 -8.392 1.00 0.36 ATOM 3 CB ALA 1 -17.763 -2.979 -9.203 1.00 0.36 ATOM 4 C ALA 1 -16.172 -4.426 -7.961 1.00 0.36 ATOM 5 O ALA 1 -15.666 -3.761 -7.019 1.00 0.36 ATOM 6 N PHE 2 -15.478 -5.326 -8.653 1.00 0.54 ATOM 7 CA PHE 2 -14.311 -5.951 -8.064 1.00 0.54 ATOM 8 CB PHE 2 -14.193 -7.383 -8.573 1.00 0.54 ATOM 9 CG PHE 2 -15.189 -8.336 -7.869 1.00 0.54 ATOM 10 CD1 PHE 2 -15.465 -8.305 -6.497 1.00 0.54 ATOM 11 CD2 PHE 2 -15.841 -9.279 -8.672 1.00 0.54 ATOM 12 CE1 PHE 2 -16.378 -9.203 -5.929 1.00 0.54 ATOM 13 CE2 PHE 2 -16.744 -10.186 -8.126 1.00 0.54 ATOM 14 CZ PHE 2 -17.019 -10.149 -6.746 1.00 0.54 ATOM 15 C PHE 2 -13.059 -5.177 -8.444 1.00 0.54 ATOM 16 O PHE 2 -12.143 -4.923 -7.617 1.00 0.54 ATOM 17 N CYS 3 -13.003 -4.788 -9.715 1.00 0.87 ATOM 18 CA CYS 3 -11.861 -4.032 -10.192 1.00 0.87 ATOM 19 CB CYS 3 -12.083 -3.646 -11.649 1.00 0.87 ATOM 20 SG CYS 3 -11.570 -5.554 -12.453 1.00 0.87 ATOM 21 C CYS 3 -11.685 -2.774 -9.358 1.00 0.87 ATOM 22 O CYS 3 -10.557 -2.373 -8.967 1.00 0.87 ATOM 23 N ASP 4 -12.812 -2.127 -9.072 1.00 0.40 ATOM 24 CA ASP 4 -12.779 -0.956 -8.218 1.00 0.40 ATOM 25 CB ASP 4 -14.187 -0.386 -8.087 1.00 0.40 ATOM 26 CG ASP 4 -14.148 0.885 -9.287 1.00 0.40 ATOM 27 OD1 ASP 4 -13.384 0.830 -10.279 1.00 0.40 ATOM 28 OD2 ASP 4 -14.909 1.850 -9.078 1.00 0.40 ATOM 29 C ASP 4 -12.258 -1.332 -6.840 1.00 0.40 ATOM 30 O ASP 4 -11.327 -0.701 -6.273 1.00 0.40 ATOM 31 N GLU 5 -12.859 -2.378 -6.278 1.00 0.03 ATOM 32 CA GLU 5 -12.472 -2.808 -4.949 1.00 0.03 ATOM 33 CB GLU 5 -13.303 -4.021 -4.548 1.00 0.03 ATOM 34 CG GLU 5 -14.708 -3.511 -4.004 1.00 0.03 ATOM 35 CD GLU 5 -15.554 -4.697 -3.592 1.00 0.03 ATOM 36 OE1 GLU 5 -15.635 -5.668 -4.374 1.00 0.03 ATOM 37 OE2 GLU 5 -16.155 -4.653 -2.489 1.00 0.03 ATOM 38 C GLU 5 -10.998 -3.179 -4.930 1.00 0.03 ATOM 39 O GLU 5 -10.253 -2.941 -3.943 1.00 0.03 ATOM 40 N LEU 6 -10.554 -3.772 -6.034 1.00 0.06 ATOM 41 CA LEU 6 -9.157 -4.145 -6.145 1.00 0.06 ATOM 42 CB LEU 6 -8.919 -4.819 -7.492 1.00 0.06 ATOM 43 CG LEU 6 -9.490 -6.427 -7.388 1.00 0.06 ATOM 44 CD1 LEU 6 -9.296 -7.072 -8.751 1.00 0.06 ATOM 45 CD2 LEU 6 -8.785 -7.212 -6.292 1.00 0.06 ATOM 46 C LEU 6 -8.279 -2.909 -6.038 1.00 0.06 ATOM 47 O LEU 6 -7.188 -2.906 -5.408 1.00 0.06 ATOM 48 N MET 7 -8.748 -1.830 -6.659 1.00 0.65 ATOM 49 CA MET 7 -7.988 -0.596 -6.643 1.00 0.65 ATOM 50 CB MET 7 -8.702 0.449 -7.493 1.00 0.65 ATOM 51 CG MET 7 -8.520 0.143 -8.983 1.00 0.65 ATOM 52 SD MET 7 -9.507 1.134 -10.096 1.00 0.65 ATOM 53 CE MET 7 -8.518 2.652 -10.151 1.00 0.65 ATOM 54 C MET 7 -7.858 -0.083 -5.218 1.00 0.65 ATOM 55 O MET 7 -6.790 0.414 -4.772 1.00 0.65 ATOM 56 N LYS 8 -8.957 -0.199 -4.477 1.00 0.81 ATOM 57 CA LYS 8 -8.981 0.332 -3.128 1.00 0.81 ATOM 58 CB LYS 8 -10.371 0.140 -2.534 1.00 0.81 ATOM 59 CG LYS 8 -11.314 1.420 -3.057 1.00 0.81 ATOM 60 CD LYS 8 -12.747 0.965 -2.831 1.00 0.81 ATOM 61 CE LYS 8 -13.731 2.118 -2.715 1.00 0.81 ATOM 62 NZ LYS 8 -15.048 1.640 -2.196 1.00 0.81 ATOM 63 C LYS 8 -7.960 -0.393 -2.266 1.00 0.81 ATOM 64 O LYS 8 -7.212 0.211 -1.452 1.00 0.81 ATOM 65 N ASP 9 -7.915 -1.711 -2.436 1.00 0.02 ATOM 66 CA ASP 9 -6.965 -2.507 -1.684 1.00 0.02 ATOM 67 CB ASP 9 -7.206 -3.985 -1.969 1.00 0.02 ATOM 68 CG ASP 9 -8.625 -4.447 -1.325 1.00 0.02 ATOM 69 OD1 ASP 9 -9.276 -3.710 -0.556 1.00 0.02 ATOM 70 OD2 ASP 9 -9.026 -5.578 -1.682 1.00 0.02 ATOM 71 C ASP 9 -5.546 -2.140 -2.086 1.00 0.02 ATOM 72 O ASP 9 -4.641 -1.909 -1.240 1.00 0.02 ATOM 73 N THR 10 -5.331 -2.082 -3.397 1.00 0.46 ATOM 74 CA THR 10 -4.015 -1.741 -3.901 1.00 0.46 ATOM 75 CB THR 10 -4.061 -1.660 -5.422 1.00 0.46 ATOM 76 OG1 THR 10 -4.463 -2.646 -6.104 1.00 0.46 ATOM 77 CG2 THR 10 -2.612 -1.183 -5.879 1.00 0.46 ATOM 78 C THR 10 -3.573 -0.400 -3.338 1.00 0.46 ATOM 79 O THR 10 -2.362 -0.058 -3.275 1.00 0.46 ATOM 80 N LYS 11 -4.560 0.385 -2.915 1.00 0.99 ATOM 81 CA LYS 11 -4.267 1.716 -2.422 1.00 0.99 ATOM 82 CB LYS 11 -5.486 2.609 -2.623 1.00 0.99 ATOM 83 CG LYS 11 -5.096 4.138 -2.034 1.00 0.99 ATOM 84 CD LYS 11 -6.288 5.013 -1.762 1.00 0.99 ATOM 85 CE LYS 11 -6.025 5.969 -0.619 1.00 0.99 ATOM 86 NZ LYS 11 -7.159 6.102 0.307 1.00 0.99 ATOM 87 C LYS 11 -3.923 1.658 -0.942 1.00 0.99 ATOM 88 O LYS 11 -3.607 2.683 -0.281 1.00 0.99 ATOM 89 N THR 12 -3.979 0.446 -0.399 1.00 0.12 ATOM 90 CA THR 12 -3.625 0.259 0.994 1.00 0.12 ATOM 91 CB THR 12 -4.260 -1.028 1.509 1.00 0.12 ATOM 92 OG1 THR 12 -3.679 -2.187 0.804 1.00 0.12 ATOM 93 CG2 THR 12 -5.621 -1.147 1.644 1.00 0.12 ATOM 94 C THR 12 -2.115 0.168 1.139 1.00 0.12 ATOM 95 O THR 12 -1.536 0.247 2.256 1.00 0.12 ATOM 96 N TRP 13 -1.450 0.000 0.000 1.00 0.44 ATOM 97 CA TRP 13 0.000 0.000 0.000 1.00 0.44 ATOM 98 CB TRP 13 0.506 -0.722 -1.244 1.00 0.44 ATOM 99 CG TRP 13 2.015 -0.445 -1.546 1.00 0.44 ATOM 100 CD1 TRP 13 2.749 0.678 -1.800 1.00 0.44 ATOM 101 CD2 TRP 13 2.959 -1.522 -1.450 1.00 0.44 ATOM 102 NE1 TRP 13 4.085 0.374 -1.854 1.00 0.44 ATOM 103 CE2 TRP 13 4.243 -0.972 -1.645 1.00 0.44 ATOM 104 CE3 TRP 13 2.846 -2.901 -1.212 1.00 0.44 ATOM 105 CZ2 TRP 13 5.410 -1.750 -1.609 1.00 0.44 ATOM 106 CZ3 TRP 13 4.010 -3.675 -1.178 1.00 0.44 ATOM 107 CH2 TRP 13 5.273 -3.094 -1.374 1.00 0.44 ATOM 108 C TRP 13 0.520 1.428 0.000 1.00 0.44 ATOM 109 O TRP 13 -0.116 2.368 -0.522 1.00 0.44 ATOM 110 OXT TRP 13 -0.338 2.387 -0.394 1.00 0.44 TER END