 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0002.inter 
CONANA-LIGAND          ../CONANA/T0002.ligand 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp2.T0002.1wsy_B.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 3589 atoms, MODEL 3366 atoms, 3151 common with TARGET 
           Number of atoms possible to evaluate: 815 
 
 
 CA-RMS TARGET<->PARENT(1wsy_B)	 2.508811 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    75.79           43.5   308    31.4   981     ARMSMC  
     WELL ORDERED  . . . . .    69.88           45.6   158    21.7   729     ARMSMC  
     NO INTER CONTACTS . . .    74.87           45.5   233    28.6   816     ARMSMC  
     SHIFTED CHAIN . . . . .    75.79           43.5   308    34.6   891     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    61.02           58.3   127    25.6   497     ARMSMC  
     LARGE SHIFTS/INSERTIONS    75.79           43.5   308    54.3   567     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0    10     ARMSMC  
     SURFACE . . . . . . . .    80.82           38.3   180    36.5   493     ARMSMC  
     BURIED  . . . . . . . .    68.08           50.8   128    26.2   488     ARMSMC  
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   414     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   339     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   230     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   271     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   303     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0   271     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   306     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   187     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0   193     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   174     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   165     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   146     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   262     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   179     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   208     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   186     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0   232     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   243     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   145     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0   155     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   150     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   107     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    93     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    49     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    70     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    86     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    89     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    56     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    52     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    65     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    41     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    32     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    17     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.27615     r(1,2) =   0.83598     r(1,3) =   0.47421 
 r(2,1) =  -0.18594     r(2,2) =   0.43761     r(2,3) =  -0.87973 
 r(3,1) =  -0.94296     r(3,2) =  -0.33111     r(3,3) =   0.03460 
THE OFFSET VECTOR: 
 v(1) =  15.30618     v(2) = -33.10593     v(3) =  94.88844 
 
 Number of iteration 24                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =  17.99           (Number of atoms:  169) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   17.99        169    34.3   493     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1065                            CRMSCA  
     WELL ORDERED  . . . . .   17.51         99    25.9   382     CRMSCA  
     NO INTER CONTACTS . . .   17.92        122    29.8   410     CRMSCA  
     SHIFTED CHAIN . . . . .   17.99        169    37.7   448     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .   17.16         71    28.5   249     CRMSCA  
     SHIFTED SS UNITS  . . .    0.00          0     0.0     0     CRMSCA  
     LARGE SHIFTS/INSERTIONS   17.99        169    59.1   286     CRMSCA  
     SURFACE . . . . . . . .   19.20        101    40.7   248     CRMSCA  
     BURIED  . . . . . . . .   16.04         68    27.8   245     CRMSCA  
     CORE  . . . . . . . . .    0.00          0     0.0   207     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   18.03        815    33.7  2415     CRMSMC  
     WELL ORDERED  . . . . .   17.63        470    25.6  1834     CRMSMC  
     NO INTER CONTACTS . . .   17.98        586    29.2  2005     CRMSMC  
     SHIFTED CHAIN . . . . .   18.03        815    37.2  2192     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .   17.21        350    28.5  1230     CRMSMC  
     SHIFTED SS UNITS  . . .    0.00          0     0.0     0     CRMSMC  
     LARGE SHIFTS/INSERTIONS   18.03        815    58.2  1400     CRMSMC  
     SURFACE . . . . . . . .   19.21        478    39.5  1209     CRMSMC  
     BURIED  . . . . . . . .   16.21        337    27.9  1206     CRMSMC  
     CORE  . . . . . . . . .    0.00          0     0.0  1015     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   18.31        139     8.6  1617     CRMSSC  
     WELL ORDERED  . . . . .   17.53         87     7.5  1162     CRMSSC  
     NO INTER CONTACTS . . .   18.24         98     7.6  1283     CRMSSC  
     RELIABLE SIDE CHAINS  .   18.31        139    10.5  1329     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0  1058     CRMSSC  
     SECONDARY STRUCTURE . .   17.23         66     7.4   891     CRMSSC  
     LARGE SHIFTS/INSERTIONS   18.31        139    14.5   960     CRMSSC  
     SURFACE . . . . . . . .   19.88         74     8.5   869     CRMSSC  
     BURIED  . . . . . . . .   16.34         65     8.7   748     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   657     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   18.03        815    22.7  3589     CRMSALL 
     WELL ORDERED  . . . . .   17.63        470    17.7  2655     CRMSALL 
     NO INTER CONTACTS . . .   17.98        586    20.0  2923     CRMSALL 
     SHIFTED CHAIN . . . . .   18.03        815    24.9  3267     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .   17.21        350    18.5  1887     CRMSALL 
     LARGE SHIFTS/INSERTIONS   18.03        815    38.7  2104     CRMSALL 
     SURFACE . . . . . . . .   19.21        478    25.7  1861     CRMSALL 
     BURIED  . . . . . . . .   16.21        337    19.5  1728     CRMSALL 
     CORE  . . . . . . . . .    0.00          0     0.0  1485     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.00      0     0.0    20       9-GAPEGAEYLRAVLRAPVYEA-28   
 CA  LOOP  2     0.00      0     0.0     3      43-RLD-45   
 CA  LOOP  3     0.00      0     0.0     8      69-MMAGLTEE-76   
 CA  LOOP  4     0.00      0     0.0     5     111-TATAD-115  
 CA  LOOP  5     0.00      0     0.0     5     123-GFGGE-127  
 CA  LOOP  6     0.00      0     0.0    11     131-HGANFDEAKAK-141  
 CA  LOOP  7     0.00      0     0.0     3     149-QGF-151  
 CA  LOOP  8     0.00      0     0.0     5     202-QLMPQ-206  
 CA  LOOP  9     0.00      0     0.0    15     218-ACLKAALDAGHPVDL-232  
 CA  LOOP 10     0.00      0     0.0     4     236-GLFA-239  
 CA  LOOP 11     0.00      0     0.0    13     249-DETFRLCQEYLDD-261  
 CA  LOOP 12     0.00      0     0.0     6     300-IALHNI-305  
 CA  LOOP 13    17.99    169    91.8   184     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     0.00      0     0.0    98       9-GAPEGAEYLRAVLRAPVYEA-28   
 MC  LOOP  2     0.00      0     0.0    15      43-RLD-45   
 MC  LOOP  3     0.00      0     0.0    39      69-MMAGLTEE-76   
 MC  LOOP  4     0.00      0     0.0    25     111-TATAD-115  
 MC  LOOP  5     0.00      0     0.0    22     123-GFGGE-127  
 MC  LOOP  6     0.00      0     0.0    54     131-HGANFDEAKAK-141  
 MC  LOOP  7     0.00      0     0.0    14     149-QGF-151  
 MC  LOOP  8     0.00      0     0.0    25     202-QLMPQ-206  
 MC  LOOP  9     0.00      0     0.0    74     218-ACLKAALDAGHPVDL-232  
 MC  LOOP 10     0.00      0     0.0    19     236-GLFA-239  
 MC  LOOP 11     0.00      0     0.0    65     249-DETFRLCQEYLDD-261  
 MC  LOOP 12     0.00      0     0.0    30     300-IALHNI-305  
 MC  LOOP 13    18.03    815    90.5   901     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     0.00      0     0.0   142       9-GAPEGAEYLRAVLRAPVYEA-28   
 ALL LOOP  2     0.00      0     0.0    27      43-RLD-45   
 ALL LOOP  3     0.00      0     0.0    58      69-MMAGLTEE-76   
 ALL LOOP  4     0.00      0     0.0    32     111-TATAD-115  
 ALL LOOP  5     0.00      0     0.0    32     123-GFGGE-127  
 ALL LOOP  6     0.00      0     0.0    75     131-HGANFDEAKAK-141  
 ALL LOOP  7     0.00      0     0.0    24     149-QGF-151  
 ALL LOOP  8     0.00      0     0.0    41     202-QLMPQ-206  
 ALL LOOP  9     0.00      0     0.0    97     218-ACLKAALDAGHPVDL-232  
 ALL LOOP 10     0.00      0     0.0    19     236-GLFA-239  
 ALL LOOP 11     0.00      0     0.0   101     249-DETFRLCQEYLDD-261  
 ALL LOOP 12     0.00      0     0.0    47     300-IALHNI-305  
 ALL LOOP 13    18.03    815    59.2  1377     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  9 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 10 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 11 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 12 cannot be considered (not enough atoms). 
 
 CA  LOOP 13    17.99    169    91.8   184     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  9 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 10 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 11 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 12 cannot be considered (not enough atoms). 
 
 MC  LOOP 13    18.03    815    90.5   901     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  9 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 10 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 11 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 12 cannot be considered (not enough atoms). 
 
 ALL LOOP 13    18.03    815    59.2  1377     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.839      1.000       0.500    169    34.3   493     ERRCA  
     WELL ORDERED  . . . . .   16.329      1.000       0.500     99    25.9   382     ERRCA  
     NO INTER CONTACTS . . .   16.603      1.000       0.500    122    29.8   410     ERRCA  
     SHIFTED CHAIN . . . . .   16.839      1.000       0.500    169    37.7   448     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .   16.000      1.000       0.500     71    28.5   249     ERRCA  
     LARGE SHIFTS/INSERTIONS   16.839      1.000       0.500    169    59.1   286     ERRCA  
     SURFACE . . . . . . . .   18.095      1.000       0.500    101    40.7   248     ERRCA  
     BURIED  . . . . . . . .   14.975      1.000       0.500     68    27.8   245     ERRCA  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   207     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.875      1.000       0.500    815    33.7  2415     ERRMC  
     WELL ORDERED  . . . . .   16.498      1.000       0.500    470    25.6  1834     ERRMC  
     NO INTER CONTACTS . . .   16.663      1.000       0.500    586    29.2  2005     ERRMC  
     SHIFTED CHAIN . . . . .   16.875      1.000       0.500    815    37.2  2192     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .   16.064      1.000       0.500    350    28.5  1230     ERRMC  
     LARGE SHIFTS/INSERTIONS   16.875      1.000       0.500    815    58.2  1400     ERRMC  
     SURFACE . . . . . . . .   18.085      1.000       0.500    478    39.5  1209     ERRMC  
     BURIED  . . . . . . . .   15.158      1.000       0.500    337    27.9  1206     ERRMC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0  1015     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.129      1.000       0.500    139     8.6  1617     ERRSC  
     WELL ORDERED  . . . . .   16.440      1.000       0.500     87     7.5  1162     ERRSC  
     NO INTER CONTACTS . . .   16.898      1.000       0.500     98     7.6  1283     ERRSC  
     RELIABLE SIDE CHAINS  .   17.129      1.000       0.500    139    10.5  1329     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0  1058     ERRSC  
     SHIFTED CHAIN . . . . .   17.129      1.000       0.500    139     9.4  1475     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .   16.039      1.000       0.500     66     7.4   891     ERRSC  
     LARGE SHIFTS/INSERTIONS   17.129      1.000       0.500    139    14.5   960     ERRSC  
     SURFACE . . . . . . . .   18.778      1.000       0.500     74     8.5   869     ERRSC  
     BURIED  . . . . . . . .   15.250      1.000       0.500     65     8.7   748     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   657     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.875      1.000       0.500    815    22.7  3589     ERRALL 
     WELL ORDERED  . . . . .   16.498      1.000       0.500    470    17.7  2655     ERRALL 
     NO INTER CONTACTS . . .   16.663      1.000       0.500    586    20.0  2923     ERRALL 
     SHIFTED CHAIN . . . . .   16.875      1.000       0.500    815    24.9  3267     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .   16.064      1.000       0.500    350    18.5  1887     ERRALL 
     LARGE SHIFTS/INSERTIONS   16.875      1.000       0.500    815    38.7  2104     ERRALL 
     SURFACE . . . . . . . .   18.085      1.000       0.500    478    25.7  1861     ERRALL 
     BURIED  . . . . . . . .   15.158      1.000       0.500    337    19.5  1728     ERRALL 
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0  1485     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         0        25     169     493   DISTCA 
CA  (P)      0.00      0.00      0.00      0.00      5.07             493   DISTCA 
CA  (RMS)    0.00      0.00      0.00      0.00      8.58                   DISTCA 
 
ALL (N)         0         0         0         4       117     815    3589   DISTALL 
ALL (P)      0.00      0.00      0.00      0.11      3.26            3589   DISTALL 
ALL (RMS)    0.00      0.00      0.00      4.59      8.47                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         207             0           169          RMSLSI 
CA  (P)       41.99          0.00         34.28          RMSLSI 
CA  (RMS)      1.49          0.00         17.99          RMSLSI 
 
 
 
END of the results output 
