 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 79 , MODEL 79 , TARGET 241 
#          The number of residues possible to evaluate: 79 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   115     F     C     C             1.00 
 SSP   116     G     C     C             1.00 
 SSP   117     A     C     C             1.00 
 SSP   118     G     C     C             1.00 
 SSP   119     V     C     C             1.00 
 SSP   120     D     C     C             1.00 
 SSP   121     L     C     C             1.00 
 SSP   122     A     E     C             1.00 
 SSP   123     L     E     C             1.00 
 SSP   124     I     E     C             1.00 
 SSP   125     R     E     C             1.00 
 SSP   126     L     E     C             1.00 
 SSP   127     K     C     C             1.00 
 SSP   128     P     C     C             1.00 
 SSP   129     D     C     C             1.00 
 SSP   130     Q     C     E             1.00 
 SSP   131     N     C     E             1.00 
 SSP   132     G     C     C             1.00 
 SSP   133     V     C     C             1.00 
 SSP   134     S     C     C             1.00 
 SSP   135     L     H     C             1.00 
 SSP   136     G     H     C             1.00 
 SSP   137     D     H     C             1.00 
 SSP   138     K     C     C             1.00 
 SSP   139     I     C     E             1.00 
 SSP   140     S     C     E             1.00 
 SSP   141     P     C     C             1.00 
 SSP   142     A     C     C             1.00 
 SSP   143     K     E     C             1.00 
 SSP   144     I     E     H             1.00 
 SSP   145     G     C     H             1.00 
 SSP   146     T     C     H             1.00 
 SSP   147     S     H     H             1.00 
 SSP   148     N     H     H             1.00 
 SSP   149     D     H     H             1.00 
 SSP  BREAK 
 SSP   151     K     C     H             1.00 
 SSP   152     D     C     H             1.00 
 SSP   153     G     C     C             1.00 
 SSP   154     D     C     C             1.00 
 SSP   155     K     E     C             1.00 
 SSP   156     L     E     C             1.00 
 SSP   157     E     E     C             1.00 
 SSP   158     L     E     E             1.00 
 SSP   159     I     E     C             1.00 
 SSP   160     G     E     E             1.00 
 SSP   161     Y     C     C             1.00 
 SSP   162     P     C     C             1.00 
 SSP   163     F     C     C             1.00 
 SSP   164     D     C     E             1.00 
 SSP   165     H     C     C             1.00 
 SSP   166     K     C     C             1.00 
 SSP   167     V     C     H             1.00 
 SSP   168     N     C     H             1.00 
 SSP   169     Q     C     H             1.00 
 SSP   170     M     C     H             1.00 
 SSP   171     H     E     H             1.00 
 SSP   172     R     E     H             1.00 
 SSP   173     S     E     H             1.00 
 SSP   174     E     E     C             1.00 
 SSP   175     I     E     C             1.00 
 SSP   176     E     E     H             1.00 
 SSP   177     L     E     H             1.00 
 SSP   178     T     E     H             1.00 
 SSP   179     T     C     H             1.00 
 SSP   180     L     H     H             1.00 
 SSP   181     S     H     C             1.00 
 SSP   182     R     H     C             1.00 
 SSP   183     G     C     C             1.00 
 SSP   184     L     E     C             1.00 
 SSP   185     R     E     C             1.00 
 SSP   186     Y     E     C             1.00 
 SSP   187     Y     E     C             1.00 
 SSP   188     G     C     C             1.00 
 SSP   189     F     C     C             1.00 
 SSP   190     T     C     E             1.00 
 SSP   191     V     C     C             1.00 
 SSP   192     P     H     C             1.00 
 SSP   193     G     H     C             1.00 
 SSP   194     N     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              41.8      33.3      8.0     64.3     32.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        28.0      23.8      6.5     38.4     32.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            9              22.2              22.2 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      79    100.0     41.8 
 
 BIN  0.00 - 1.00      1.00      79    100.0     41.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          77              77            77            241 
 ALL CONTACTS (< 8.0A)     237             243           237           1230 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       237        138   58.23   56.79   11.22       0     0.00         243      1230  |   1-9999 
 RES CONTACTS       182        130   71.43   80.25   22.53       0     0.00         162       577  |   1-4    
 RES CONTACTS        21          3   14.29   16.67    3.75       0     0.00          18        80  |   5-8    
 RES CONTACTS        34          5   14.71    7.94    0.87       0     0.00          63       573  |   9-9999 
 
 
 
# WARNING! TARGET 1878 atoms, MODEL 1678 atoms, 1651 common with TARGET 
           Number of atoms possible to evaluate: 383 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    90.43           37.0   154    32.1   480     ARMSMC  
     SECONDARY STRUCTURE . .    95.26           32.6    46    21.3   216     ARMSMC  
     SURFACE . . . . . . . .    87.85           41.4    70    29.2   240     ARMSMC  
     BURIED  . . . . . . . .    92.52           33.3    84    35.0   240     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   204     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   187     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    94     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   103     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   158     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   113     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    72     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    83     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    75     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    46     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    27     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    29     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    29     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  115 - 149  35   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    133 - 145      4.76    26.07 
  LONGEST_CONTINUOUS_SEGMENT    13    134 - 146      4.59    25.62 
  LCS LOCAL_SCORE:             34.78 
 
 FRAGMENT  2  151 - 194  44   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    152 - 171      4.92    17.06 
  LONGEST_CONTINUOUS_SEGMENT    20    153 - 172      4.87    16.65 
  LONGEST_CONTINUOUS_SEGMENT    20    154 - 173      4.88    16.09 
  LCS LOCAL_SCORE:             42.82 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  115 - 149  35   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    118 - 124      1.31    17.59 
  LONGEST_CONTINUOUS_SEGMENT     7    124 - 130      1.48    24.77 
  LCS LOCAL_SCORE:             16.65 
 
 FRAGMENT  2  151 - 194  44   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    179 - 188      1.67    24.05 
  LCS LOCAL_SCORE:             15.60 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  115 - 149  35   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    120 - 124      0.87    17.56 
  LONGEST_CONTINUOUS_SEGMENT     5    125 - 129      0.78    23.76 
  LCS LOCAL_SCORE:             11.10 
 
 FRAGMENT  2  151 - 194  44   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    155 - 161      0.94    16.84 
  LCS LOCAL_SCORE:              9.61 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     115       F     3    4   10       C        0   1   1   1   1   2   2   2   2   2   2   3   4   5   6   7   7   8   9   9  
 LCS     116       G     3    4   12       C        0   1   1   1   1   2   2   2   2   2   2   3   4   5   6   6   7   8   9   9  
 LCS     117       A     3    4   12       C        0   1   1   1   1   2   2   2   3   3   4   4   4   5   6   6   6   6   6   9  
 LCS     118       G     4    7   12       C        1   1   1   2   2   3   3   3   3   3   4   4   4   5   6   6   7   8   9   9  
 LCS     119       V     4    7   12       C        1   1   2   2   2   3   3   3   3   3   4   4   4   5   6   7   7   8   9   9  
 LCS     120       D     5    7   12       C        1   1   2   2   2   3   3   3   3   3   4   4   4   6   6   7   7   8   9   9  
 LCS     121       L     5    7   12       C        1   1   2   2   2   3   3   3   3   3   4   4   5   6   7   7   7   8   9   9  
 LCS     122       A     5    7   12       E        1   1   2   2   2   3   3   3   3   4   4   5   6   6   8  10  12  13  16  18  
 LCS     123       L     5    7   12       E        0   1   2   2   2   3   3   3   3   4   8  11  12  14  14  16  16  17  17  18  
 LCS     124       I     5    7   12       E        0   1   2   2   2   3   3   3   7   8   9  12  13  14  14  16  16  17  17  18  
 LCS     125       R     5    7   12       E        1   1   2   2   2   3   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     126       L     5    7   12       E        1   1   2   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     127       K     5    7   12       C        1   1   2   2   2   2   3   3   3   4   4   5   6   6   7  11  13  14  15  17  
 LCS     128       P     5    7   12       C        1   1   2   2   2   2   3   3   3   4   4   5   6   6   7   7   7   8   9   9  
 LCS     129       D     5    7   12       C        1   1   2   2   2   2   3   3   3   4   4   5   6   6   7   7   7   8   9   9  
 LCS     130       Q     3    7   12       C        1   1   2   2   2   2   3   3   3   4   4   5   6   6   7   7   7   8   9   9  
 LCS     131       N     3    5   12       C        0   1   1   1   2   2   3   3   3   4   4   5   6   6   7   7   7   8   8   9  
 LCS     132       G     3    4   12       C        0   1   1   1   1   2   2   2   2   4   4   5   6   6   7   7   7   8   9   9  
 LCS     133       V     3    4   13       C        1   1   1   1   1   2   2   2   2   3   4   5   6   6   7   7   7   8   9   9  
 LCS     134       S     3    6   13       C        1   1   1   1   2   2   2   2   3   4   4   4   4   4   5   6   7   8   9   9  
 LCS     135       L     4    6   13       H        1   1   2   2   2   2   2   3   4   4   5   8   8   9  11  12  14  15  17  18  
 LCS     136       G     4    6   13       H        1   1   2   2   2   2   2   3   4   4   5   8   8   9  11  12  14  15  17  18  
 LCS     137       D     4    6   13       H        1   1   2   2   2   2   2   3   4   5   7   9  11  12  13  15  16  17  17  18  
 LCS     138       K     4    6   13       C        1   1   2   2   2   2   2   3   4   7   9  11  13  14  14  16  16  17  17  18  
 LCS     139       I     4    6   13       C        1   1   2   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     140       S     3    6   13       C        1   1   1   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     141       P     3    6   13       C        1   1   1   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     142       A     3    6   13       C        1   1   1   2   2   2   3   6   6   7   9  11  13  14  14  16  16  17  17  18  
 LCS     143       K     3    6   13       E        1   1   1   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     144       I     3    3   13       E        1   1   1   2   2   3   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     145       G     3    5   13       C        1   1   1   2   2   3   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     146       T     4    5   13       C        1   1   1   1   1   2   2   2   3   3   4   4   6   9  11  12  14  15  17  18  
 LCS     147       S     4    5   10       H        1   1   1   1   1   2   2   2   3   3   4   4   4   4   4   4   5   6  13  14  
 LCS     148       N     4    5   10       H        1   1   1   1   1   2   2   2   3   3   4   4   4   4   4   6   7   7   9   9  
 LCS     149       D     4    5   10       H        1   1   1   1   2   2   2   2   3   3   4   4   4   4   4   7   9  11  13  14  
 LCS     150       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     151       K     3    3   17       C        1   1   1   1   1   1   2   2   2   3   4   4   4   4   4   6   7   8   9   9  
 LCS     152       D     3    3   20       C        1   1   1   1   1   1   1   1   2   5   5   6   7   7   8   9   9   9   9   9  
 LCS     153       G     3    3   20       C        1   1   1   1   1   1   1   1   1   4   6   6   7   7   8   9   9   9  10  10  
 LCS     154       D     0    7   20       C        0   0   1   2   2   3   3   4   5   5   6   7   7  12  13  16  16  17  17  18  
 LCS     155       K     7    9   20       E        1   2   2   2   2   3   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     156       L     7    9   20       E        2   2   2   2   2   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     157       E     7    9   20       E        2   2   2   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     158       L     7    9   20       E        2   2   2   2   2   3   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     159       I     7    9   20       E        2   2   2   2   2   4   4   5   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     160       G     7    9   20       E        2   2   2   2   2   3   4   4   5   9   9  12  13  14  14  16  16  17  17  18  
 LCS     161       Y     7    9   20       C        1   2   2   2   2   3   4   5   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     162       P     4    9   20       C        1   1   1   2   2   3   3   4   6   9   9  12  13  14  14  16  16  17  17  18  
 LCS     163       F     4    9   20       C        1   1   1   2   2   3   3   4   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     164       D     4    5   20       C        1   1   1   2   2   2   2   4   4   6   7   7   8  13  14  16  16  17  17  18  
 LCS     165       H     4    5   20       C        1   1   1   2   2   2   3   6   7   8   9  11  12  14  14  16  16  17  17  18  
 LCS     166       K     4    5   20       C        1   1   1   2   2   3   4   6   7   8   8   9  10  12  13  14  16  17  17  18  
 LCS     167       V     4    5   20       C        1   1   1   2   2   2   3   4   5   7   8   9   9  11  12  13  14  15  17  18  
 LCS     168       N     4    5   20       C        1   1   1   2   2   2   3   3   4   5   7   7   9  10  11  12  13  15  15  16  
 LCS     169       Q     3    5   20       C        1   1   1   2   2   2   3   4   5   6   7   7   9  10  10  12  13  15  15  16  
 LCS     170       M     3    5   20       C        0   1   1   1   2   2   3   4   5   6   7   7   8   9  10  11  12  13  14  16  
 LCS     171       H     3    3   20       E        0   1   1   1   1   2   3   4   4   5   7   7   8   9  10  11  12  13  13  14  
 LCS     172       R     3    3   20       E        0   1   1   1   1   2   3   4   4   5   7   7   8   9  10  11  12  13  13  14  
 LCS     173       S     3    4   20       E        0   1   1   2   2   2   3   4   5   5   7   7   8   9  10  11  12  13  14  18  
 LCS     174       E     3    4   18       E        0   1   1   2   2   2   3   3   5   5   6   7   8   9  10  11  12  13  13  14  
 LCS     175       I     3    4   18       E        0   1   1   1   1   2   3   4   5   5   6   7   8   9  10  11  12  13  14  17  
 LCS     176       E     3    4   18       E        0   1   1   1   1   2   4   4   5   5   6   8   9  10  12  12  14  15  17  18  
 LCS     177       L     3    4   18       E        0   1   2   2   2   2   4   4   5   5   6   8   9  10  12  12  14  14  15  18  
 LCS     178       T     3    7   18       E        1   1   2   2   2   2   4   4   5   5   6   8   9  11  12  12  14  15  17  18  
 LCS     179       T     6   10   18       C        1   2   2   3   3   3   4   4   5   7   9  11  12  14  14  16  16  17  17  18  
 LCS     180       L     6   10   18       H        2   2   2   3   3   3   4   4   5   7   9  12  13  14  14  16  16  17  17  18  
 LCS     181       S     6   10   18       H        2   2   2   3   3   3   4   4   5   7   9  12  13  14  14  16  16  17  17  18  
 LCS     182       R     6   10   18       H        2   2   2   3   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     183       G     6   10   18       C        2   2   2   3   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     184       L     6   10   18       E        1   1   2   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     185       R     4   10   18       E        1   1   1   3   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     186       Y     4   10   18       E        1   2   2   3   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     187       Y     4   10   18       E        0   1   1   3   3   3   4   4   5   6   7   9  10  12  13  16  16  17  17  18  
 LCS     188       G     4   10   18       C        2   2   2   3   3   3   4   4   5   6   7   9  11  12  13  16  16  17  17  18  
 LCS     189       F     3    9   18       C        1   1   1   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     190       T     3    9   18       C        1   1   1   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     191       V     3    9   18       C        1   1   1   2   3   4   4   6   7   9   9  12  13  14  14  16  16  17  17  18  
 LCS     192       P     3    4   16       H        1   1   1   1   1   2   3   4   5   7   9  12  13  14  14  16  16  17  17  18  
 LCS     193       G     3    3   16       H        1   1   2   2   2   2   3   4   5   7   9  11  13  14  14  16  16  17  17  18  
 LCS     194       N     3    3   16       H        1   1   1   1   1   1   2   2   2   2   2   4   4   6   6   7   9  11  13  13  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.55 
 
 NUMBER_OF_CA_Tg:  241      NUMBER_OF_CA_Pr:   79      PERCENT_OF_CA:  32.78  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       7       7       8       9      10      12      16      19      22      24      29      32      34      36      39      40      41      42      45  
 GDT PERCENT_OF_CA_Pr    6.33    8.86    8.86   10.13   11.39   12.66   15.19   20.25   24.05   27.85   30.38   36.71   40.51   43.04   45.57   49.37   50.63   51.90   53.16   56.96 
 GDT PERCENT_OF_CA_Tg    2.07    2.90    2.90    3.32    3.73    4.15    4.98    6.64    7.88    9.13    9.96   12.03   13.28   14.11   14.94   16.18   16.60   17.01   17.43   18.67 
 GDT FRAGMENT: Beg-End 180-188 179-188 179-188 179-188 179-188 139-191 139-191 125-191 125-186 125-191 125-191 124-192 124-193 123-192 123-193 123-193 123-193 123-193 123-193 123-193 
 GDT RMS_LOCAL           0.18    0.61    0.61    0.87    1.29    2.02    2.45    3.43    3.41    3.81    4.00    4.61    4.79    5.09    5.22    5.54    5.68    5.86    6.01    6.54 
 GDT RMS_ALL_CA         38.84   38.87   38.87   38.79   39.12   15.74   16.02   15.50   15.81   15.67   15.61   15.39   15.40   15.16   15.17   15.17   15.05   15.05   14.97   14.70 
 
 
 TEST (CA)  RMS =  13.64               (Number of atoms:   79) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   13.64         79    32.8   241     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1726                            CRMSCA  
     SECONDARY STRUCTURE . .    9.66         23    21.3   108     CRMSCA  
     SURFACE . . . . . . . .   16.18         36    29.8   121     CRMSCA  
     BURIED  . . . . . . . .   11.07         43    35.8   120     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   13.62        383    32.5  1180     CRMSMC  
     SECONDARY STRUCTURE . .    9.78        112    21.0   533     CRMSMC  
     SURFACE . . . . . . . .   15.99        174    29.3   593     CRMSMC  
     BURIED  . . . . . . . .   11.27        209    35.6   587     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   13.52         67     7.3   914     CRMSSC  
     RELIABLE SIDE CHAINS  .   13.52         67     8.8   764     CRMSSC  
     SECONDARY STRUCTURE . .   10.38         20     4.5   449     CRMSSC  
     SURFACE . . . . . . . .   15.41         30     6.5   461     CRMSSC  
     BURIED  . . . . . . . .   11.77         37     8.2   453     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   13.62        383    20.4  1878     CRMSALL 
     SECONDARY STRUCTURE . .    9.78        112    12.7   881     CRMSALL 
     SURFACE . . . . . . . .   15.99        174    18.4   945     CRMSALL 
     BURIED  . . . . . . . .   11.27        209    22.4   933     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.014      1.000       0.500     79    32.8   241     ERRCA  
     SECONDARY STRUCTURE . .    9.049      1.000       0.500     23    21.3   108     ERRCA  
     SURFACE . . . . . . . .   14.497      1.000       0.500     36    29.8   121     ERRCA  
     BURIED  . . . . . . . .    9.935      1.000       0.500     43    35.8   120     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.069      1.000       0.500    383    32.5  1180     ERRMC  
     SECONDARY STRUCTURE . .    9.146      1.000       0.500    112    21.0   533     ERRMC  
     SURFACE . . . . . . . .   14.431      1.000       0.500    174    29.3   593     ERRMC  
     BURIED  . . . . . . . .   10.103      1.000       0.500    209    35.6   587     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.197      1.000       0.500     67     7.3   914     ERRSC  
     RELIABLE SIDE CHAINS  .   12.197      1.000       0.500     67     8.8   764     ERRSC  
     SECONDARY STRUCTURE . .    9.950      1.000       0.500     20     4.5   449     ERRSC  
     SURFACE . . . . . . . .   13.978      1.000       0.500     30     6.5   461     ERRSC  
     BURIED  . . . . . . . .   10.753      1.000       0.500     37     8.2   453     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.069      1.000       0.500    383    20.4  1878     ERRALL 
     SECONDARY STRUCTURE . .    9.146      1.000       0.500    112    12.7   881     ERRALL 
     SURFACE . . . . . . . .   14.431      1.000       0.500    174    18.4   945     ERRALL 
     BURIED  . . . . . . . .   10.103      1.000       0.500    209    22.4   933     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         2         3         6        34      79     241   DISTCA 
CA  (P)      0.00      0.83      1.24      2.49     14.11             241   DISTCA 
CA  (RMS)    0.00      1.12      1.71      3.31      7.06                   DISTCA 
 
ALL (N)         1         6         9        29       172     383    1878   DISTALL 
ALL (P)      0.05      0.32      0.48      1.54      9.16            1878   DISTALL 
ALL (RMS)    0.89      1.31      1.85      3.55      7.34                   DISTALL 
 
 
 
 
END of the results output 
