 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0002.inter 
CONANA-LIGAND          ../CONANA/T0002.ligand 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp2.T0002.1wsy_B.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 3589 atoms, MODEL 3956 atoms, 3589 common with TARGET 
           Number of atoms possible to evaluate: 1265 
 
 
 CA-RMS TARGET<->PARENT(1wsy_B)	 2.508811 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    76.23           43.3   314    32.0   981     ARMSMC  
     WELL ORDERED  . . . . .    73.28           42.5   160    21.9   729     ARMSMC  
     NO INTER CONTACTS . . .    76.62           44.1   236    28.9   816     ARMSMC  
     SHIFTED CHAIN . . . . .    76.23           43.3   314    35.2   891     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    62.00           56.9   130    26.2   497     ARMSMC  
     LARGE SHIFTS/INSERTIONS    76.23           43.3   314    55.4   567     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0    10     ARMSMC  
     SURFACE . . . . . . . .    80.00           39.9   183    37.1   493     ARMSMC  
     BURIED  . . . . . . . .    70.62           48.1   131    26.8   488     ARMSMC  
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   414     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    97.31           30.6   108    31.9   339     ARMSSC1 
     WELL ORDERED  . . . . .    99.83           28.3    53    23.0   230     ARMSSC1 
     NO INTER CONTACTS . . .   101.58           23.1    78    28.8   271     ARMSSC1 
     RELIABLE SIDE CHAINS  .    97.55           30.0   100    33.0   303     ARMSSC1 
     CHANGED ANGLES  . . . .    97.31           30.6   108    39.9   271     ARMSSC1 
     SHIFTED CHAIN . . . . .    97.31           30.6   108    35.3   306     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .   102.32           25.5    51    27.3   187     ARMSSC1 
     LARGE SHIFTS/INSERTIONS    97.31           30.6   108    56.0   193     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .    97.68           31.0    58    33.3   174     ARMSSC1 
     BURIED  . . . . . . . .    96.89           30.0    50    30.3   165     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   146     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    87.04           41.0    83    31.7   262     ARMSSC2 
     WELL ORDERED  . . . . .    82.13           46.5    43    24.0   179     ARMSSC2 
     NO INTER CONTACTS . . .    88.55           41.0    61    29.3   208     ARMSSC2 
     RELIABLE SIDE CHAINS  .    75.85           50.0    58    31.2   186     ARMSSC2 
     CHANGED ANGLES  . . . .    87.04           41.0    83    35.8   232     ARMSSC2 
     SHIFTED CHAIN . . . . .    87.04           41.0    83    34.2   243     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .    87.43           43.6    39    26.9   145     ARMSSC2 
     LARGE SHIFTS/INSERTIONS    87.04           41.0    83    53.5   155     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .    87.82           40.9    44    29.3   150     ARMSSC2 
     BURIED  . . . . . . . .    86.15           41.0    39    34.8   112     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   107     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    94.03           25.0    28    30.1    93     ARMSSC3 
     WELL ORDERED  . . . . .    97.48           20.0    10    20.4    49     ARMSSC3 
     NO INTER CONTACTS . . .    88.39           29.4    17    24.3    70     ARMSSC3 
     RELIABLE SIDE CHAINS  .    95.13           20.8    24    31.6    76     ARMSSC3 
     CHANGED ANGLES  . . . .    94.03           25.0    28    32.6    86     ARMSSC3 
     SHIFTED CHAIN . . . . .    94.03           25.0    28    31.5    89     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .    96.09           18.2    11    19.6    56     ARMSSC3 
     LARGE SHIFTS/INSERTIONS    94.03           25.0    28    53.8    52     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .    97.56           23.8    21    32.3    65     ARMSSC3 
     BURIED  . . . . . . . .    82.54           28.6     7    25.0    28     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    41     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   105.58           18.2    11    31.4    35     ARMSSC4 
     WELL ORDERED  . . . . .    98.82           20.0     5    27.8    18     ARMSSC4 
     NO INTER CONTACTS . . .   108.36           16.7     6    23.1    26     ARMSSC4 
     RELIABLE SIDE CHAINS  .   105.58           18.2    11    31.4    35     ARMSSC4 
     CHANGED ANGLES  . . . .   105.58           18.2    11    33.3    33     ARMSSC4 
     SHIFTED CHAIN . . . . .   105.58           18.2    11    34.4    32     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .   113.53           25.0     4    19.0    21     ARMSSC4 
     LARGE SHIFTS/INSERTIONS   105.58           18.2    11    64.7    17     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .   109.78           25.0     8    30.8    26     ARMSSC4 
     BURIED  . . . . . . . .    93.45            0.0     3    33.3     9     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.50439     r(1,2) =  -0.50929     r(1,3) =   0.69729 
 r(2,1) =   0.75021     r(2,2) =  -0.65829     r(2,3) =   0.06186 
 r(3,1) =   0.42752     r(3,2) =   0.55432     r(3,3) =   0.71411 
THE OFFSET VECTOR: 
 v(1) = -14.87613     v(2) = -41.65773     v(3) =  37.34768 
 
 Number of iteration 24                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =  14.30           (Number of atoms:  171) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.30        171    34.7   493     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0836                            CRMSCA  
     WELL ORDERED  . . . . .   14.77        100    26.2   382     CRMSCA  
     NO INTER CONTACTS . . .   13.04        123    30.0   410     CRMSCA  
     SHIFTED CHAIN . . . . .   14.30        171    38.2   448     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .   12.90         72    28.9   249     CRMSCA  
     SHIFTED SS UNITS  . . .    0.00          0     0.0     0     CRMSCA  
     LARGE SHIFTS/INSERTIONS   14.30        171    59.8   286     CRMSCA  
     SURFACE . . . . . . . .   15.09        101    40.7   248     CRMSCA  
     BURIED  . . . . . . . .   13.06         70    28.6   245     CRMSCA  
     CORE  . . . . . . . . .    0.00          0     0.0   207     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.31        837    34.7  2415     CRMSMC  
     WELL ORDERED  . . . . .   14.83        480    26.2  1834     CRMSMC  
     NO INTER CONTACTS . . .   13.07        601    30.0  2005     CRMSMC  
     SHIFTED CHAIN . . . . .   14.31        837    38.2  2192     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .   12.97        358    29.1  1230     CRMSMC  
     SHIFTED SS UNITS  . . .    0.00          0     0.0     0     CRMSMC  
     LARGE SHIFTS/INSERTIONS   14.31        837    59.8  1400     CRMSMC  
     SURFACE . . . . . . . .   15.05        489    40.4  1209     CRMSMC  
     BURIED  . . . . . . . .   13.18        348    28.9  1206     CRMSMC  
     CORE  . . . . . . . . .    0.00          0     0.0  1015     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   15.28        581    35.9  1617     CRMSSC  
     WELL ORDERED  . . . . .   15.80        349    30.0  1162     CRMSSC  
     NO INTER CONTACTS . . .   13.70        397    30.9  1283     CRMSSC  
     RELIABLE SIDE CHAINS  .   15.19        491    36.9  1329     CRMSSC  
     CHANGED ANGLES  . . . .   15.61        428    40.5  1058     CRMSSC  
     SECONDARY STRUCTURE . .   14.69        286    32.1   891     CRMSSC  
     LARGE SHIFTS/INSERTIONS   15.28        581    60.5   960     CRMSSC  
     SURFACE . . . . . . . .   16.52        324    37.3   869     CRMSSC  
     BURIED  . . . . . . . .   13.57        257    34.4   748     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   657     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   14.76       1265    35.2  3589     CRMSALL 
     WELL ORDERED  . . . . .   15.35        737    27.8  2655     CRMSALL 
     NO INTER CONTACTS . . .   13.36        889    30.4  2923     CRMSALL 
     SHIFTED CHAIN . . . . .   14.76       1265    38.7  3267     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .   13.85        574    30.4  1887     CRMSALL 
     LARGE SHIFTS/INSERTIONS   14.76       1265    60.1  2104     CRMSALL 
     SURFACE . . . . . . . .   15.72        728    39.1  1861     CRMSALL 
     BURIED  . . . . . . . .   13.35        537    31.1  1728     CRMSALL 
     CORE  . . . . . . . . .    0.00          0     0.0  1485     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.00      0     0.0    20       9-GAPEGAEYLRAVLRAPVYEA-28   
 CA  LOOP  2     0.00      0     0.0     3      43-RLD-45   
 CA  LOOP  3     0.00      0     0.0     8      69-MMAGLTEE-76   
 CA  LOOP  4     0.00      0     0.0     5     111-TATAD-115  
 CA  LOOP  5     0.00      0     0.0     5     123-GFGGE-127  
 CA  LOOP  6     0.00      0     0.0    11     131-HGANFDEAKAK-141  
 CA  LOOP  7     0.00      0     0.0     3     149-QGF-151  
 CA  LOOP  8     0.00      0     0.0     5     202-QLMPQ-206  
 CA  LOOP  9     0.00      0     0.0    15     218-ACLKAALDAGHPVDL-232  
 CA  LOOP 10     0.00      0     0.0     4     236-GLFA-239  
 CA  LOOP 11     0.00      0     0.0    13     249-DETFRLCQEYLDD-261  
 CA  LOOP 12     0.00      0     0.0     6     300-IALHNI-305  
 CA  LOOP 13    14.30    171    92.9   184     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     0.00      0     0.0    98       9-GAPEGAEYLRAVLRAPVYEA-28   
 MC  LOOP  2     0.00      0     0.0    15      43-RLD-45   
 MC  LOOP  3     0.00      0     0.0    39      69-MMAGLTEE-76   
 MC  LOOP  4     0.00      0     0.0    25     111-TATAD-115  
 MC  LOOP  5     0.00      0     0.0    22     123-GFGGE-127  
 MC  LOOP  6     0.00      0     0.0    54     131-HGANFDEAKAK-141  
 MC  LOOP  7     0.00      0     0.0    14     149-QGF-151  
 MC  LOOP  8     0.00      0     0.0    25     202-QLMPQ-206  
 MC  LOOP  9     0.00      0     0.0    74     218-ACLKAALDAGHPVDL-232  
 MC  LOOP 10     0.00      0     0.0    19     236-GLFA-239  
 MC  LOOP 11     0.00      0     0.0    65     249-DETFRLCQEYLDD-261  
 MC  LOOP 12     0.00      0     0.0    30     300-IALHNI-305  
 MC  LOOP 13    14.31    837    92.9   901     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     0.00      0     0.0   142       9-GAPEGAEYLRAVLRAPVYEA-28   
 ALL LOOP  2     0.00      0     0.0    27      43-RLD-45   
 ALL LOOP  3     0.00      0     0.0    58      69-MMAGLTEE-76   
 ALL LOOP  4     0.00      0     0.0    32     111-TATAD-115  
 ALL LOOP  5     0.00      0     0.0    32     123-GFGGE-127  
 ALL LOOP  6     0.00      0     0.0    75     131-HGANFDEAKAK-141  
 ALL LOOP  7     0.00      0     0.0    24     149-QGF-151  
 ALL LOOP  8     0.00      0     0.0    41     202-QLMPQ-206  
 ALL LOOP  9     0.00      0     0.0    97     218-ACLKAALDAGHPVDL-232  
 ALL LOOP 10     0.00      0     0.0    19     236-GLFA-239  
 ALL LOOP 11     0.00      0     0.0   101     249-DETFRLCQEYLDD-261  
 ALL LOOP 12     0.00      0     0.0    47     300-IALHNI-305  
 ALL LOOP 13    14.76   1265    91.9  1377     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  9 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 10 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 11 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 12 cannot be considered (not enough atoms). 
 
 CA  LOOP 13    14.30    171    92.9   184     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  9 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 10 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 11 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 12 cannot be considered (not enough atoms). 
 
 MC  LOOP 13    14.31    837    92.9   901     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  9 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 10 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 11 cannot be considered (not enough atoms). 
 
 WARNING! LOOP 12 cannot be considered (not enough atoms). 
 
 ALL LOOP 13    14.76   1265    91.9  1377     318-NVNFHGLRYVSERCELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFELGGYDCHDETNNPAFRFFLAG-514  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.992      0.776       0.388    171    34.7   493     ERRCA  
     WELL ORDERED  . . . . .   11.582      0.782       0.391    100    26.2   382     ERRCA  
     NO INTER CONTACTS . . .    9.691      0.751       0.375    123    30.0   410     ERRCA  
     SHIFTED CHAIN . . . . .   10.992      0.776       0.388    171    38.2   448     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .    9.585      0.741       0.371     72    28.9   249     ERRCA  
     LARGE SHIFTS/INSERTIONS   10.992      0.776       0.388    171    59.8   286     ERRCA  
     SURFACE . . . . . . . .   11.977      0.806       0.403    101    40.7   248     ERRCA  
     BURIED  . . . . . . . .    9.570      0.732       0.366     70    28.6   245     ERRCA  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   207     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.010      0.777       0.388    837    34.7  2415     ERRMC  
     WELL ORDERED  . . . . .   11.602      0.784       0.392    480    26.2  1834     ERRMC  
     NO INTER CONTACTS . . .    9.736      0.753       0.376    601    30.0  2005     ERRMC  
     SHIFTED CHAIN . . . . .   11.010      0.777       0.388    837    38.2  2192     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .    9.645      0.744       0.372    358    29.1  1230     ERRMC  
     LARGE SHIFTS/INSERTIONS   11.010      0.777       0.388    837    59.8  1400     ERRMC  
     SURFACE . . . . . . . .   11.932      0.805       0.402    489    40.4  1209     ERRMC  
     BURIED  . . . . . . . .    9.714      0.737       0.369    348    28.9  1206     ERRMC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0  1015     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.111      0.793       0.397    581    35.9  1617     ERRSC  
     WELL ORDERED  . . . . .   12.640      0.797       0.399    349    30.0  1162     ERRSC  
     NO INTER CONTACTS . . .   10.580      0.768       0.384    397    30.9  1283     ERRSC  
     RELIABLE SIDE CHAINS  .   12.114      0.799       0.400    491    36.9  1329     ERRSC  
     CHANGED ANGLES  . . . .   12.463      0.798       0.399    428    40.5  1058     ERRSC  
     SHIFTED CHAIN . . . . .   12.111      0.793       0.397    581    39.4  1475     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .   11.421      0.775       0.388    286    32.1   891     ERRSC  
     LARGE SHIFTS/INSERTIONS   12.111      0.793       0.397    581    60.5   960     ERRSC  
     SURFACE . . . . . . . .   13.569      0.827       0.414    324    37.3   869     ERRSC  
     BURIED  . . . . . . . .   10.273      0.750       0.375    257    34.4   748     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   657     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.501      0.784       0.392   1265    35.2  3589     ERRALL 
     WELL ORDERED  . . . . .   12.139      0.791       0.396    737    27.8  2655     ERRALL 
     NO INTER CONTACTS . . .   10.098      0.760       0.380    889    30.4  2923     ERRALL 
     SHIFTED CHAIN . . . . .   11.501      0.784       0.392   1265    38.7  3267     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .   10.520      0.760       0.380    574    30.4  1887     ERRALL 
     LARGE SHIFTS/INSERTIONS   11.501      0.784       0.392   1265    60.1  2104     ERRALL 
     SURFACE . . . . . . . .   12.635      0.814       0.407    728    39.1  1861     ERRALL 
     BURIED  . . . . . . . .    9.964      0.744       0.372    537    31.1  1728     ERRALL 
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0  1485     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         2        12        36        87     171     493   DISTCA 
CA  (P)      0.00      0.41      2.43      7.30     17.65             493   DISTCA 
CA  (RMS)    0.00      1.81      2.42      3.80      6.28                   DISTCA 
 
ALL (N)         1        15        61       241       594    1265    3589   DISTALL 
ALL (P)      0.03      0.42      1.70      6.71     16.55            3589   DISTALL 
ALL (RMS)    0.86      1.62      2.30      3.77      6.25                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         207             0           171          RMSLSI 
CA  (P)       41.99          0.00         34.69          RMSLSI 
CA  (RMS)      1.49          0.00         14.30          RMSLSI 
 
 
 
END of the results output 
