From caora@plu.edu Thu Sep 13 15:42:15 2018 Return-Path: X-Original-To: models@predictioncenter.org Delivered-To: models@predictioncenter.org Received: from ham-2.plu.edu (ham-2.plu.edu [152.117.1.19]) by predictioncenter5.genomecenter.ucdavis.edu (Postfix) with ESMTP id 183AD37C20CD for ; Thu, 13 Sep 2018 15:42:15 -0700 (PDT) Received: from ham-2.plu.edu (localhost [127.0.0.1]) by ham-2.plu.edu (Postfix) with ESMTP id 327D41FEFB for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) X-Virus-Scanned: amavisd-new at plu.edu Received: from ham-2.plu.edu ([127.0.0.1]) by ham-2.plu.edu (ham-2.plu.edu [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id BK2FskpxXOqF for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) Received: from osiris.localdomain (osiris.cs.plu.edu [152.117.176.10]) by ham-2.plu.edu (Postfix) with ESMTP id 0ED6C1FEEB for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) Received: from localhost (localhost [127.0.0.1]) by osiris.localdomain (Postfix) with SMTP id 011841CCAD0360 for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) To: models@predictioncenter.org From: caora@plu.edu Reply-to: Cao-server@osiris.localdomain Subject: Cao-server Ab-Initio 3D Prediction for casp4.pdb Message-Id: <20180913224212.011841CCAD0360@osiris.localdomain> Date: Thu, 13 Sep 2018 15:42:12 -0700 (PDT) PFRMAT TS TARGET TargetName AUTHOR 3616-2337-5414 METHOD Ab initio fragment based protein structure prediction with deep learning and contact prediction. REMARK 1 Frag8_TargetName_471.pdb REMARK 2 model selection based on both single model quality assessment method DeepQA and Qprob. MODEL 4 PARENT N/A ATOM 1 N ALA 1 -3.313 3.911 13.283 1.00 0.63 ATOM 2 CA ALA 1 -2.500 5.014 12.810 1.00 0.63 ATOM 3 CB ALA 1 -1.499 4.500 11.781 1.00 0.63 ATOM 4 C ALA 1 -3.383 6.072 12.169 1.00 0.63 ATOM 5 O ALA 1 -2.924 6.975 11.420 1.00 0.63 ATOM 6 N PHE 2 -4.678 5.974 12.457 1.00 0.99 ATOM 7 CA PHE 2 -5.616 6.942 11.922 1.00 0.99 ATOM 8 CB PHE 2 -4.999 8.334 11.991 1.00 0.99 ATOM 9 CG PHE 2 -7.686 8.182 12.721 1.00 0.99 ATOM 10 CD1 PHE 2 -8.618 7.577 13.568 1.00 0.99 ATOM 11 CD2 PHE 2 -8.143 9.027 11.704 1.00 0.99 ATOM 12 CE1 PHE 2 -9.979 7.812 13.408 1.00 0.99 ATOM 13 CE2 PHE 2 -9.508 9.262 11.539 1.00 0.99 ATOM 14 CZ PHE 2 -10.424 8.651 12.394 1.00 0.99 ATOM 15 C PHE 2 -5.942 6.606 10.476 1.00 0.99 ATOM 16 O PHE 2 -6.377 5.477 10.125 1.00 0.99 ATOM 17 N CYS 3 -5.733 7.593 9.609 1.00 0.29 ATOM 18 CA CYS 3 -5.985 7.382 8.197 1.00 0.29 ATOM 19 CB CYS 3 -5.600 8.637 7.422 1.00 0.29 ATOM 20 SG CYS 3 -7.387 9.845 8.198 1.00 0.29 ATOM 21 C CYS 3 -5.165 6.206 7.692 1.00 0.29 ATOM 22 O CYS 3 -5.589 5.415 6.808 1.00 0.29 ATOM 23 N ASP 4 -3.966 6.076 8.252 1.00 0.73 ATOM 24 CA ASP 4 -3.081 5.007 7.830 1.00 0.73 ATOM 25 CB ASP 4 -1.695 5.235 8.423 1.00 0.73 ATOM 26 CG ASP 4 -0.718 5.988 7.787 1.00 0.73 ATOM 27 OD1 ASP 4 -0.978 6.347 6.618 1.00 0.73 ATOM 28 OD2 ASP 4 0.359 6.290 8.349 1.00 0.73 ATOM 29 C ASP 4 -3.619 3.668 8.306 1.00 0.73 ATOM 30 O ASP 4 -3.415 2.595 7.679 1.00 0.73 ATOM 31 N GLU 5 -4.322 3.714 9.435 1.00 0.82 ATOM 32 CA GLU 5 -4.946 2.510 9.949 1.00 0.82 ATOM 33 CB GLU 5 -5.556 2.802 11.316 1.00 0.82 ATOM 34 CG GLU 5 -6.255 1.602 11.942 1.00 0.82 ATOM 35 CD GLU 5 -6.688 1.789 13.382 1.00 0.82 ATOM 36 OE1 GLU 5 -6.792 2.929 13.848 1.00 0.82 ATOM 37 OE2 GLU 5 -7.020 0.755 14.007 1.00 0.82 ATOM 38 C GLU 5 -6.038 2.044 9.000 1.00 0.82 ATOM 39 O GLU 5 -6.175 0.837 8.666 1.00 0.82 ATOM 40 N LEU 6 -6.837 3.006 8.547 1.00 0.55 ATOM 41 CA LEU 6 -7.901 2.686 7.615 1.00 0.55 ATOM 42 CB LEU 6 -8.636 3.964 7.229 1.00 0.55 ATOM 43 CG LEU 6 -9.687 4.372 8.527 1.00 0.55 ATOM 44 CD1 LEU 6 -10.383 5.673 8.160 1.00 0.55 ATOM 45 CD2 LEU 6 -10.690 3.265 8.821 1.00 0.55 ATOM 46 C LEU 6 -7.322 2.040 6.367 1.00 0.55 ATOM 47 O LEU 6 -7.877 1.069 5.788 1.00 0.55 ATOM 48 N MET 7 -6.186 2.577 5.932 1.00 0.15 ATOM 49 CA MET 7 -5.552 2.062 4.734 1.00 0.15 ATOM 50 CB MET 7 -4.339 2.920 4.394 1.00 0.15 ATOM 51 CG MET 7 -4.770 4.260 3.804 1.00 0.15 ATOM 52 SD MET 7 -3.465 5.464 3.596 1.00 0.15 ATOM 53 CE MET 7 -2.715 4.874 2.055 1.00 0.15 ATOM 54 C MET 7 -5.107 0.626 4.957 1.00 0.15 ATOM 55 O MET 7 -5.291 -0.281 4.102 1.00 0.15 ATOM 56 N LYS 8 -4.509 0.398 6.123 1.00 0.60 ATOM 57 CA LYS 8 -4.043 -0.936 6.450 1.00 0.60 ATOM 58 CB LYS 8 -3.402 -0.922 7.833 1.00 0.60 ATOM 59 CG LYS 8 -1.843 -0.218 7.458 1.00 0.60 ATOM 60 CD LYS 8 -0.877 -0.452 8.590 1.00 0.60 ATOM 61 CE LYS 8 0.421 0.337 8.491 1.00 0.60 ATOM 62 NZ LYS 8 0.801 0.889 9.829 1.00 0.60 ATOM 63 C LYS 8 -5.209 -1.910 6.445 1.00 0.60 ATOM 64 O LYS 8 -5.128 -3.059 5.935 1.00 0.60 ATOM 65 N ASP 9 -6.321 -1.459 7.018 1.00 0.97 ATOM 66 CA ASP 9 -7.487 -2.316 7.112 1.00 0.97 ATOM 67 CB ASP 9 -8.571 -1.608 7.917 1.00 0.97 ATOM 68 CG ASP 9 -8.286 -1.367 9.373 1.00 0.97 ATOM 69 OD1 ASP 9 -7.319 -1.935 9.921 1.00 0.97 ATOM 70 OD2 ASP 9 -9.046 -0.581 9.982 1.00 0.97 ATOM 71 C ASP 9 -8.015 -2.630 5.722 1.00 0.97 ATOM 72 O ASP 9 -8.650 -3.686 5.461 1.00 0.97 ATOM 73 N THR 10 -7.756 -1.706 4.801 1.00 0.49 ATOM 74 CA THR 10 -8.235 -1.881 3.443 1.00 0.49 ATOM 75 CB THR 10 -8.481 -0.515 2.814 1.00 0.49 ATOM 76 OG1 THR 10 -9.095 0.392 3.390 1.00 0.49 ATOM 77 CG2 THR 10 -8.819 -0.717 1.282 1.00 0.49 ATOM 78 C THR 10 -7.203 -2.636 2.622 1.00 0.49 ATOM 79 O THR 10 -7.444 -3.068 1.464 1.00 0.49 ATOM 80 N LYS 11 -6.026 -2.807 3.217 1.00 0.36 ATOM 81 CA LYS 11 -4.951 -3.484 2.519 1.00 0.36 ATOM 82 CB LYS 11 -5.502 -4.723 1.823 1.00 0.36 ATOM 83 CG LYS 11 -5.632 -5.897 2.963 1.00 0.36 ATOM 84 CD LYS 11 -5.486 -7.295 2.406 1.00 0.36 ATOM 85 CE LYS 11 -5.579 -8.336 3.508 1.00 0.36 ATOM 86 NZ LYS 11 -5.290 -9.707 2.987 1.00 0.36 ATOM 87 C LYS 11 -4.337 -2.555 1.483 1.00 0.36 ATOM 88 O LYS 11 -3.950 -2.961 0.356 1.00 0.36 ATOM 89 N THR 12 -4.240 -1.283 1.857 1.00 0.23 ATOM 90 CA THR 12 -3.629 -0.311 0.971 1.00 0.23 ATOM 91 CB THR 12 -4.100 1.087 1.353 1.00 0.23 ATOM 92 OG1 THR 12 -5.711 0.927 0.881 1.00 0.23 ATOM 93 CG2 THR 12 -3.631 2.231 0.407 1.00 0.23 ATOM 94 C THR 12 -2.115 -0.383 1.086 1.00 0.23 ATOM 95 O THR 12 -1.534 -0.775 2.133 1.00 0.23 ATOM 96 N TRP 13 -1.450 0.000 0.000 1.00 0.08 ATOM 97 CA TRP 13 0.000 0.000 0.000 1.00 0.08 ATOM 98 CB TRP 13 0.506 -0.722 -1.244 1.00 0.08 ATOM 99 CG TRP 13 2.332 -0.464 -0.653 1.00 0.08 ATOM 100 CD1 TRP 13 3.061 0.648 -0.932 1.00 0.08 ATOM 101 CD2 TRP 13 3.153 -1.311 0.149 1.00 0.08 ATOM 102 NE1 TRP 13 4.314 0.530 -0.354 1.00 0.08 ATOM 103 CE2 TRP 13 4.397 -0.656 0.309 1.00 0.08 ATOM 104 CE3 TRP 13 2.972 -2.578 0.716 1.00 0.08 ATOM 105 CZ2 TRP 13 5.440 -1.233 1.018 1.00 0.08 ATOM 106 CZ3 TRP 13 4.015 -3.146 1.422 1.00 0.08 ATOM 107 CH2 TRP 13 5.243 -2.468 1.573 1.00 0.08 ATOM 108 C TRP 13 0.520 1.428 0.000 1.00 0.08 ATOM 109 O TRP 13 1.006 1.960 1.021 1.00 0.08 ATOM 110 OXT TRP 13 0.105 1.381 1.892 1.00 0.08 TER END