PFRMAT AL 
TARGET T0045 
AUTHOR 6795-8227-6214 
REMARK CASP3 Prediction by Michael Bass on 8/14/98 
METHOD AmgenThread.  Gapped alignments with no end penalties. 
METHOD Uses residue-based statistical potentials.  Specific 
METHOD potentials include exposed surface area, inter-residue 
METHOD distance-dependent contacts, and backbone dihedral 
METHOD angle preferences.  The search database is against the 
METHOD Hobohm PDB-SELECT list, Oct 97, at the 45% identity or 
METHOD less level containing 1,247 structures. 
METHOD This is an automatic prediction method. 
REMARK Results from database search: 
REMARK Sequence "t0045" has a significant match 
REMARK pdb1ofv       5.471     0.230    -0.301  FLAVODOXIN (OXIDIZED FORM) 
REMARK                                          SCOP: A/B; Flavodoxin-like 
REMARK pdb1rro       5.192     0.221    21.832  RAT ONCOMODULIN 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1maz       4.895     0.211     1.451  MOLECULE: BCL-XL; 
REMARK                                          SCOP: Membrane; Toxins' membrane translocation domains 
REMARK pdb2hbg       4.661     0.203    15.752  HEMOGLOBIN (DEOXY) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1aep       4.102     0.184    12.434  APOLIPOPHORIN III 
REMARK                                          SCOP: Alpha; Apolipophorin-III 
REMARK pdb1cpq       4.094     0.184     6.657  MOLECULE: CYTOCHROME C'; 
REMARK                                          SCOP: Alpha; Four-helical up-and-down bundle 
REMARK pdb5pal       3.905     0.177    10.295  PARVALBUMIN (ALPHA LINEAGE) 
REMARK                                          SCOP: Alpha; EF-hand 
REMARK pdb1aba       3.839     0.175    13.593  GLUTAREDOXIN MUTANT WITH VAL 15 REPLACED BY GLY AND TYR 16 
REMARK                                          SCOP: A/B; Thioredoxin-like 
REMARK pdb1myt       3.622     0.168     9.689  MYOGLOBIN (MET) 
REMARK                                          SCOP: Alpha; Globin-like 
REMARK pdb1aya_A     3.558     0.166     0.584  TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) 
REMARK                                          SCOP: A+B; SH2-like 
MODEL  1 
REMARK Sequence alignment follows: 
REMARK t0045        MTPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTL.. 
REMARK                            ||| :: ||.  :.: .||:|:|| ::  .|..|   
REMARK pdb1ofv      ............AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIAN 
REMARK  
REMARK t0045        LVAENGDQKKLACFVL.......ATANMLNLKKAAKSI...GVKKVEMA. 
REMARK              . :|  .:.| :|||.       :  .| .:.|.|.::   | |#|#||  
REMARK pdb1ofv      ADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVNFQGKKVAYFGA 
REMARK  
REMARK t0045        .DKDAAQKSTGYLVGGISPLGQKKRVKTV..IKSTALEFETI.YVSGGK. 
REMARK               | |:.::     :  |. : :: . .:|  |:.  |.||..  |||:.  
REMARK pdb1ofv      GDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAVRNNQF 
REMARK  
REMARK t0045        RGLSV..EIAPQDLAKVLGAEFTDIVDE... 
REMARK               || :  :# :.|  |.| :#| :| .|    
REMARK pdb1ofv      VGLAIDEDNQPDLTKNRIKTWVSQLKSEFGL 
REMARK  
PARENT 1ofv 
I 13  A 1 
P 14  K 2 
F 15  I 3 
I 16  G 4 
L 17  L 5 
H 18  F 6 
T 19  Y 7 
Y 20  G 8 
D 21  T 9 
H 22  Q 10 
D 23  T 11 
P 24  G 12 
N 25  V 13 
N 26  T 14 
Q 27  Q 15 
H 28  T 16 
F 29  I 17 
G 30  A 18 
D 31  E 19 
E 32  S 20 
A 33  I 21 
A 34  Q 22 
E 35  Q 23 
K 36  E 24 
L 37  F 25 
G 38  G 26 
I 39  G 27 
D 40  E 28 
P 41  S 29 
N 42  I 30 
R 43  V 31 
S 44  D 32 
F 45  L 33 
K 46  N 34 
T 47  D 35 
L 48  I 36 
L 49  A 39 
V 50  D 40 
A 51  A 41 
E 52  S 42 
N 53  D 43 
G 54  L 44 
D 55  N 45 
Q 56  A 46 
K 57  Y 47 
K 58  D 48 
L 59  Y 49 
A 60  L 50 
C 61  I 51 
F 62  I 52 
V 63  G 53 
L 64  C 54 
A 65  L 62 
T 66  Q 63 
A 67  S 64 
N 68  D 65 
M 69  W 66 
L 70  E 67 
N 71  G 68 
L 72  I 69 
K 73  Y 70 
K 74  D 71 
A 75  D 72 
A 76  L 73 
K 77  D 74 
S 78  S 75 
I 79  V 76 
G 80  G 80 
V 81  K 81 
K 82  K 82 
K 83  V 83 
V 84  A 84 
E 85  Y 85 
M 86  F 86 
A 87  G 87 
D 88  D 90 
K 89  Q 91 
D 90  V 92 
A 91  G 93 
A 92  Y 94 
Q 93  S 95 
K 94  D 96 
S 95  N 97 
T 96  F 98 
G 97  Q 99 
Y 98  D 100 
L 99  A 101 
V 100  M 102 
G 101  G 103 
G 102  I 104 
I 103  L 105 
S 104  E 106 
P 105  E 107 
L 106  K 108 
G 107  I 109 
Q 108  S 110 
K 109  S 111 
K 110  L 112 
R 111  G 113 
V 112  S 114 
K 113  Q 115 
T 114  T 116 
V 115  V 117 
I 116  W 120 
K 117  P 121 
S 118  I 122 
T 119  E 123 
A 120  G 124 
L 121  Y 125 
E 122  D 126 
F 123  F 127 
E 124  N 128 
T 125  E 129 
I 126  S 130 
Y 127  A 132 
V 128  V 133 
S 129  R 134 
G 130  N 135 
G 131  N 136 
K 132  Q 137 
R 133  V 139 
G 134  G 140 
L 135  L 141 
S 136  A 142 
V 137  I 143 
E 138  D 146 
I 139  N 147 
A 140  Q 148 
P 141  P 149 
Q 142  D 150 
D 143  L 151 
L 144  T 152 
A 145  K 153 
K 146  N 154 
V 147  R 155 
L 148  I 156 
G 149  K 157 
A 150  T 158 
E 151  W 159 
F 152  V 160 
T 153  S 161 
D 154  Q 162 
I 155  L 163 
V 156  K 164 
D 157  S 165 
E 158  E 166 
TER 
END 
