From caora@plu.edu Thu Sep 13 15:42:13 2018 Return-Path: X-Original-To: models@predictioncenter.org Delivered-To: models@predictioncenter.org Received: from ham-2.plu.edu (ham-2.plu.edu [152.117.1.19]) by predictioncenter5.genomecenter.ucdavis.edu (Postfix) with ESMTP id 3497937C20CD for ; Thu, 13 Sep 2018 15:42:13 -0700 (PDT) Received: from ham-2.plu.edu (localhost [127.0.0.1]) by ham-2.plu.edu (Postfix) with ESMTP id 04D711FEE8 for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) X-Virus-Scanned: amavisd-new at plu.edu Received: from ham-2.plu.edu ([127.0.0.1]) by ham-2.plu.edu (ham-2.plu.edu [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id UyfDBVIhH08z for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) Received: from osiris.localdomain (osiris.cs.plu.edu [152.117.176.10]) by ham-2.plu.edu (Postfix) with ESMTP id D65041FEDA for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) Received: from localhost (localhost [127.0.0.1]) by osiris.localdomain (Postfix) with SMTP id C9E8B1CCAD0360 for ; Thu, 13 Sep 2018 15:42:11 -0700 (PDT) To: models@predictioncenter.org From: caora@plu.edu Reply-to: Cao-server@osiris.localdomain Subject: Cao-server Ab-Initio 3D Prediction for casp2.pdb Message-Id: <20180913224211.C9E8B1CCAD0360@osiris.localdomain> Date: Thu, 13 Sep 2018 15:42:11 -0700 (PDT) PFRMAT TS TARGET TargetName AUTHOR 3616-2337-5414 METHOD Ab initio fragment based protein structure prediction with deep learning and contact prediction. REMARK 1 Frag8_TargetName_96.pdb REMARK 2 model selection based on both single model quality assessment method DeepQA and Qprob. MODEL 2 PARENT N/A ATOM 1 N ALA 1 -10.255 -6.608 -16.388 1.00 0.54 ATOM 2 CA ALA 1 -11.279 -6.568 -15.362 1.00 0.54 ATOM 3 CB ALA 1 -12.245 -7.729 -15.566 1.00 0.54 ATOM 4 C ALA 1 -10.641 -6.680 -13.986 1.00 0.54 ATOM 5 O ALA 1 -11.094 -6.074 -12.979 1.00 0.54 ATOM 6 N PHE 2 -9.569 -7.464 -13.926 1.00 0.70 ATOM 7 CA PHE 2 -8.911 -7.696 -12.654 1.00 0.70 ATOM 8 CB PHE 2 -8.106 -8.988 -12.730 1.00 0.70 ATOM 9 CG PHE 2 -8.822 -10.150 -13.257 1.00 0.70 ATOM 10 CD1 PHE 2 -9.538 -10.972 -12.392 1.00 0.70 ATOM 11 CD2 PHE 2 -8.838 -10.430 -14.624 1.00 0.70 ATOM 12 CE1 PHE 2 -10.267 -12.066 -12.881 1.00 0.70 ATOM 13 CE2 PHE 2 -9.558 -11.513 -15.122 1.00 0.70 ATOM 14 CZ PHE 2 -10.277 -12.335 -14.250 1.00 0.70 ATOM 15 C PHE 2 -7.979 -6.539 -12.332 1.00 0.70 ATOM 16 O PHE 2 -7.357 -6.455 -11.240 1.00 0.70 ATOM 17 N CYS 3 -7.869 -5.623 -13.290 1.00 0.75 ATOM 18 CA CYS 3 -6.950 -4.513 -13.129 1.00 0.75 ATOM 19 CB CYS 3 -6.996 -3.634 -14.374 1.00 0.75 ATOM 20 SG CYS 3 -5.960 -4.473 -15.730 1.00 0.75 ATOM 21 C CYS 3 -7.338 -3.688 -11.914 1.00 0.75 ATOM 22 O CYS 3 -6.484 -3.192 -11.131 1.00 0.75 ATOM 23 N ASP 4 -8.647 -3.527 -11.738 1.00 0.55 ATOM 24 CA ASP 4 -9.139 -2.791 -10.590 1.00 0.55 ATOM 25 CB ASP 4 -10.649 -2.616 -10.712 1.00 0.55 ATOM 26 CG ASP 4 -10.871 -1.086 -11.294 1.00 0.55 ATOM 27 OD1 ASP 4 -9.995 -0.539 -12.003 1.00 0.55 ATOM 28 OD2 ASP 4 -11.935 -0.515 -10.981 1.00 0.55 ATOM 29 C ASP 4 -8.821 -3.548 -9.311 1.00 0.55 ATOM 30 O ASP 4 -8.463 -2.967 -8.252 1.00 0.55 ATOM 31 N GLU 5 -8.949 -4.869 -9.394 1.00 0.07 ATOM 32 CA GLU 5 -8.678 -5.697 -8.235 1.00 0.07 ATOM 33 CB GLU 5 -8.851 -7.165 -8.610 1.00 0.07 ATOM 34 CG GLU 5 -10.357 -7.427 -9.045 1.00 0.07 ATOM 35 CD GLU 5 -10.642 -8.872 -9.470 1.00 0.07 ATOM 36 OE1 GLU 5 -9.702 -9.607 -9.861 1.00 0.07 ATOM 37 OE2 GLU 5 -11.836 -9.262 -9.439 1.00 0.07 ATOM 38 C GLU 5 -7.257 -5.465 -7.750 1.00 0.07 ATOM 39 O GLU 5 -6.959 -5.408 -6.527 1.00 0.07 ATOM 40 N LEU 6 -6.350 -5.325 -8.713 1.00 0.92 ATOM 41 CA LEU 6 -4.960 -5.090 -8.372 1.00 0.92 ATOM 42 CB LEU 6 -4.106 -5.200 -9.630 1.00 0.92 ATOM 43 CG LEU 6 -3.790 -6.615 -10.173 1.00 0.92 ATOM 44 CD1 LEU 6 -2.656 -6.572 -11.208 1.00 0.92 ATOM 45 CD2 LEU 6 -3.387 -7.616 -9.079 1.00 0.92 ATOM 46 C LEU 6 -4.800 -3.703 -7.772 1.00 0.92 ATOM 47 O LEU 6 -4.110 -3.487 -6.741 1.00 0.92 ATOM 48 N MET 7 -5.442 -2.734 -8.418 1.00 0.47 ATOM 49 CA MET 7 -5.333 -1.362 -7.961 1.00 0.47 ATOM 50 CB MET 7 -6.089 -0.448 -8.919 1.00 0.47 ATOM 51 CG MET 7 -5.420 -0.229 -10.201 1.00 0.47 ATOM 52 SD MET 7 -6.367 0.610 -11.463 1.00 0.47 ATOM 53 CE MET 7 -6.182 2.331 -10.923 1.00 0.47 ATOM 54 C MET 7 -5.924 -1.230 -6.567 1.00 0.47 ATOM 55 O MET 7 -5.422 -0.481 -5.687 1.00 0.47 ATOM 56 N LYS 8 -7.010 -1.965 -6.345 1.00 0.92 ATOM 57 CA LYS 8 -7.610 -1.992 -5.025 1.00 0.92 ATOM 58 CB LYS 8 -8.747 -3.007 -5.007 1.00 0.92 ATOM 59 CG LYS 8 -9.992 -2.019 -5.859 1.00 0.92 ATOM 60 CD LYS 8 -11.362 -2.606 -5.642 1.00 0.92 ATOM 61 CE LYS 8 -12.451 -2.027 -6.535 1.00 0.92 ATOM 62 NZ LYS 8 -13.344 -3.115 -7.043 1.00 0.92 ATOM 63 C LYS 8 -6.568 -2.384 -3.989 1.00 0.92 ATOM 64 O LYS 8 -6.358 -1.703 -2.950 1.00 0.92 ATOM 65 N ASP 9 -5.896 -3.498 -4.262 1.00 0.25 ATOM 66 CA ASP 9 -4.834 -3.939 -3.378 1.00 0.25 ATOM 67 CB ASP 9 -4.306 -5.287 -3.855 1.00 0.25 ATOM 68 CG ASP 9 -5.081 -6.427 -3.711 1.00 0.25 ATOM 69 OD1 ASP 9 -6.133 -6.407 -3.073 1.00 0.25 ATOM 70 OD2 ASP 9 -4.620 -7.465 -4.362 1.00 0.25 ATOM 71 C ASP 9 -3.702 -2.925 -3.379 1.00 0.25 ATOM 72 O ASP 9 -3.086 -2.597 -2.330 1.00 0.25 ATOM 73 N THR 10 -3.410 -2.410 -4.570 1.00 0.02 ATOM 74 CA THR 10 -2.424 -1.352 -4.680 1.00 0.02 ATOM 75 CB THR 10 -2.404 -0.827 -6.111 1.00 0.02 ATOM 76 OG1 THR 10 -2.126 -1.701 -7.060 1.00 0.02 ATOM 77 CG2 THR 10 -1.282 0.312 -6.135 1.00 0.02 ATOM 78 C THR 10 -2.771 -0.217 -3.731 1.00 0.02 ATOM 79 O THR 10 -1.898 0.552 -3.247 1.00 0.02 ATOM 80 N LYS 11 -4.066 -0.095 -3.450 1.00 0.88 ATOM 81 CA LYS 11 -4.532 1.020 -2.649 1.00 0.88 ATOM 82 CB LYS 11 -6.003 1.281 -2.952 1.00 0.88 ATOM 83 CG LYS 11 -6.497 2.574 -1.994 1.00 0.88 ATOM 84 CD LYS 11 -7.988 2.693 -1.846 1.00 0.88 ATOM 85 CE LYS 11 -8.367 3.285 -0.505 1.00 0.88 ATOM 86 NZ LYS 11 -9.510 2.614 0.130 1.00 0.88 ATOM 87 C LYS 11 -4.371 0.702 -1.171 1.00 0.88 ATOM 88 O LYS 11 -4.571 1.558 -0.269 1.00 0.88 ATOM 89 N THR 12 -4.003 -0.547 -0.902 1.00 0.95 ATOM 90 CA THR 12 -3.628 -0.918 0.449 1.00 0.95 ATOM 91 CB THR 12 -4.240 -2.272 0.790 1.00 0.95 ATOM 92 OG1 THR 12 -4.934 -2.930 0.371 1.00 0.95 ATOM 93 CG2 THR 12 -3.333 -2.845 2.083 1.00 0.95 ATOM 94 C THR 12 -2.115 -1.004 0.564 1.00 0.95 ATOM 95 O THR 12 -1.534 -1.957 1.149 1.00 0.95 ATOM 96 N TRP 13 -1.450 0.000 0.000 1.00 0.51 ATOM 97 CA TRP 13 0.000 0.000 0.000 1.00 0.51 ATOM 98 CB TRP 13 0.506 -0.722 -1.244 1.00 0.51 ATOM 99 CG TRP 13 2.294 0.214 -1.093 1.00 0.51 ATOM 100 CD1 TRP 13 3.291 -0.479 -0.469 1.00 0.51 ATOM 101 CD2 TRP 13 2.909 1.430 -1.593 1.00 0.51 ATOM 102 NE1 TRP 13 4.477 0.214 -0.543 1.00 0.51 ATOM 103 CE2 TRP 13 4.265 1.394 -1.227 1.00 0.51 ATOM 104 CE3 TRP 13 2.448 2.551 -2.293 1.00 0.51 ATOM 105 CZ2 TRP 13 5.158 2.420 -1.545 1.00 0.51 ATOM 106 CZ3 TRP 13 3.320 3.584 -2.629 1.00 0.51 ATOM 107 CH2 TRP 13 4.688 3.515 -2.243 1.00 0.51 ATOM 108 C TRP 13 0.520 1.428 0.000 1.00 0.51 ATOM 109 O TRP 13 0.841 2.020 -1.052 1.00 0.51 ATOM 110 OXT TRP 13 -0.946 2.270 -0.152 1.00 0.51 TER END