PFRMAT AL 
TARGET T0051 
AUTHOR 7397-8542-2481 
METHOD No significant similarity to other protein families was detected by 
METHOD PSI-BLAST searches.  The secondary structure prediction posted on the  
METHOD JPRED server was therefore used in a MAP search.  The top hits were 
METHOD alpha/beta proteins and the size of the GlmE protein suggested that 
METHOD the best template would be a TIM barrel.  Using this template leaves 
METHOD a large N-terminal domain unassigned.  This domain is predicted to be 
METHOD all helical.  The match between GlmE and the template was made by  
METHOD maximum overlap of secondary structure segments. 
MODEL  1 
PARENT 1btm_A 
V 245    R   1 
K 246    K   2 
N 247    P   3 
I 248    I   4 
T 249    I   5 
V 250    A   6 
G 251    G   7 
Y 252    N   8 
G 253    W   9 
D 261    L  15 
I 262    A  16 
A 263    E  17 
A 264    A  18 
L 265    V  19 
R 266    Q  20 
C 267    F  21 
L 268    V  22 
E 269    E  23 
E 270    D  24 
Q 271    V  25 
T 272    K  26 
N 273    G  27 
E 274    H  28 
Y 275    V  29 
D 283    I  36 
V 284    S  37 
F 285    V  38 
V 286    V  39 
T 287    C  40 
T 288    A  41 
V 289    P  42 
F 290    F  43 
H 291    L  44 
Q 292    F  45 
W 293    L  46 
M 294    D  47 
G 295    R  48 
G 296    L  49 
F 297    V  50 
P 298    Q  51 
Q 299    A  52 
D 300    A  53 
E 301    D  54 
S 302    G  55 
K 303    T  56 
A 304    D  57 
F 305    L  58 
G 306    K  59 
V 307    I  60 
I 308    G  61 
V 309    A  62 
T 310    Q  63 
A 311    T  64 
I 314    M  81 
A 315    L  82 
A 316    K  83 
L 317    D  84 
A 318    L  85 
G 319    G  86 
A 320    V  87 
T 321    T  88 
K 322    Y  89 
V 323    V  90 
I 324    I  91 
V 325    L  92 
T 336    D 105 
K 337    E 106 
E 338    T 107 
A 339    V 108 
N 340    N 109 
A 341    K 110 
A 342    K 111 
G 343    V 112 
I 344    L 113 
K 345    A 114 
A 346    A 115 
T 347    F 116 
K 348    T 117 
M 349    R 118 
L 351    I 121 
N 352    P 122 
M 353    I 123 
L 354    I 124 
E 355    C 125 
G 356    C 126 
Q 357    G 127 
E 368    T 138 
M 369    N 139 
A 370    A 140 
V 371    V 141 
I 372    V 142 
K 373    A 143 
A 374    S 144 
E 375    Q 145 
T 376    V 146 
K 377    E 147 
C 378    K 148 
I 379    A 149 
L 380    L 150 
D 381    A 151 
K 382    G 152 
M 383    L 153 
F 384    T 154 
E 385    P 155 
L 386    E 156 
G 387    Q 157 
K 388    V 158 
G 389    K 159 
D 390    Q 160 
L 391    A 161 
A 392    V 162 
I 393    I 163 
G 394    A 164 
T 395    Y 165 
V 428    I 207 
R 429    Q 208 
Y 430    Y 209 
M 465    P 230 
V 466    L 231 
I 467    V 232 
TER 
END 
