 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 108 , MODEL 108 , TARGET 241 
#          The number of residues possible to evaluate: 108 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   111     L     E     C             1.00 
 SSP   112     Q     C     C             1.00 
 SSP   113     E     C     C             1.00 
 SSP   114     P     C     C             1.00 
 SSP   115     F     C     C             1.00 
 SSP   116     G     C     C             1.00 
 SSP   117     A     C     C             1.00 
 SSP   118     G     C     E             1.00 
 SSP   119     V     C     E             1.00 
 SSP   120     D     C     E             1.00 
 SSP   121     L     C     E             1.00 
 SSP   122     A     E     E             1.00 
 SSP   123     L     E     E             1.00 
 SSP   124     I     E     E             1.00 
 SSP   125     R     E     C             1.00 
 SSP   126     L     E     C             1.00 
 SSP   127     K     C     C             1.00 
 SSP   128     P     C     C             1.00 
 SSP   129     D     C     C             1.00 
 SSP   130     Q     C     C             1.00 
 SSP   131     N     C     C             1.00 
 SSP   132     G     C     E             1.00 
 SSP   133     V     C     E             1.00 
 SSP   134     S     C     E             1.00 
 SSP   135     L     H     E             1.00 
 SSP   136     G     H     E             1.00 
 SSP  BREAK 
 SSP   140     S     C     C             1.00 
 SSP   141     P     C     C             1.00 
 SSP   142     A     C     C             1.00 
 SSP   143     K     E     H             1.00 
 SSP   144     I     E     H             1.00 
 SSP   145     G     C     H             1.00 
 SSP   146     T     C     C             1.00 
 SSP   147     S     H     C             1.00 
 SSP   148     N     H     C             1.00 
 SSP   149     D     H     C             1.00 
 SSP   150     L     C     C             1.00 
 SSP  BREAK 
 SSP   153     G     C     C             1.00 
 SSP   154     D     C     C             1.00 
 SSP   155     K     E     C             1.00 
 SSP   156     L     E     E             1.00 
 SSP   157     E     E     E             1.00 
 SSP   158     L     E     C             1.00 
 SSP   159     I     E     E             1.00 
 SSP   160     G     E     C             1.00 
 SSP   161     Y     C     C             1.00 
 SSP   162     P     C     C             1.00 
 SSP   163     F     C     C             1.00 
 SSP   164     D     C     C             1.00 
 SSP   165     H     C     C             1.00 
 SSP   166     K     C     C             1.00 
 SSP   167     V     C     C             1.00 
 SSP   168     N     C     C             1.00 
 SSP   169     Q     C     E             1.00 
 SSP   170     M     C     C             1.00 
 SSP   171     H     E     E             1.00 
 SSP   172     R     E     C             1.00 
 SSP   173     S     E     E             1.00 
 SSP  BREAK 
 SSP   175     I     E     E             1.00 
 SSP   176     E     E     C             1.00 
 SSP   177     L     E     C             1.00 
 SSP   178     T     E     C             1.00 
 SSP   179     T     C     C             1.00 
 SSP   180     L     H     C             1.00 
 SSP   181     S     H     C             1.00 
 SSP  BREAK 
 SSP   186     Y     E     E             1.00 
 SSP   187     Y     E     E             1.00 
 SSP   188     G     C     E             1.00 
 SSP   189     F     C     E             1.00 
 SSP   190     T     C     E             1.00 
 SSP   191     V     C     C             1.00 
 SSP   192     P     H     E             1.00 
 SSP   193     G     H     E             1.00 
 SSP   194     N     H     E             1.00 
 SSP   195     S     C     C             1.00 
 SSP   196     G     C     C             1.00 
 SSP   197     S     C     C             1.00 
 SSP   198     G     E     C             1.00 
 SSP   199     I     E     C             1.00 
 SSP   200     F     E     C             1.00 
 SSP   201     N     C     C             1.00 
 SSP   202     S     C     E             1.00 
 SSP   203     N     C     C             1.00 
 SSP   204     G     C     C             1.00 
 SSP   205     E     E     C             1.00 
 SSP   206     L     E     C             1.00 
 SSP   207     V     E     C             1.00 
 SSP   208     G     E     E             1.00 
 SSP   209     I     E     E             1.00 
 SSP   210     H     E     E             1.00 
 SSP   211     S     E     E             1.00 
 SSP   212     S     E     C             1.00 
 SSP   213     K     E     C             1.00 
 SSP   214     V     E     C             1.00 
 SSP   215     S     E     C             1.00 
 SSP   216     H     C     C             1.00 
 SSP   217     L     C     C             1.00 
 SSP   218     D     C     C             1.00 
 SSP   219     R     C     C             1.00 
 SSP   220     E     C     E             1.00 
 SSP   221     H     C     E             1.00 
 SSP   222     Q     E     E             1.00 
 SSP   223     I     E     E             1.00 
 SSP   224     N     E     E             1.00 
 SSP   225     Y     E     E             1.00 
 SSP   226     G     E     E             1.00 
 SSP   227     V     E     C             1.00 
 SSP   228     G     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              54.6       0.0     45.5     72.2     44.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        49.5       0.0     43.8     61.2     44.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           13              38.5              23.1 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     108    100.0     54.6 
 
 BIN  0.00 - 1.00      1.00     108    100.0     54.6 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         102             102           102            241 
 ALL CONTACTS (< 8.0A)     477             393           477           1230 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       477        172   36.06   43.77   13.98       0     0.00         393      1230  |   1-9999 
 RES CONTACTS       201        161   80.10   82.99   27.90       0     0.00         194       577  |   1-4    
 RES CONTACTS        24          2    8.33    5.71    2.50       0     0.00          35        80  |   5-8    
 RES CONTACTS       252          9    3.57    5.49    1.57       0     0.00         164       573  |   9-9999 
 
 
 
# WARNING! TARGET 1878 atoms, MODEL 1605 atoms, 1584 common with TARGET 
           Number of atoms possible to evaluate: 519 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    77.39           38.3   206    42.9   480     ARMSMC  
     SECONDARY STRUCTURE . .    62.14           41.8    79    36.6   216     ARMSMC  
     SURFACE . . . . . . . .    90.76           30.2    86    35.8   240     ARMSMC  
     BURIED  . . . . . . . .    66.16           44.2   120    50.0   240     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   204     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   187     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    94     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   103     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   158     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   113     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    72     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    83     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    75     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    46     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    27     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    29     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    29     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  111 - 136  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14    116 - 129      4.79    12.98 
  LONGEST_CONTINUOUS_SEGMENT    14    117 - 130      4.66    13.83 
  LONGEST_CONTINUOUS_SEGMENT    14    123 - 136      4.89    18.76 
  LCS LOCAL_SCORE:             50.89 
 
 FRAGMENT  2  140 - 150  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    142 - 150      4.31     7.30 
  LCS LOCAL_SCORE:             78.51 
 
 FRAGMENT  3  153 - 173  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    153 - 172      4.73     5.08 
  LONGEST_CONTINUOUS_SEGMENT    20    154 - 173      4.78     5.25 
  LCS LOCAL_SCORE:             95.24 
 
 FRAGMENT  4  175 - 181  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    175 - 181      1.80     1.80 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  186 - 228  43   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    200 - 219      4.87    14.19 
  LONGEST_CONTINUOUS_SEGMENT    20    201 - 220      4.68    14.32 
  LONGEST_CONTINUOUS_SEGMENT    20    202 - 221      4.94    14.27 
  LCS LOCAL_SCORE:             37.32 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  111 - 136  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    118 - 125      1.75    16.16 
  LONGEST_CONTINUOUS_SEGMENT     8    119 - 126      1.87    16.85 
  LCS LOCAL_SCORE:             27.37 
 
 FRAGMENT  2  140 - 150  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    144 - 148      1.79     9.47 
  LONGEST_CONTINUOUS_SEGMENT     5    146 - 150      1.86    11.32 
  LCS LOCAL_SCORE:             42.15 
 
 FRAGMENT  3  153 - 173  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    154 - 162      1.83     6.35 
  LCS LOCAL_SCORE:             36.73 
 
 FRAGMENT  4  175 - 181  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    175 - 181      1.80     1.80 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  186 - 228  43   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    209 - 217      1.97    14.87 
  LONGEST_CONTINUOUS_SEGMENT     9    219 - 227      1.80    15.85 
  LONGEST_CONTINUOUS_SEGMENT     9    220 - 228      1.68    16.26 
  LCS LOCAL_SCORE:             18.23 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  111 - 136  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    111 - 116      0.98    37.56 
  LONGEST_CONTINUOUS_SEGMENT     6    120 - 125      0.93    17.57 
  LCS LOCAL_SCORE:             19.53 
 
 FRAGMENT  2  140 - 150  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    141 - 144      0.67    13.84 
  LCS LOCAL_SCORE:             30.58 
 
 FRAGMENT  3  153 - 173  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    155 - 160      0.48     7.29 
  LONGEST_CONTINUOUS_SEGMENT     6    167 - 172      0.96     8.96 
  LONGEST_CONTINUOUS_SEGMENT     6    168 - 173      0.84     9.57 
  LCS LOCAL_SCORE:             23.81 
 
 FRAGMENT  4  175 - 181  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    175 - 180      0.78     2.18 
  LCS LOCAL_SCORE:             79.59 
 
 FRAGMENT  5  186 - 228  43   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    220 - 227      0.73    16.05 
  LCS LOCAL_SCORE:             11.57 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     111       L     6    7   10       E        0   2   2   2   2   2   3   3   3   4   5   6   6   6   6   7   8   8   8   9  
 LCS     112       Q     6    7   10       C        1   2   2   2   2   2   3   3   3   4   5   6   6   6   6   7   8   8   8   9  
 LCS     113       E     6    7   10       C        1   2   2   2   2   2   3   3   3   3   5   6   6   6   6   7   8   8   8   9  
 LCS     114       P     6    7   10       C        1   2   2   2   2   2   3   3   3   4   5   6   6   6   6   7   8   8   8   9  
 LCS     115       F     6    7   10       C        1   2   2   2   2   2   3   3   3   4   5   6   6   6   6   7   8   8   8   9  
 LCS     116       G     6    7   14       C        1   1   2   2   2   2   3   3   3   4   5   6   6   6   6   7   8   8   8   9  
 LCS     117       A     3    7   14       C        1   1   1   1   2   2   3   3   3   4   5   6   6   6   6   7   8   8   8  10  
 LCS     118       G     4    8   14       C        1   1   1   2   3   3   4   4   4   8   9  10  10  10  11  12  13  14  14  14  
 LCS     119       V     4    8   14       C        1   1   2   2   3   3   4   5   7   8   9  10  10  10  11  12  13  14  14  15  
 LCS     120       D     6    8   14       C        1   2   3   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     121       L     6    8   14       C        2   2   3   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     122       A     6    8   14       E        2   2   3   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     123       L     6    8   14       E        2   2   3   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     124       I     6    8   14       E        1   2   3   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     125       R     6    8   14       E        1   1   2   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  14  15  
 LCS     126       L     4    8   14       E        1   1   1   2   3   3   3   6   7   8   9  10  10  10  11  12  13  14  14  15  
 LCS     127       K     4    7   14       C        1   1   1   2   2   2   3   4   4   4   4   4   5   6  11  12  13  14  14  15  
 LCS     128       P     4    7   14       C        1   1   1   2   2   2   3   4   4   4   4   4   5   6   6   6   6   7   8  14  
 LCS     129       D     4    7   14       C        1   1   1   2   2   2   3   4   4   4   4   4   5   6   6   6   6  11  13  15  
 LCS     130       Q     4    7   14       C        1   1   1   1   2   2   2   3   3   4   4   4   5   5   6   6   6   7   8  13  
 LCS     131       N     4    6   14       C        1   1   1   1   2   2   2   3   3   4   4   4   5   5   6   6   6   7   8   9  
 LCS     132       G     5    6   14       C        1   1   2   2   2   3   3   3   3   4   4   4   5   5   6   6   6   7   8   9  
 LCS     133       V     5    6   14       C        1   1   2   2   2   3   3   3   3   4   4   4   5   5   6   6   6   7   8   9  
 LCS     134       S     5    6   14       C        1   1   2   2   2   3   3   3   3   4   4   4   5   5   6   6   6   7   8   9  
 LCS     135       L     5    6   14       H        1   1   2   2   2   3   3   3   3   4   4   4   5   5   6   6   7   7   8   9  
 LCS     136       G     5    6   14       H        0   1   2   2   2   3   3   3   3   4   4   4   5   6   6   7   7   8   9   9  
 LCS     137       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     138       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     139       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     140       S     3    4    7       C        0   1   1   1   1   3   3   3   4   4   4   5   5   6   6   7   7   8   9   9  
 LCS     141       P     4    4    7       C        1   1   1   1   1   3   3   3   3   4   4   4   4   4   4   4   5   8   9   9  
 LCS     142       A     4    4    9       C        1   1   2   2   2   3   3   3   3   4   4   4   4   4   4   4   5   6   6   9  
 LCS     143       K     4    4    9       E        1   1   1   1   1   2   3   3   3   4   4   4   4   4   4   4   8   9  11  12  
 LCS     144       I     4    5    9       E        1   1   1   1   2   2   2   3   3   4   5   6   8   8   8   8   9  10  11  12  
 LCS     145       G     3    5    9       C        0   1   1   1   2   2   2   3   3   4   5   6   8   9  10  12  14  15  17  18  
 LCS     146       T     3    5    9       C        1   1   2   2   2   2   3   4   5   6   7   9  10  10  12  13  15  16  17  18  
 LCS     147       S     3    5    9       H        1   1   3   3   4   4   4   6   7   8   9  10  10  10  12  13  15  16  17  18  
 LCS     148       N     3    5    9       H        1   1   1   1   2   4   6   7   7   8   9  10  10  10  12  13  15  16  17  18  
 LCS     149       D     3    5    9       H        1   1   1   1   2   2   2   3   3   4   5   9   9  11  12  13  15  16  17  18  
 LCS     150       L     3    5    9       C        0   1   1   1   2   2   4   4   4   4   5   9   9  11  12  12  14  15  17  18  
 LCS     151       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     152       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     153       G     3    8   20       C        1   1   1   1   1   3   4   4   5   5   6   7   7   9  10  11  12  14  15  16  
 LCS     154       D     3    9   20       C        1   1   1   2   3   3   4   5   5   7   7   9   9  11  12  12  12  14  15  16  
 LCS     155       K     6    9   20       E        1   2   2   2   3   3   4   5   5   7   8   9   9  11  12  12  12  14  15  17  
 LCS     156       L     6    9   20       E        1   2   2   2   3   3   4   5   6   7   7   9   9  11  12  12  14  16  17  18  
 LCS     157       E     6    9   20       E        1   2   2   2   3   3   4   5   6   7   7   9   9  11  12  12  14  16  17  18  
 LCS     158       L     6    9   20       E        1   2   2   2   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     159       I     6    9   20       E        1   2   2   3   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     160       G     6    9   20       E        1   2   2   3   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     161       Y     3    9   20       C        1   1   2   2   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     162       P     3    9   20       C        1   1   2   3   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     163       F     3    6   20       C        1   1   1   2   2   3   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     164       D     4    6   20       C        1   1   1   2   2   3   4   4   5   6   6   7   9  11  12  13  15  16  17  18  
 LCS     165       H     4    6   20       C        1   1   1   2   2   2   3   4   5   5   5   7   8   8   9  13  15  16  17  18  
 LCS     166       K     4    6   20       C        1   1   1   2   2   2   4   4   5   6   7   7   9  11  12  13  15  16  17  18  
 LCS     167       V     6    7   20       C        1   1   2   3   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     168       N     6    7   20       C        1   2   2   3   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     169       Q     6    7   20       C        1   2   2   3   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     170       M     6    7   20       C        1   2   2   3   3   4   4   5   6   7   7   9   9  11  12  13  15  16  17  18  
 LCS     171       H     6    7   20       E        1   2   2   3   3   4   4   5   6   7   7   9   9  11  12  12  14  16  17  18  
 LCS     172       R     6    7   20       E        1   2   2   3   3   4   4   5   6   7   7   9   9  11  12  12  12  13  15  17  
 LCS     173       S     6    7   20       E        1   2   2   2   3   4   4   5   6   7   7   9   9  11  12  12  12  13  14  16  
 LCS     174       E     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     175       I     6    7    7       E        1   2   2   2   3   3   4   5   6   7   8   9   9  11  12  12  12  16  17  18  
 LCS     176       E     6    7    7       E        1   2   2   2   3   3   4   5   6   7   8   8   9  11  12  12  12  14  15  17  
 LCS     177       L     6    7    7       E        1   1   2   2   3   3   4   4   5   5   6   7   9  10  11  13  15  16  17  18  
 LCS     178       T     6    7    7       E        1   2   2   2   2   3   4   4   5   5   6   7   9  10  11  13  15  16  17  18  
 LCS     179       T     6    7    7       C        1   2   2   2   2   3   4   5   7   8   9  10  10  10  12  13  15  16  17  18  
 LCS     180       L     6    7    7       H        1   2   2   2   2   3   4   4   5   5   7   7   8  10  12  13  15  16  17  18  
 LCS     181       S     3    7    7       H        1   1   2   2   2   2   3   3   3   3   5   6   7   9  12  13  15  16  17  18  
 LCS     182       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     183       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     184       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     185       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     186       Y     3    6   10       E        1   1   1   1   2   3   5   7   7   8   9  10  10  10  11  13  15  16  17  18  
 LCS     187       Y     3    7   12       E        1   1   1   2   2   2   3   4   4   4   5   7   8   9  11  13  15  16  17  18  
 LCS     188       G     5    7   12       C        1   1   2   2   2   2   3   4   4   5   6   7   7   9  10  12  12  14  15  18  
 LCS     189       F     5    7   12       C        1   1   2   2   2   2   3   3   4   4   6   7   7   8   9   9  12  14  15  16  
 LCS     190       T     5    7   12       C        1   1   2   2   2   2   3   3   5   5   6   6   7   7   8   8   9  10  10  12  
 LCS     191       V     5    7   12       C        1   1   2   2   2   3   4   4   5   5   6   6   7   7   8   8   9   9  10  10  
 LCS     192       P     5    7   12       H        1   1   2   2   3   3   3   4   4   4   4   5   6   7   7   7   8   9  10  10  
 LCS     193       G     3    7   12       H        1   1   1   2   2   2   2   3   4   4   4   5   6   7   7   7   7   8   9   9  
 LCS     194       N     3    6   12       H        1   1   1   2   2   2   2   3   4   4   4   5   6   6   7   7   7   8   9  10  
 LCS     195       S     3    6   12       C        1   1   1   2   2   2   2   3   4   4   4   5   6   6   7   7  12  12  14  15  
 LCS     196       G     4    6   12       C        1   1   1   2   2   2   2   3   4   4   4   7   9  11  12  12  12  13  14  15  
 LCS     197       S     4    7   12       C        1   1   1   2   2   2   2   3   3   3   4   5   6   6   7   7   7   7   9  15  
 LCS     198       G     5    7   12       E        1   1   2   2   2   2   2   3   4   4   4   5   6   6   7   7  12  13  14  15  
 LCS     199       I     5    7   12       E        1   1   2   2   2   2   2   3   3   4   4   4   4   6   6  12  12  12  13  15  
 LCS     200       F     5    7   20       E        1   1   2   2   2   2   2   3   3   6   7   9   9  11  12  13  15  16  17  18  
 LCS     201       N     5    7   20       C        1   1   2   2   2   2   3   3   4   5   7   8   9  10  12  13  15  16  17  18  
 LCS     202       S     5    7   20       C        1   1   2   2   3   4   5   6   6   7   8   9   9  11  12  13  15  16  17  18  
 LCS     203       N     4    7   20       C        1   1   1   2   3   4   5   6   6   7   8   9   9  11  12  13  15  16  17  18  
 LCS     204       G     4    5   20       C        1   1   1   1   3   4   5   6   6   7   9  10  10  11  12  12  14  16  17  17  
 LCS     205       E     4    8   20       E        1   1   2   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     206       L     4    8   20       E        1   1   2   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     207       V     4    8   20       E        1   1   2   2   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     208       G     4    8   20       E        1   1   2   2   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     209       I     4    9   20       E        1   1   2   2   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     210       H     4    9   20       E        2   2   3   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     211       S     4    9   20       E        1   1   2   2   3   4   5   6   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     212       S     4    9   20       E        1   1   2   2   3   4   5   6   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     213       K     3    9   20       E        2   2   3   3   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  16  
 LCS     214       V     5    9   20       E        1   2   2   2   4   5   6   7   7   8   9  10  10  10  11  12  13  14  15  17  
 LCS     215       S     5    9   20       E        1   2   2   2   3   4   6   7   7   8   9  10  10  10  12  13  15  16  17  18  
 LCS     216       H     5    9   20       C        1   2   2   2   3   3   4   4   5   7   8   8   9  10  12  13  15  16  17  18  
 LCS     217       L     5    9   20       C        1   2   2   2   3   4   4   6   6   7   8   8   9   9  11  13  15  16  17  18  
 LCS     218       D     5    7   20       C        1   2   2   2   2   3   5   6   6   7   8   8   9  10  12  13  15  16  17  18  
 LCS     219       R     4    9   20       C        1   1   1   2   2   2   3   3   3   4   5   6   7  10  12  13  15  16  17  18  
 LCS     220       E     8    9   20       C        2   2   3   3   3   3   3   4   4   5   6   7   7   9  10  13  15  16  17  18  
 LCS     221       H     8    9   20       C        2   2   3   3   3   3   3   4   4   5   6   7   7   9  12  13  15  16  17  18  
 LCS     222       Q     8    9   12       E        2   2   3   3   3   3   3   4   4   5   6   7   7   9  12  13  15  16  17  18  
 LCS     223       I     8    9   12       E        2   2   3   3   3   3   3   4   4   5   6   7   7   9  12  13  15  16  17  18  
 LCS     224       N     8    9   12       E        2   2   3   3   3   3   3   4   4   5   6   7   7   8  10  11  13  15  17  18  
 LCS     225       Y     8    9   12       E        1   2   3   3   3   3   3   4   4   5   6   7   8   9  10  11  12  14  15  16  
 LCS     226       G     8    9   12       E        2   2   3   3   3   3   3   4   4   5   6   7   8   9  10  11  12  14  15  16  
 LCS     227       V     8    9   12       E        2   2   3   3   3   3   3   4   4   5   6   7   7   8  10  11  12  14  15  16  
 LCS     228       G     5    9   12       E        1   1   1   2   2   2   3   3   4   4   5   7   7   9  10  11  12  14  15  16  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.91 
 
 NUMBER_OF_CA_Tg:  241      NUMBER_OF_CA_Pr:  108      PERCENT_OF_CA:  44.81  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       7       8       9      11      14      15      17      18      21      23      25      26      27      29      33      37      39      41      44  
 GDT PERCENT_OF_CA_Pr    4.63    6.48    7.41    8.33   10.19   12.96   13.89   15.74   16.67   19.44   21.30   23.15   24.07   25.00   26.85   30.56   34.26   36.11   37.96   40.74 
 GDT PERCENT_OF_CA_Tg    2.07    2.90    3.32    3.73    4.56    5.81    6.22    7.05    7.47    8.71    9.54   10.37   10.79   11.20   12.03   13.69   15.35   16.18   17.01   18.26 
 GDT FRAGMENT: Beg-End 220-227 120-213 220-227 120-213 120-213 120-214 120-214 120-215 120-214 119-215 118-215 118-215 118-215 149-204 149-204 146-223 146-223 146-223 146-223 145-224 
 GDT RMS_LOCAL           0.26    0.62    0.73    1.13    1.68    2.06    2.31    2.62    2.77    3.31    3.61    3.94    4.18    5.27    5.51    6.26    6.55    6.77    6.91    7.16 
 GDT RMS_ALL_CA         23.24   18.61   23.03   18.07   19.17   18.97   18.90   18.72   18.99   18.81   18.42   18.18   18.02   21.95   21.38   15.12   14.96   15.47   15.44   15.24 
 
 
 TEST (CA)  RMS =  13.60               (Number of atoms:  108) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   13.60        108    44.8   241     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1260                            CRMSCA  
     SECONDARY STRUCTURE . .   13.75         42    38.9   108     CRMSCA  
     SURFACE . . . . . . . .   13.37         45    37.2   121     CRMSCA  
     BURIED  . . . . . . . .   13.77         63    52.5   120     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   13.61        519    44.0  1180     CRMSMC  
     SECONDARY STRUCTURE . .   13.80        204    38.3   533     CRMSMC  
     SURFACE . . . . . . . .   13.20        214    36.1   593     CRMSMC  
     BURIED  . . . . . . . .   13.89        305    52.0   587     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   13.95         87     9.5   914     CRMSSC  
     RELIABLE SIDE CHAINS  .   13.95         87    11.4   764     CRMSSC  
     SECONDARY STRUCTURE . .   13.94         36     8.0   449     CRMSSC  
     SURFACE . . . . . . . .   13.11         34     7.4   461     CRMSSC  
     BURIED  . . . . . . . .   14.47         53    11.7   453     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   13.61        519    27.6  1878     CRMSALL 
     SECONDARY STRUCTURE . .   13.80        204    23.2   881     CRMSALL 
     SURFACE . . . . . . . .   13.20        214    22.6   945     CRMSALL 
     BURIED  . . . . . . . .   13.89        305    32.7   933     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.754      1.000       0.500    108    44.8   241     ERRCA  
     SECONDARY STRUCTURE . .   13.011      1.000       0.500     42    38.9   108     ERRCA  
     SURFACE . . . . . . . .   12.259      1.000       0.500     45    37.2   121     ERRCA  
     BURIED  . . . . . . . .   13.108      1.000       0.500     63    52.5   120     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.781      1.000       0.500    519    44.0  1180     ERRMC  
     SECONDARY STRUCTURE . .   13.046      1.000       0.500    204    38.3   533     ERRMC  
     SURFACE . . . . . . . .   12.157      1.000       0.500    214    36.1   593     ERRMC  
     BURIED  . . . . . . . .   13.219      1.000       0.500    305    52.0   587     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.111      1.000       0.500     87     9.5   914     ERRSC  
     RELIABLE SIDE CHAINS  .   13.111      1.000       0.500     87    11.4   764     ERRSC  
     SECONDARY STRUCTURE . .   13.066      1.000       0.500     36     8.0   449     ERRSC  
     SURFACE . . . . . . . .   12.181      1.000       0.500     34     7.4   461     ERRSC  
     BURIED  . . . . . . . .   13.708      1.000       0.500     53    11.7   453     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.781      1.000       0.500    519    27.6  1878     ERRALL 
     SECONDARY STRUCTURE . .   13.046      1.000       0.500    204    23.2   881     ERRALL 
     SURFACE . . . . . . . .   12.157      1.000       0.500    214    22.6   945     ERRALL 
     BURIED  . . . . . . . .   13.219      1.000       0.500    305    32.7   933     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         2         5        32     108     241   DISTCA 
CA  (P)      0.00      0.00      0.83      2.07     13.28             241   DISTCA 
CA  (RMS)    0.00      0.00      2.77      3.03      7.58                   DISTCA 
 
ALL (N)         0         1         7        28       160     519    1878   DISTALL 
ALL (P)      0.00      0.05      0.37      1.49      8.52            1878   DISTALL 
ALL (RMS)    0.00      1.73      2.60      3.80      7.77                   DISTALL 
 
 
 
 
END of the results output 
