NOW ONLINE: free TBM assessment software from Richardson Lab

NOW ONLINE: free TBM assessment software from Richardson Lab

Postby DanielKeedy on Mon Sep 20, 2010 11:48 am

Hi everybody! This is Daniel Keedy from Dave and Jane Richardson's lab at Duke. We were in charge of TBM/HA assessment for CASP8. This post is intended to let everybody know that the all-atom, full-model scores we implemented and utilized are now freely available on our website as the BACPAC software suite:

http://kinemage.biochem.duke.edu/software/bacpac.php

These tools score the following criteria: MolProbity quality, mainchain "reality", rotamer correctness, mainchain H-bond correctness, sidechain H-bond correctness, and sidechain positioning. More detailed information as well as a link to our paper can be found here:

http://kinemage.biochem.duke.edu/suppin ... /index.php

We encourage the CASP9 assessors to use all six metrics for a well-rounded perspective on all-atom quality as well as Calpha correctness. We also encourage predictors to use the two model-only metrics (MPscore and MCRS) to evaluate the quality of their own predictions, whether retrospectively for CASP9 or proactively in CASP10. Thanks!

Daniel Keedy
daniel.keedy@duke.edu
http://kinemage.biochem.duke.edu
DanielKeedy
 
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Re: NOW ONLINE: free TBM assessment software from Richardson Lab

Postby tevang on Sat Sep 25, 2010 5:33 am

Will mainchain reality score be implemented by Molprobity server soon?
tevang
 
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Re: NOW ONLINE: free TBM assessment software from Richardson Lab

Postby DanielKeedy on Mon Sep 27, 2010 5:55 am

tevang wrote:Will mainchain reality score be implemented by Molprobity server soon?

Sorry, probably not. However, it is implemented in the BACPAC software described above.
DanielKeedy
 
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