From caora@plu.edu Thu Sep 13 15:42:16 2018 Return-Path: X-Original-To: models@predictioncenter.org Delivered-To: models@predictioncenter.org Received: from ham-2.plu.edu (ham-2.plu.edu [152.117.1.19]) by predictioncenter5.genomecenter.ucdavis.edu (Postfix) with ESMTP id 448FB37C20CD for ; Thu, 13 Sep 2018 15:42:16 -0700 (PDT) Received: from ham-2.plu.edu (localhost [127.0.0.1]) by ham-2.plu.edu (Postfix) with ESMTP id 430401FF02 for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) X-Virus-Scanned: amavisd-new at plu.edu Received: from ham-2.plu.edu ([127.0.0.1]) by ham-2.plu.edu (ham-2.plu.edu [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id CloYsMBTyXSG for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) Received: from osiris.localdomain (osiris.cs.plu.edu [152.117.176.10]) by ham-2.plu.edu (Postfix) with ESMTP id 236B01FEF5 for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) Received: from localhost (localhost [127.0.0.1]) by osiris.localdomain (Postfix) with SMTP id 16E0F1CCAD0360 for ; Thu, 13 Sep 2018 15:42:12 -0700 (PDT) To: models@predictioncenter.org From: caora@plu.edu Reply-to: Cao-server@osiris.localdomain Subject: Cao-server Ab-Initio 3D Prediction for casp5.pdb Message-Id: <20180913224212.16E0F1CCAD0360@osiris.localdomain> Date: Thu, 13 Sep 2018 15:42:12 -0700 (PDT) PFRMAT TS TARGET TargetName AUTHOR 3616-2337-5414 METHOD Ab initio fragment based protein structure prediction with deep learning and contact prediction. REMARK 1 Frag8_TargetName_40.pdb REMARK 2 model selection based on both single model quality assessment method DeepQA and Qprob. MODEL 5 PARENT N/A ATOM 1 N ALA 1 -2.427 0.137 -16.564 1.00 0.31 ATOM 2 CA ALA 1 -2.806 -1.257 -16.682 1.00 0.31 ATOM 3 CB ALA 1 -2.144 -2.057 -15.566 1.00 0.31 ATOM 4 C ALA 1 -4.316 -1.396 -16.576 1.00 0.31 ATOM 5 O ALA 1 -4.879 -2.499 -16.346 1.00 0.31 ATOM 6 N PHE 2 -4.998 -0.267 -16.744 1.00 0.98 ATOM 7 CA PHE 2 -6.446 -0.280 -16.688 1.00 0.98 ATOM 8 CB PHE 2 -6.969 -1.514 -17.414 1.00 0.98 ATOM 9 CG PHE 2 -8.262 0.944 -17.941 1.00 0.98 ATOM 10 CD1 PHE 2 -9.470 0.733 -17.289 1.00 0.98 ATOM 11 CD2 PHE 2 -8.008 2.190 -18.491 1.00 0.98 ATOM 12 CE1 PHE 2 -10.401 1.748 -17.182 1.00 0.98 ATOM 13 CE2 PHE 2 -8.936 3.222 -18.391 1.00 0.98 ATOM 14 CZ PHE 2 -10.132 3.002 -17.734 1.00 0.98 ATOM 15 C PHE 2 -6.911 -0.312 -15.241 1.00 0.98 ATOM 16 O PHE 2 -6.543 0.544 -14.393 1.00 0.98 ATOM 17 N CYS 3 -7.735 -1.311 -14.937 1.00 0.40 ATOM 18 CA CYS 3 -8.226 -1.458 -13.581 1.00 0.40 ATOM 19 CB CYS 3 -9.275 -2.563 -13.541 1.00 0.40 ATOM 20 SG CYS 3 -10.874 -1.422 -14.592 1.00 0.40 ATOM 21 C CYS 3 -7.079 -1.817 -12.649 1.00 0.40 ATOM 22 O CYS 3 -7.079 -1.512 -11.427 1.00 0.40 ATOM 23 N ASP 4 -6.076 -2.478 -13.221 1.00 0.41 ATOM 24 CA ASP 4 -4.941 -2.903 -12.425 1.00 0.41 ATOM 25 CB ASP 4 -3.977 -3.693 -13.302 1.00 0.41 ATOM 26 CG ASP 4 -4.588 -5.161 -13.545 1.00 0.41 ATOM 27 OD1 ASP 4 -5.563 -5.563 -12.873 1.00 0.41 ATOM 28 OD2 ASP 4 -4.038 -5.855 -14.428 1.00 0.41 ATOM 29 C ASP 4 -4.225 -1.691 -11.853 1.00 0.41 ATOM 30 O ASP 4 -3.817 -1.645 -10.662 1.00 0.41 ATOM 31 N GLU 5 -4.059 -0.682 -12.704 1.00 0.66 ATOM 32 CA GLU 5 -3.356 0.514 -12.282 1.00 0.66 ATOM 33 CB GLU 5 -3.007 1.353 -13.506 1.00 0.66 ATOM 34 CG GLU 5 -1.669 0.811 -14.140 1.00 0.66 ATOM 35 CD GLU 5 -1.308 1.638 -15.357 1.00 0.66 ATOM 36 OE1 GLU 5 -2.202 1.879 -16.196 1.00 0.66 ATOM 37 OE2 GLU 5 -0.123 2.033 -15.485 1.00 0.66 ATOM 38 C GLU 5 -4.233 1.330 -11.345 1.00 0.66 ATOM 39 O GLU 5 -3.766 1.962 -10.361 1.00 0.66 ATOM 40 N LEU 6 -5.529 1.326 -11.643 1.00 0.31 ATOM 41 CA LEU 6 -6.462 2.083 -10.831 1.00 0.31 ATOM 42 CB LEU 6 -7.832 2.079 -11.498 1.00 0.31 ATOM 43 CG LEU 6 -7.900 3.152 -12.742 1.00 0.31 ATOM 44 CD1 LEU 6 -9.268 3.043 -13.397 1.00 0.31 ATOM 45 CD2 LEU 6 -7.622 4.569 -12.260 1.00 0.31 ATOM 46 C LEU 6 -6.572 1.459 -9.449 1.00 0.31 ATOM 47 O LEU 6 -6.754 2.146 -8.409 1.00 0.31 ATOM 48 N MET 7 -6.463 0.134 -9.419 1.00 0.98 ATOM 49 CA MET 7 -6.537 -0.572 -8.155 1.00 0.98 ATOM 50 CB MET 7 -6.527 -2.074 -8.413 1.00 0.98 ATOM 51 CG MET 7 -7.866 -2.546 -8.957 1.00 0.98 ATOM 52 SD MET 7 -7.910 -4.235 -9.540 1.00 0.98 ATOM 53 CE MET 7 -8.085 -5.122 -7.969 1.00 0.98 ATOM 54 C MET 7 -5.348 -0.203 -7.283 1.00 0.98 ATOM 55 O MET 7 -5.459 0.027 -6.049 1.00 0.98 ATOM 56 N LYS 8 -4.182 -0.140 -7.920 1.00 0.31 ATOM 57 CA LYS 8 -2.976 0.199 -7.191 1.00 0.31 ATOM 58 CB LYS 8 -1.814 0.331 -8.169 1.00 0.31 ATOM 59 CG LYS 8 -1.442 -1.345 -8.470 1.00 0.31 ATOM 60 CD LYS 8 -0.080 -1.476 -9.099 1.00 0.31 ATOM 61 CE LYS 8 0.235 -2.862 -9.648 1.00 0.31 ATOM 62 NZ LYS 8 0.918 -2.755 -10.975 1.00 0.31 ATOM 63 C LYS 8 -3.165 1.515 -6.454 1.00 0.31 ATOM 64 O LYS 8 -2.785 1.687 -5.266 1.00 0.31 ATOM 65 N ASP 9 -3.764 2.472 -7.158 1.00 0.86 ATOM 66 CA ASP 9 -4.042 3.757 -6.546 1.00 0.86 ATOM 67 CB ASP 9 -4.612 4.704 -7.595 1.00 0.86 ATOM 68 CG ASP 9 -3.832 5.216 -8.634 1.00 0.86 ATOM 69 OD1 ASP 9 -2.600 5.227 -8.450 1.00 0.86 ATOM 70 OD2 ASP 9 -4.353 5.601 -9.695 1.00 0.86 ATOM 71 C ASP 9 -5.049 3.588 -5.419 1.00 0.86 ATOM 72 O ASP 9 -5.097 4.368 -4.432 1.00 0.86 ATOM 73 N THR 10 -5.876 2.554 -5.555 1.00 0.18 ATOM 74 CA THR 10 -6.898 2.309 -4.557 1.00 0.18 ATOM 75 CB THR 10 -8.094 1.630 -5.215 1.00 0.18 ATOM 76 OG1 THR 10 -8.706 2.110 -6.144 1.00 0.18 ATOM 77 CG2 THR 10 -9.026 1.090 -3.974 1.00 0.18 ATOM 78 C THR 10 -6.349 1.411 -3.460 1.00 0.18 ATOM 79 O THR 10 -6.977 1.187 -2.391 1.00 0.18 ATOM 80 N LYS 11 -5.157 0.879 -3.713 1.00 0.44 ATOM 81 CA LYS 11 -4.546 -0.021 -2.754 1.00 0.44 ATOM 82 CB LYS 11 -3.272 -0.608 -3.352 1.00 0.44 ATOM 83 CG LYS 11 -4.049 -1.882 -4.412 1.00 0.44 ATOM 84 CD LYS 11 -2.916 -2.800 -4.901 1.00 0.44 ATOM 85 CE LYS 11 -3.391 -3.646 -6.069 1.00 0.44 ATOM 86 NZ LYS 11 -2.304 -4.607 -6.479 1.00 0.44 ATOM 87 C LYS 11 -4.204 0.733 -1.479 1.00 0.44 ATOM 88 O LYS 11 -4.120 1.989 -1.437 1.00 0.44 ATOM 89 N THR 12 -4.000 -0.033 -0.411 1.00 0.10 ATOM 90 CA THR 12 -3.626 0.570 0.853 1.00 0.10 ATOM 91 CB THR 12 -4.272 -0.207 1.995 1.00 0.10 ATOM 92 OG1 THR 12 -3.698 -1.437 2.225 1.00 0.10 ATOM 93 CG2 THR 12 -5.706 -0.205 2.040 1.00 0.10 ATOM 94 C THR 12 -2.115 0.543 1.016 1.00 0.10 ATOM 95 O THR 12 -1.536 0.999 2.037 1.00 0.10 ATOM 96 N TRP 13 -1.450 0.000 0.000 1.00 0.96 ATOM 97 CA TRP 13 0.000 0.000 0.000 1.00 0.96 ATOM 98 CB TRP 13 0.506 -0.722 -1.244 1.00 0.96 ATOM 99 CG TRP 13 0.723 -2.361 -0.452 1.00 0.96 ATOM 100 CD1 TRP 13 -0.287 -3.100 0.087 1.00 0.96 ATOM 101 CD2 TRP 13 1.923 -3.147 -0.333 1.00 0.96 ATOM 102 NE1 TRP 13 0.201 -4.294 0.545 1.00 0.96 ATOM 103 CE2 TRP 13 1.563 -4.362 0.285 1.00 0.96 ATOM 104 CE3 TRP 13 3.273 -2.953 -0.628 1.00 0.96 ATOM 105 CZ2 TRP 13 2.513 -5.362 0.593 1.00 0.96 ATOM 106 CZ3 TRP 13 4.206 -3.920 -0.326 1.00 0.96 ATOM 107 CH2 TRP 13 3.830 -5.145 0.269 1.00 0.96 ATOM 108 C TRP 13 0.520 1.428 0.000 1.00 0.96 ATOM 109 O TRP 13 1.688 1.712 0.341 1.00 0.96 ATOM 110 OXT TRP 13 1.720 1.712 0.308 1.00 0.96 TER END