 
PFRMAT AL 
TARGET T0069 
AUTHOR 8120-3487-1357 
REMARK Matrix Used: 1rdo BS_90_25 
REMARK Matrix Used: 1afa BS_30_25  
REMARK Alignment Method Used: Quasi-Global Dynamic Programming 
METHOD Sequence-Structure alignment based on the environments 
METHOD published in: Deerfield, Holland-Minkley, Geigel, and  
METHOD Nicholas 1997. "Classification of the Environment of  
METHOD Protein Residues" J. Prot. Chem. 16:441-446. 
METHOD  
METHOD This test uses our latest (unpublished) environment  
METHOD classifications and extentions. 
MODEL  1 
PARENT 1rdo_2 
K   42 K  115 
I   43 Y  116 
F   44 F  117 
K   45 M  118 
T   46 S  119 
A   47 S  120 
G   48 V  121 
A   49 R  122 
V   50 R  123 
K   51 M  124 
S   52 P  125 
Y   53 L  126 
S   54 N  127 
D   55 R  128 
A   56 A  129 
E   57 K  130 
Q   58 A  131 
L   59 L  132 
C   60 C  133 
R   61 S  134 
E   62 E  135 
A   63 L  136 
K   64 Q  137 
G   65 G  138 
Q   66 T  139 
L   67 V  140 
A   68 A  141 
S   69 T  142 
P   70 P  143 
R   71 R  144 
S   72 N  145 
S   73 A  146 
A   74 E  147 
E   75 E  148 
N   76 N  149 
E   77 R  150 
A   78 A  151 
V   79 I  152 
T   80 Q  153 
Q   81 N  154 
M   82 V  155 
V   83 A  156 
R   84 K  157 
A   85 D  158 
N   89 V  159 
A   90 A  160 
Y   91 F  161 
L   92 L  162 
S   93 G  163 
M   94 I  164 
N   95 T  165 
D   96 D  166 
I   97 Q  167 
S   98 R  168 
T   99 T  169 
E  100 E  170 
G  101 N  171 
R  102 V  172 
F  103 F  173 
T  104 E  174 
Y  105 D  175 
P  106 L  176 
T  107 T  177 
G  108 G  178 
E  109 N  179 
I  110 R  180 
L  111 V  181 
V  112 R  182 
Y  113 Y  183 
S  114 T  184 
N  115 N  185 
W  116 W  186 
A  117 N  187 
D  118 E  188 
G  119 G  189 
N  122 E  190 
N  123 P  191 
S  124 N  192 
D  125 N  193 
E  126 V  194 
G  127 G  195 
Q  128 S  196 
P  129 G  197 
E  130 E  198 
N  131 N  199 
C  132 C  200 
V  133 V  201 
E  134 V  202 
I  135 L  203 
F  136 L  204 
P  137 T  205 
D  138 N  206 
G  139 G  207 
K  140 K  208 
W  141 W  209 
N  142 N  210 
D  143 D  211 
V  144 V  212 
P  145 P  213 
C  146 C  214 
S  147 S  215 
K  148 D  216 
Q  149 S  217 
L  150 F  218 
L  151 L  219 
V  152 V  220 
I  153 V  221 
C  154 C  222 
E  155 E  223 
F  156 F  224 
TER 
END 
