 
PFRMAT  AL 
TARGET  T0062 
AUTHOR  3873-9906-1225 
REMARK 
REMARK =================================================== 
REMARK Fold recognition results for T0062 
REMARK Authors are: 
REMARK ------------ 
REMARK Paul A Bates (1), 
REMARK Lawrence Kelley (1), Gidon Moont (1) 
REMARK Bob MacCallum (1), Marcel Turcotte (1) 
REMARK Mansoor Saqi (2).& Michael J E Sternberg. 
REMARK m.sternberg@icrf.icnet.uk 
REMARK Biomolecular Modelling Laboratory 
REMARK Imperial Cancer Research Fund 
REMARK Lincoln Inn Fields, London, WC2A 3PX, UK 
REMARK E-mail p.bates@icrf.icnet.uk 
REMARK E-mail m.sternberg@icrf.icnet.uk 
REMARK ------------------------------------------------- 
METHOD Our standard protocol for fold recognition 
METHOD see e.g. t0059 suggested an homology 
METHOD with the pig cytochrome b5 reductase (pdb 1ndh) 
METHOD and with a low id with feeredoxin NADP+ reductase family 
METHOD (pdb code 1fnd).  Both alignments were generated 
METHOD by inspection. 
METHOD A major difference between the two structures 
METHOD is the additional presence of a beta hairpin 
METHOD in 1ndh at the start of the 2nd domain. 
METHOD This hairin changes shifts the position of two 
METHOD two domains (see Nishid et al, 
METHOD Biochem 1995, v 34, pp 2763-67). 
METHOD Sequence alignment suggested that the target 
METHOD t0062 lacks this hairpin. 
METHOD We therefore submit two fragments from the same 
METHOD parent to refplect there is a shift of 
METHOD coords from the modelling both domains 
METHOD on a  single temple. 
MODEL 1 
PARENT 1ndh 
R  103 K 144 
P  104 S 145 
M  105 V 146 
I  106 G 147 
L  107 M 148 
I  108 I 149 
A  109 A 150 
G  110 G 151 
G  111 G 152 
T  112 T 153 
G  113 G 154 
Y  116 P 157 
A  117 M 158 
R  118 L 159 
S  119 Q 160 
I  120 V 161 
L  121 I 162 
L  122 R 163 
T  123 A 164 
A  124 I 165 
L  125 M 166 
A  126 K 167 
P  129 D 171 
N  130 H 172 
R  131 T 173 
D  132 V 174 
I  133 C 175 
T  134 H 176 
I  135 L 177 
Y  136 L 178 
W  137 F 179 
G  138 A 180 
G  139 N 181 
R  140 Q 182 
E  141 T 183 
E  142 E 184 
Q  143 K 185 
H  144 D 186 
L  145 I 187 
Y  146 L 188 
D  147 L 189 
L  148 R 190 
C  149 P 191 
E  150 E 192 
L  151 L 193 
E  152 E 194 
A  153 E 195 
L  154 L 196 
S  155 R 197 
L  156 N 198 
K  157 E 199 
L  161 F 204 
Q  162 K 205 
V  163 L 206 
V  164 W 207 
P  165 Y 208 
V  166 T 209 
V  167 V 210 
E  168 D 211 
Q  169 R 212 
P  170 A 213 
E  171 P 214 
A  172 E 215 
G  173 A 216 
W  174 W 217 
R  175 D 218 
G  176 Y 219 
R  177 S 220 
T  178 Q 221 
G  179 G 222 
T  180 F 223 
V  181 V 224 
L  182 N 225 
T  183 E 226 
A  184 E 227 
V  185 M 228 
L  186 I 229 
Q  187 R 230 
D  188 D 231 
H  189 H 232 
G  190 L 233 
T  191 P 234 
L  192 P 235 
D  196 L 241 
I  197 V 242 
Y  198 L 243 
I  199 M 244 
A  200 C 245 
G  201 G 246 
R  202 P 247 
F  203 P 248 
E  204 P 249 
M  205 M 250 
A  206 I 251 
K  207 Q 252 
I  208 Y 253 
A  209 A 254 
D  227 R 268 
A  228 C 269 
F  229 F 270 
A  230 A 271 
F  231 F 272 
TER 
END 
