 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0002.inter 
CONANA-LIGAND          ../CONANA/T0002.ligand 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp2.T0002.1wsy_B.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 3589 atoms, MODEL 3403 atoms, 3121 common with TARGET 
           Number of atoms possible to evaluate: 1011 
 
 
 CA-RMS TARGET<->PARENT(1wsy_B)	 2.508811 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    88.96           39.6   412    42.0   981     ARMSMC  
     WELL ORDERED  . . . . .    88.87           38.8   356    48.8   729     ARMSMC  
     NO INTER CONTACTS . . .    89.73           40.2   351    43.0   816     ARMSMC  
     SHIFTED CHAIN . . . . .    89.97           37.8   357    40.1   891     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    90.18           43.1   232    46.7   497     ARMSMC  
     LARGE SHIFTS/INSERTIONS    85.87           40.5   173    30.5   567     ARMSMC  
     LIGAND CONTACTS . . . .    87.00           40.0    10   100.0    10     ARMSMC  
     SURFACE . . . . . . . .    85.53           43.9   189    38.3   493     ARMSMC  
     BURIED  . . . . . . . .    91.76           35.9   223    45.7   488     ARMSMC  
     CORE  . . . . . . . . .    91.12           38.9   239    57.7   414     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   339     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   230     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   271     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   303     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0   271     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   306     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   187     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0   193     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   174     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   165     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   146     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   262     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   179     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   208     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   186     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0   232     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   243     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   145     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0   155     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   150     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   107     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    93     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    49     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    70     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    86     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    89     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    56     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    52     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    65     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    41     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    32     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    17     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.21023     r(1,2) =   0.95204     r(1,3) =   0.22231 
 r(2,1) =  -0.69088     r(2,2) =  -0.01622     r(2,3) =   0.72278 
 r(3,1) =   0.69172     r(3,2) =  -0.30554     r(3,3) =   0.65434 
THE OFFSET VECTOR: 
 v(1) = -37.43924     v(2) =  47.48488     v(3) =  25.45794 
 
 Number of iteration 26                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.88           (Number of atoms:    9) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   22.09        209    42.4   493     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1057                            CRMSCA  
     WELL ORDERED  . . . . .   22.14        185    48.4   382     CRMSCA  
     NO INTER CONTACTS . . .   21.79        178    43.4   410     CRMSCA  
     SHIFTED CHAIN . . . . .   22.87        181    40.4   448     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .   22.66        118    47.4   249     CRMSCA  
     SHIFTED SS UNITS  . . .    0.00          0     0.0     0     CRMSCA  
     LARGE SHIFTS/INSERTIONS   23.74         88    30.8   286     CRMSCA  
     LIGAND CONTACTS . . . .   10.95          6   100.0     6     CRMSCA  
     SURFACE . . . . . . . .   23.08         97    39.1   248     CRMSCA  
     BURIED  . . . . . . . .   21.19        112    45.7   245     CRMSCA  
     CORE  . . . . . . . . .   20.80        121    58.5   207     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   22.21       1011    41.9  2415     CRMSMC  
     WELL ORDERED  . . . . .   22.47        881    48.0  1834     CRMSMC  
     NO INTER CONTACTS . . .   21.86        860    42.9  2005     CRMSMC  
     SHIFTED CHAIN . . . . .   23.02        873    39.8  2192     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .   22.81        575    46.7  1230     CRMSMC  
     SHIFTED SS UNITS  . . .    0.00          0     0.0     0     CRMSMC  
     LARGE SHIFTS/INSERTIONS   23.99        424    30.3  1400     CRMSMC  
     LIGAND CONTACTS . . . .   12.49         25    96.2    26     CRMSMC  
     SURFACE . . . . . . . .   23.18        463    38.3  1209     CRMSMC  
     BURIED  . . . . . . . .   21.36        548    45.4  1206     CRMSMC  
     CORE  . . . . . . . . .   20.83        587    57.8  1015     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   22.77        175    10.8  1617     CRMSSC  
     WELL ORDERED  . . . . .   22.43        152    13.1  1162     CRMSSC  
     NO INTER CONTACTS . . .   22.42        148    11.5  1283     CRMSSC  
     RELIABLE SIDE CHAINS  .   22.77        175    13.2  1329     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0  1058     CRMSSC  
     SECONDARY STRUCTURE . .   22.99        103    11.6   891     CRMSSC  
     LARGE SHIFTS/INSERTIONS   24.79         72     7.5   960     CRMSSC  
     LIGAND CONTACTS . . . .   16.18          4    20.0    20     CRMSSC  
     SURFACE . . . . . . . .   24.03         75     8.6   869     CRMSSC  
     BURIED  . . . . . . . .   21.78        100    13.4   748     CRMSSC  
     CORE  . . . . . . . . .   21.25        103    15.7   657     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   22.21       1011    28.2  3589     CRMSALL 
     WELL ORDERED  . . . . .   22.47        881    33.2  2655     CRMSALL 
     NO INTER CONTACTS . . .   21.86        860    29.4  2923     CRMSALL 
     SHIFTED CHAIN . . . . .   23.02        873    26.7  3267     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .   22.81        575    30.5  1887     CRMSALL 
     LARGE SHIFTS/INSERTIONS   23.99        424    20.2  2104     CRMSALL 
     LIGAND CONTACTS . . . .   12.49         25    61.0    41     CRMSALL 
     SURFACE . . . . . . . .   23.18        463    24.9  1861     CRMSALL 
     BURIED  . . . . . . . .   21.36        548    31.7  1728     CRMSALL 
     CORE  . . . . . . . . .   20.83        587    39.5  1485     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.00      0     0.0    20       9-GAPEGAEYLRAVLRAPVYEA-28   
 CA  LOOP  2     0.00      0     0.0     3      43-RLD-45   
 CA  LOOP  3     0.00      0     0.0     8      69-MMAGLTEE-76   
 CA  LOOP  4     0.00      0     0.0     5     111-TATAD-115  
 CA  LOOP  5    22.73      5   100.0     5     123-GFGGE-127  
 CA  LOOP  6     7.22     11   100.0    11     131-HGANFDEAKAK-141  
 CA  LOOP  7    15.55      3   100.0     3     149-QGF-151  
 CA  LOOP  8    33.78      5   100.0     5     202-QLMPQ-206  
 CA  LOOP  9     9.51     15   100.0    15     218-ACLKAALDAGHPVDL-232  
 CA  LOOP 10    18.87      4   100.0     4     236-GLFA-239  
 CA  LOOP 11    18.16     13   100.0    13     249-DETFRLCQEYLDD-261  
 CA  LOOP 12    25.22      6   100.0     6     300-IALHNI-305  
 CA  LOOP 13    33.44     24    13.0   184     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     0.00      0     0.0    98       9-GAPEGAEYLRAVLRAPVYEA-28   
 MC  LOOP  2     0.00      0     0.0    15      43-RLD-45   
 MC  LOOP  3     0.00      0     0.0    39      69-MMAGLTEE-76   
 MC  LOOP  4     0.00      0     0.0    25     111-TATAD-115  
 MC  LOOP  5    22.53     22   100.0    22     123-GFGGE-127  
 MC  LOOP  6     6.96     53    98.1    54     131-HGANFDEAKAK-141  
 MC  LOOP  7    15.52     14   100.0    14     149-QGF-151  
 MC  LOOP  8    33.85     25   100.0    25     202-QLMPQ-206  
 MC  LOOP  9     9.60     74   100.0    74     218-ACLKAALDAGHPVDL-232  
 MC  LOOP 10    19.23     19   100.0    19     236-GLFA-239  
 MC  LOOP 11    18.17     65   100.0    65     249-DETFRLCQEYLDD-261  
 MC  LOOP 12    25.80     28    93.3    30     300-IALHNI-305  
 MC  LOOP 13    34.06    115    12.8   901     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     0.00      0     0.0   142       9-GAPEGAEYLRAVLRAPVYEA-28   
 ALL LOOP  2     0.00      0     0.0    27      43-RLD-45   
 ALL LOOP  3     0.00      0     0.0    58      69-MMAGLTEE-76   
 ALL LOOP  4     0.00      0     0.0    32     111-TATAD-115  
 ALL LOOP  5    22.53     22    68.8    32     123-GFGGE-127  
 ALL LOOP  6     6.96     53    70.7    75     131-HGANFDEAKAK-141  
 ALL LOOP  7    15.52     14    58.3    24     149-QGF-151  
 ALL LOOP  8    33.85     25    61.0    41     202-QLMPQ-206  
 ALL LOOP  9     9.60     74    76.3    97     218-ACLKAALDAGHPVDL-232  
 ALL LOOP 10    19.23     19   100.0    19     236-GLFA-239  
 ALL LOOP 11    18.17     65    64.4   101     249-DETFRLCQEYLDD-261  
 ALL LOOP 12    25.80     28    59.6    47     300-IALHNI-305  
 ALL LOOP 13    34.06    115     8.4  1377     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 CA  LOOP  5     1.95      5   100.0     5     123-GFGGE-127  
 CA  LOOP  6     4.16     11   100.0    11     131-HGANFDEAKAK-141  
 CA  LOOP  7     0.31      3   100.0     3     149-QGF-151  
 CA  LOOP  8     2.23      5   100.0     5     202-QLMPQ-206  
 CA  LOOP  9     2.95     15   100.0    15     218-ACLKAALDAGHPVDL-232  
 CA  LOOP 10     2.35      4   100.0     4     236-GLFA-239  
 CA  LOOP 11     3.69     13   100.0    13     249-DETFRLCQEYLDD-261  
 CA  LOOP 12     3.04      6   100.0     6     300-IALHNI-305  
 CA  LOOP 13     9.87     24    13.0   184     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 MC  LOOP  5     2.47     22   100.0    22     123-GFGGE-127  
 MC  LOOP  6     4.08     53    98.1    54     131-HGANFDEAKAK-141  
 MC  LOOP  7     1.18     14   100.0    14     149-QGF-151  
 MC  LOOP  8     2.53     25   100.0    25     202-QLMPQ-206  
 MC  LOOP  9     3.18     74   100.0    74     218-ACLKAALDAGHPVDL-232  
 MC  LOOP 10     3.01     19   100.0    19     236-GLFA-239  
 MC  LOOP 11     4.09     65   100.0    65     249-DETFRLCQEYLDD-261  
 MC  LOOP 12     3.33     28    93.3    30     300-IALHNI-305  
 MC  LOOP 13     9.97    115    12.8   901     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 ALL LOOP  5     2.47     22    68.8    32     123-GFGGE-127  
 ALL LOOP  6     4.08     53    70.7    75     131-HGANFDEAKAK-141  
 ALL LOOP  7     1.18     14    58.3    24     149-QGF-151  
 ALL LOOP  8     2.53     25    61.0    41     202-QLMPQ-206  
 ALL LOOP  9     3.18     74    76.3    97     218-ACLKAALDAGHPVDL-232  
 ALL LOOP 10     3.01     19   100.0    19     236-GLFA-239  
 ALL LOOP 11     4.09     65    64.4   101     249-DETFRLCQEYLDD-261  
 ALL LOOP 12     3.33     28    59.6    47     300-IALHNI-305  
 ALL LOOP 13     9.97    115     8.4  1377     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   19.123      1.000       0.500    209    42.4   493     ERRCA  
     WELL ORDERED  . . . . .   19.275      1.000       0.500    185    48.4   382     ERRCA  
     NO INTER CONTACTS . . .   18.790      1.000       0.500    178    43.4   410     ERRCA  
     SHIFTED CHAIN . . . . .   19.828      1.000       0.500    181    40.4   448     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .   19.547      1.000       0.500    118    47.4   249     ERRCA  
     LARGE SHIFTS/INSERTIONS   20.084      1.000       0.500     88    30.8   286     ERRCA  
     LIGAND CONTACTS . . . .   10.545      1.000       0.500      6   100.0     6     ERRCA  
     SURFACE . . . . . . . .   19.922      1.000       0.500     97    39.1   248     ERRCA  
     BURIED  . . . . . . . .   18.431      1.000       0.500    112    45.7   245     ERRCA  
     CORE  . . . . . . . . .   18.424      1.000       0.500    121    58.5   207     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   19.203      1.000       0.500   1011    41.9  2415     ERRMC  
     WELL ORDERED  . . . . .   19.546      1.000       0.500    881    48.0  1834     ERRMC  
     NO INTER CONTACTS . . .   18.811      1.000       0.500    860    42.9  2005     ERRMC  
     SHIFTED CHAIN . . . . .   19.940      1.000       0.500    873    39.8  2192     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .   19.627      1.000       0.500    575    46.7  1230     ERRMC  
     LARGE SHIFTS/INSERTIONS   20.244      1.000       0.500    424    30.3  1400     ERRMC  
     LIGAND CONTACTS . . . .   11.699      1.000       0.500     25    96.2    26     ERRMC  
     SURFACE . . . . . . . .   19.982      1.000       0.500    463    38.3  1209     ERRMC  
     BURIED  . . . . . . . .   18.545      1.000       0.500    548    45.4  1206     ERRMC  
     CORE  . . . . . . . . .   18.451      1.000       0.500    587    57.8  1015     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   19.644      1.000       0.500    175    10.8  1617     ERRSC  
     WELL ORDERED  . . . . .   19.387      1.000       0.500    152    13.1  1162     ERRSC  
     NO INTER CONTACTS . . .   19.270      1.000       0.500    148    11.5  1283     ERRSC  
     RELIABLE SIDE CHAINS  .   19.644      1.000       0.500    175    13.2  1329     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0  1058     ERRSC  
     SHIFTED CHAIN . . . . .   20.412      1.000       0.500    149    10.1  1475     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .   19.683      1.000       0.500    103    11.6   891     ERRSC  
     LARGE SHIFTS/INSERTIONS   20.868      1.000       0.500     72     7.5   960     ERRSC  
     LIGAND CONTACTS . . . .   15.337      1.000       0.500      4    20.0    20     ERRSC  
     SURFACE . . . . . . . .   20.485      1.000       0.500     75     8.6   869     ERRSC  
     BURIED  . . . . . . . .   19.013      1.000       0.500    100    13.4   748     ERRSC  
     CORE  . . . . . . . . .   18.788      1.000       0.500    103    15.7   657     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   19.203      1.000       0.500   1011    28.2  3589     ERRALL 
     WELL ORDERED  . . . . .   19.546      1.000       0.500    881    33.2  2655     ERRALL 
     NO INTER CONTACTS . . .   18.811      1.000       0.500    860    29.4  2923     ERRALL 
     SHIFTED CHAIN . . . . .   19.940      1.000       0.500    873    26.7  3267     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .   19.627      1.000       0.500    575    30.5  1887     ERRALL 
     LARGE SHIFTS/INSERTIONS   20.244      1.000       0.500    424    20.2  2104     ERRALL 
     LIGAND CONTACTS . . . .   11.699      1.000       0.500     25    61.0    41     ERRALL 
     SURFACE . . . . . . . .   19.982      1.000       0.500    463    24.9  1861     ERRALL 
     BURIED  . . . . . . . .   18.545      1.000       0.500    548    31.7  1728     ERRALL 
     CORE  . . . . . . . . .   18.451      1.000       0.500    587    39.5  1485     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         4         9        16        42     209     493   DISTCA 
CA  (P)      0.00      0.81      1.83      3.25      8.52             493   DISTCA 
CA  (RMS)    0.00      1.35      1.88      3.10      6.12                   DISTCA 
 
ALL (N)         0        17        39        87       213    1011    3589   DISTALL 
ALL (P)      0.00      0.47      1.09      2.42      5.93            3589   DISTALL 
ALL (RMS)    0.00      1.53      2.13      3.34      6.32                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         207           121            88          RMSLSI 
CA  (P)       41.99         24.54         17.85          RMSLSI 
CA  (RMS)      1.49         20.80         23.74          RMSLSI 
 
 
 
END of the results output 
