 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 62 , MODEL 62 , TARGET 241 
#          The number of residues possible to evaluate: 62 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     2     V     C     C             1.00 
 SSP     3     S     C     C             1.00 
 SSP     4     A     H     H             1.00 
 SSP     5     E     H     H             1.00 
 SSP     6     E     H     H             1.00 
 SSP     7     I     H     H             1.00 
 SSP     8     K     H     H             1.00 
 SSP     9     K     H     H             1.00 
 SSP    10     H     H     H             1.00 
 SSP    11     E     H     H             1.00 
 SSP    12     E     H     H             1.00 
 SSP    13     K     H     H             1.00 
 SSP    14     W     H     C             1.00 
 SSP    15     N     H     C             1.00 
 SSP    16     K     H     C             1.00 
 SSP    17     Y     H     C             1.00 
 SSP    18     Y     H     C             1.00 
 SSP    19     G     C     C             1.00 
 SSP    20     V     C     C             1.00 
 SSP    21     N     C     C             1.00 
 SSP    22     A     H     H             1.00 
 SSP    23     F     H     H             1.00 
 SSP    24     N     H     H             1.00 
 SSP    25     L     C     C             1.00 
 SSP    26     P     C     C             1.00 
 SSP    27     K     C     C             1.00 
 SSP    28     E     C     C             1.00 
 SSP    29     L     C     C             1.00 
 SSP    30     F     E     H             1.00 
 SSP    31     S     E     H             1.00 
 SSP    32     K     E     H             1.00 
 SSP    33     V     C     H             1.00 
 SSP    34     D     C     H             1.00 
 SSP    35     E     C     H             1.00 
 SSP    36     K     C     H             1.00 
 SSP    37     D     H     H             1.00 
 SSP    38     R     H     C             1.00 
 SSP    39     Q     H     C             1.00 
 SSP    40     K     C     C             1.00 
 SSP  BREAK 
 SSP    68     L     E     C             1.00 
 SSP    69     T     E     C             1.00 
 SSP    70     N     C     H             1.00 
 SSP    71     R     H     H             1.00 
 SSP    72     H     H     H             1.00 
 SSP    73     I     H     H             1.00 
 SSP    74     A     H     H             1.00 
 SSP    75     K     H     H             1.00 
 SSP    76     F     H     H             1.00 
 SSP    77     A     H     H             1.00 
 SSP    78     N     C     H             1.00 
 SSP  BREAK 
 SSP   106     E     E     H             1.00 
 SSP   107     V     E     H             1.00 
 SSP   108     K     E     H             1.00 
 SSP   109     E     E     H             1.00 
 SSP   110     I     E     H             1.00 
 SSP   111     L     E     H             1.00 
 SSP   112     Q     C     H             1.00 
 SSP   113     E     C     C             1.00 
 SSP   114     P     C     C             1.00 
 SSP   115     F     C     C             1.00 
 SSP   116     G     C     C             1.00 
 SSP   117     A     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              59.7      75.0      0.0     69.6     25.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        65.2      91.4      0.0     64.5     25.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            7              57.1              28.6 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      62    100.0     59.7 
 
 BIN  0.00 - 1.00      1.00      62    100.0     59.7 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          57              57            57            241 
 ALL CONTACTS (< 8.0A)     175             155           175           1230 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       175        124   70.86   80.00   10.08       0     0.00         155      1230  |   1-9999 
 RES CONTACTS       146        120   82.19   85.71   20.80       0     0.00         140       577  |   1-4    
 RES CONTACTS         8          3   37.50   50.00    3.75       0     0.00           6        80  |   5-8    
 RES CONTACTS        21          1    4.76   11.11    0.17       0     0.00           9       573  |   9-9999 
 
 
 
# WARNING! TARGET 1878 atoms, MODEL 1688 atoms, 1673 common with TARGET 
           Number of atoms possible to evaluate: 303 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    64.70           65.3   118    24.6   480     ARMSMC  
     SECONDARY STRUCTURE . .    67.74           64.1    64    29.6   216     ARMSMC  
     SURFACE . . . . . . . .    56.94           69.3    75    31.2   240     ARMSMC  
     BURIED  . . . . . . . .    76.37           58.1    43    17.9   240     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   204     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   187     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    94     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   103     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   158     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   113     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    72     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    83     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    75     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    46     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    27     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    29     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    29     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    2 - 40   39   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     27 - 40       3.38    24.71 
  LCS LOCAL_SCORE:             33.46 
 
 FRAGMENT  2   68 - 78   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     68 - 78       3.09     3.09 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  106 - 117  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    106 - 117      4.94     4.94 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    2 - 40   39   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13      2 - 14       0.49    26.27 
  LCS LOCAL_SCORE:             26.69 
 
 FRAGMENT  2   68 - 78   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     69 - 78       1.78     3.64 
  LCS LOCAL_SCORE:             85.95 
 
 FRAGMENT  3  106 - 117  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    112 - 117      1.94     8.83 
  LCS LOCAL_SCORE:             40.97 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    2 - 40   39   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13      2 - 14       0.49    26.27 
  LCS LOCAL_SCORE:             22.16 
 
 FRAGMENT  2   68 - 78   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     70 - 78       0.99     4.37 
  LCS LOCAL_SCORE:             73.55 
 
 FRAGMENT  3  106 - 117  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    111 - 114      0.54     9.15 
  LONGEST_CONTINUOUS_SEGMENT     4    113 - 116      0.67    10.37 
  LONGEST_CONTINUOUS_SEGMENT     4    114 - 117      0.67     8.29 
  LCS LOCAL_SCORE:             29.86 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       2       V    13   13   13       C        1   5   5   5   5   5   5   5   5   5   6   6   6   6   6   6   7   7   7   7  
 LCS       3       S    13   13   13       C        4   5   5   5   5   5   5   5   5   5   6   6   6   6   6   6   7   7   7   7  
 LCS       4       A    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   6   6   6   6   6   7   7   8   9  
 LCS       5       E    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   6   6   7   7   8   9   9   9   9  
 LCS       6       E    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   6   6   7   7   8   9   9   9   9  
 LCS       7       I    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   6   6   6   7   8   9   9   9   9  
 LCS       8       K    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS       9       K    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      10       H    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      11       E    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      12       E    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      13       K    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   6   7   7   8   8   9   9   9   9  
 LCS      14       W    13   13   13       H        4   5   5   5   5   5   5   5   5   5   6   6   6   6   7   8   8   8   9   9  
 LCS      15       N     4   12   12       H        1   1   1   1   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      16       K     4   12   12       H        1   1   1   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      17       Y     5   12   12       H        1   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      18       Y     9   12   12       H        1   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      19       G     9   12   12       C        1   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      20       V     9   12   12       C        2   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      21       N     9   12   12       C        2   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      22       A     9   12   12       H        2   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      23       F     9   12   12       H        2   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      24       N     9   12   12       H        2   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      25       L     9   12   12       C        2   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      26       P     9   12   12       C        1   2   3   3   4   4   4   4   4   5   5   5   5   5   6   7   7   7   7   7  
 LCS      27       K     4    5   14       C        1   1   1   2   2   3   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      28       E     4    5   14       C        1   1   1   2   2   3   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      29       L     4    5   14       C        1   1   1   2   2   3   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      30       F     4    5   14       E        1   1   1   2   2   3   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      31       S     3    5   14       E        1   1   1   2   2   4   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      32       K     3    4   14       E        1   1   1   1   1   2   3   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      33       V     3    8   14       C        1   1   1   2   2   4   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      34       D     7    8   14       C        2   2   2   2   2   4   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      35       E     7    8   14       C        2   2   2   2   2   2   4   4   5   5   5   7   7   7   8   8   9   9   9   9  
 LCS      36       K     7    8   14       C        2   2   2   2   2   2   3   4   5   5   5   7   7   7   8   8   9   9   9   9  
 LCS      37       D     7    8   14       H        2   2   2   2   2   2   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      38       R     7    8   14       H        2   2   2   2   2   3   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      39       Q     7    8   14       H        2   2   2   2   2   4   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      40       K     7    8   14       C        2   2   2   2   2   2   4   4   5   5   6   7   7   7   8   8   9   9   9   9  
 LCS      41       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      42       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      43       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      44       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      46       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      47       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      48       N     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      49       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      50       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      51       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      52       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      53       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      54       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      55       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      56       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      57       A     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      58       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      59       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      60       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      62       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      63       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      64       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      65       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      66       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      67       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       L     4    4   11       E        1   1   1   1   1   1   1   1   2   2   2   4   4   4   4   5   5   7   7   7  
 LCS      69       T     4   10   11       E        1   1   2   2   2   3   4   4   4   4   4   4   6   6   6   6   7   7   7   7  
 LCS      70       N     9   10   11       C        2   2   3   3   3   3   4   4   4   5   5   5   6   6   6   7   7   7   7   7  
 LCS      71       R     9   10   11       H        2   2   3   3   3   3   4   4   4   4   6   6   6   6   6   7   7   7   7   7  
 LCS      72       H     9   10   11       H        2   2   3   3   3   3   4   4   4   5   6   6   6   6   6   7   7   7   7   7  
 LCS      73       I     9   10   11       H        2   2   3   3   3   3   4   4   4   4   4   4   4   5   5   7   7   7   7   7  
 LCS      74       A     9   10   11       H        2   2   3   3   3   3   4   4   4   4   4   4   4   4   6   7   7   7   7   7  
 LCS      75       K     9   10   11       H        2   2   3   3   3   3   4   4   4   4   4   4   4   4   4   5   5   6   7   7  
 LCS      76       F     9   10   11       H        2   2   3   3   3   3   4   4   4   4   4   4   4   4   4   5   5   6   7   7  
 LCS      77       A     9   10   11       H        1   2   3   3   3   3   4   4   4   4   4   4   4   4   4   5   5   6   7   7  
 LCS      78       N     9   10   11       C        1   2   3   3   3   3   4   4   4   4   4   4   4   4   4   5   5   7   7   7  
 LCS      79       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      80       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      81       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      82       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      83       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      84       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      85       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      86       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      87       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      88       P     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      89       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      90       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      91       N     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      92       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      93       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      94       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      95       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      96       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      97       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      98       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      99       E     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     100       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     101       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     102       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     103       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     104       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     105       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     106       E     3    3   12       E        1   1   1   1   1   1   2   2   2   3   3   3   3   4   4   4   8   9   9   9  
 LCS     107       V     3    4   12       E        1   1   1   1   1   1   2   2   2   3   3   3   4   4   4   4   4   5   5   9  
 LCS     108       K     3    4   12       E        1   1   1   1   1   1   2   2   2   3   3   3   4   4   4   4   4   5   5   5  
 LCS     109       E     3    4   12       E        1   1   1   1   1   1   2   2   2   3   3   7   7   7   8   8   8   9   9   9  
 LCS     110       I     3    4   12       E        1   1   1   1   1   2   2   2   3   4   6   7   7   7   8   8   9   9   9   9  
 LCS     111       L     4    4   12       E        1   1   1   1   1   2   2   2   4   4   6   7   7   7   8   8   9   9   9   9  
 LCS     112       Q     4    6   12       C        1   1   1   2   2   4   4   4   4   5   6   7   7   7   8   8   9   9   9   9  
 LCS     113       E     4    6   12       C        1   1   1   2   2   4   4   4   4   5   6   7   7   7   8   8   9   9   9   9  
 LCS     114       P     4    6   12       C        1   1   2   2   2   4   4   4   4   5   6   7   7   7   8   8   9   9   9   9  
 LCS     115       F     4    6   12       C        1   1   2   2   2   4   4   4   4   5   6   7   7   7   8   8   9   9   9   9  
 LCS     116       G     4    6   12       C        1   1   2   2   2   4   4   4   4   5   6   7   7   7   8   8   9   9   9   9  
 LCS     117       A     4    6   12       C        0   1   2   2   2   4   4   4   4   5   6   7   7   7   8   8   9   9   9   9  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.81 
 
 NUMBER_OF_CA_Tg:  241      NUMBER_OF_CA_Pr:   62      PERCENT_OF_CA:  25.73  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      11      13      13      13      13      13      13      13      14      14      16      17      19      19      20      21      22      23      23      24  
 GDT PERCENT_OF_CA_Pr   17.74   20.97   20.97   20.97   20.97   20.97   20.97   20.97   22.58   22.58   25.81   27.42   30.65   30.65   32.26   33.87   35.48   37.10   37.10   38.71 
 GDT PERCENT_OF_CA_Tg    4.56    5.39    5.39    5.39    5.39    5.39    5.39    5.39    5.81    5.81    6.64    7.05    7.88    7.88    8.30    8.71    9.13    9.54    9.54    9.96 
 GDT FRAGMENT: Beg-End   3-14    2-14    2-14    2-14    2-14    2-14    2-14    2-14    8-40    2-72    8-40   31-117  31-117  31-117  30-117  27-117  27-117   5-40   27-117  27-117 
 GDT RMS_LOCAL           0.38    0.49    0.49    0.49    0.49    0.49    0.49    0.49    3.44    2.21    3.98    4.04    4.44    4.44    4.67    5.05    5.30    5.60    5.52    5.78 
 GDT RMS_ALL_CA         26.45   26.45   26.45   26.45   26.45   26.45   26.45   26.45   22.36   24.54   22.36   22.80   23.30   23.30   23.00   22.38   22.20   23.77   22.47   22.69 
 
 
 TEST (CA)  RMS =  19.04               (Number of atoms:   62) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   19.04         62    25.7   241     CRMSCA  
     CRN = ALL/NP  . . . . .    0.3071                            CRMSCA  
     SECONDARY STRUCTURE . .   17.70         33    30.6   108     CRMSCA  
     SURFACE . . . . . . . .   19.85         40    33.1   121     CRMSCA  
     BURIED  . . . . . . . .   17.46         22    18.3   120     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   18.87        303    25.7  1180     CRMSMC  
     SECONDARY STRUCTURE . .   17.71        162    30.4   533     CRMSMC  
     SURFACE . . . . . . . .   19.59        194    32.7   593     CRMSMC  
     BURIED  . . . . . . . .   17.51        109    18.6   587     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   18.62         55     6.0   914     CRMSSC  
     RELIABLE SIDE CHAINS  .   18.62         55     7.2   764     CRMSSC  
     SECONDARY STRUCTURE . .   17.66         30     6.7   449     CRMSSC  
     SURFACE . . . . . . . .   19.36         34     7.4   461     CRMSSC  
     BURIED  . . . . . . . .   17.37         21     4.6   453     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   18.87        303    16.1  1878     CRMSALL 
     SECONDARY STRUCTURE . .   17.71        162    18.4   881     CRMSALL 
     SURFACE . . . . . . . .   19.59        194    20.5   945     CRMSALL 
     BURIED  . . . . . . . .   17.51        109    11.7   933     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.979      1.000       0.500     62    25.7   241     ERRCA  
     SECONDARY STRUCTURE . .   16.909      1.000       0.500     33    30.6   108     ERRCA  
     SURFACE . . . . . . . .   18.648      1.000       0.500     40    33.1   121     ERRCA  
     BURIED  . . . . . . . .   16.762      1.000       0.500     22    18.3   120     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.821      1.000       0.500    303    25.7  1180     ERRMC  
     SECONDARY STRUCTURE . .   16.911      1.000       0.500    162    30.4   533     ERRMC  
     SURFACE . . . . . . . .   18.407      1.000       0.500    194    32.7   593     ERRMC  
     BURIED  . . . . . . . .   16.776      1.000       0.500    109    18.6   587     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.633      1.000       0.500     55     6.0   914     ERRSC  
     RELIABLE SIDE CHAINS  .   17.633      1.000       0.500     55     7.2   764     ERRSC  
     SECONDARY STRUCTURE . .   16.828      1.000       0.500     30     6.7   449     ERRSC  
     SURFACE . . . . . . . .   18.237      1.000       0.500     34     7.4   461     ERRSC  
     BURIED  . . . . . . . .   16.655      1.000       0.500     21     4.6   453     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.821      1.000       0.500    303    16.1  1878     ERRALL 
     SECONDARY STRUCTURE . .   16.911      1.000       0.500    162    18.4   881     ERRALL 
     SURFACE . . . . . . . .   18.407      1.000       0.500    194    20.5   945     ERRALL 
     BURIED  . . . . . . . .   16.776      1.000       0.500    109    11.7   933     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         0         2      62     241   DISTCA 
CA  (P)      0.00      0.00      0.00      0.00      0.83             241   DISTCA 
CA  (RMS)    0.00      0.00      0.00      0.00      9.76                   DISTCA 
 
ALL (N)         0         0         0         0         9     303    1878   DISTALL 
ALL (P)      0.00      0.00      0.00      0.00      0.48            1878   DISTALL 
ALL (RMS)    0.00      0.00      0.00      0.00      9.44                   DISTALL 
 
 
 
 
END of the results output 
