 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 2 2 , MODEL 2 , TARGET 108 
 
# WARNING! TARGET 887 atoms, MODEL 890 atoms, 881 common with TARGET 
           Number of atoms possible to evaluate: 10 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   120.55            0.0     2     0.9   214     ARMSMC  
     SECONDARY STRUCTURE . .   120.55            0.0     2     1.8   110     ARMSMC  
     SURFACE . . . . . . . .   165.28            0.0     1     0.8   126     ARMSMC  
     BURIED  . . . . . . . .    41.81            0.0     1     1.1    88     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    97     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    93     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    48     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    38     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    53     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    40     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    47     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    33     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    21     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    18     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    11     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    12     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     4     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      67       N     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       L     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.00 
 
 NUMBER_OF_CA_Tg:  108      NUMBER_OF_CA_Pr:    2      PERCENT_OF_CA:   1.85  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0  
 GDT PERCENT_OF_CA_Pr    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 GDT PERCENT_OF_CA_Tg    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 GDT FRAGMENT: Beg-End   0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0   
 GDT RMS_LOCAL           0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 GDT RMS_ALL_CA          0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 
 
 TEST (CA)  RMS =   0.04               (Number of atoms:    2) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    0.44          2     1.9   108     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2176                            CRMSCA  
     SECONDARY STRUCTURE . .    0.44          2     3.6    55     CRMSCA  
     SURFACE . . . . . . . .    0.48          1     1.6    64     CRMSCA  
     BURIED  . . . . . . . .    0.39          1     2.3    44     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    1.81         10     1.9   537     CRMSMC  
     SECONDARY STRUCTURE . .    1.81         10     3.6   275     CRMSMC  
     SURFACE . . . . . . . .    1.78          5     1.6   318     CRMSMC  
     BURIED  . . . . . . . .    1.85          5     2.3   219     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    2.23          2     0.4   455     CRMSSC  
     RELIABLE SIDE CHAINS  .    2.23          2     0.5   373     CRMSSC  
     SECONDARY STRUCTURE . .    2.23          2     0.8   241     CRMSSC  
     SURFACE . . . . . . . .    2.89          1     0.4   266     CRMSSC  
     BURIED  . . . . . . . .    1.27          1     0.5   189     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    1.81         10     1.1   887     CRMSALL 
     SECONDARY STRUCTURE . .    1.81         10     2.2   461     CRMSALL 
     SURFACE . . . . . . . .    1.78          5     1.0   522     CRMSALL 
     BURIED  . . . . . . . .    1.85          5     1.4   365     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.433      1.000       0.500      2     1.9   108     ERRCA  
     SECONDARY STRUCTURE . .    0.433      1.000       0.500      2     3.6    55     ERRCA  
     SURFACE . . . . . . . .    0.476      1.000       0.500      1     1.6    64     ERRCA  
     BURIED  . . . . . . . .    0.390      1.000       0.500      1     2.3    44     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.405      1.000       0.500     10     1.9   537     ERRMC  
     SECONDARY STRUCTURE . .    1.405      1.000       0.500     10     3.6   275     ERRMC  
     SURFACE . . . . . . . .    1.387      1.000       0.500      5     1.6   318     ERRMC  
     BURIED  . . . . . . . .    1.423      1.000       0.500      5     2.3   219     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.080      1.000       0.500      2     0.4   455     ERRSC  
     RELIABLE SIDE CHAINS  .    2.080      1.000       0.500      2     0.5   373     ERRSC  
     SECONDARY STRUCTURE . .    2.080      1.000       0.500      2     0.8   241     ERRSC  
     SURFACE . . . . . . . .    2.888      1.000       0.500      1     0.4   266     ERRSC  
     BURIED  . . . . . . . .    1.272      1.000       0.500      1     0.5   189     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.405      1.000       0.500     10     1.1   887     ERRALL 
     SECONDARY STRUCTURE . .    1.405      1.000       0.500     10     2.2   461     ERRALL 
     SURFACE . . . . . . . .    1.387      1.000       0.500      5     1.0   522     ERRALL 
     BURIED  . . . . . . . .    1.423      1.000       0.500      5     1.4   365     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         2         2         2         2         2       2     108   DISTCA 
CA  (P)      1.85      1.85      1.85      1.85      1.85             108   DISTCA 
CA  (RMS)    0.44      0.44      0.44      0.44      0.44                   DISTCA 
 
ALL (N)         5         7         9        10        10      10     887   DISTALL 
ALL (P)      0.56      0.79      1.01      1.13      1.13             887   DISTALL 
ALL (RMS)    0.45      0.81      1.48      1.81      1.81                   DISTALL 
 
 
 
 
END of the results output 
