 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 66 
 
# WARNING! TARGET 515 atoms, MODEL 174 atoms, 153 common with TARGET 
           Number of atoms possible to evaluate: 99 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   130     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    84     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    94     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    36     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    51     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    36     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    37     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    27     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    10     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     4     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     2     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 66   66   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22     37 - 58       4.88    13.79 
  LONGEST_CONTINUOUS_SEGMENT    22     38 - 59       4.90    13.79 
  LONGEST_CONTINUOUS_SEGMENT    22     39 - 60       4.86    13.73 
  LONGEST_CONTINUOUS_SEGMENT    22     40 - 61       4.95    13.74 
  LCS LOCAL_SCORE:             28.31 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 66   66   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     11 - 18       1.65    14.58 
  LCS LOCAL_SCORE:              9.50 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 66   66   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     12 - 17       0.73    15.72 
  LONGEST_CONTINUOUS_SEGMENT     6     42 - 47       0.80    13.76 
  LCS LOCAL_SCORE:              6.89 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       E     4    4   19       -        4   6   7   7  10  10  10  12  13  18  24  27  28  31  34  40  42  43  43  54  
 LCS       2       T     4    4   19       -        4   6   6   6   6   9  10  16  19  22  27  30  34  36  39  40  42  51  57  66  
 LCS       3       V     4    6   19       -        4   6   6  10  10  12  16  21  24  27  30  37  37  43  46  50  56  60  63  66  
 LCS       4       E     5    6   19       -        4   7   9  10  10  12  16  21  24  28  33  37  37  43  46  50  56  60  63  66  
 LCS       5       S     5    6   19       -        4   7   9  10  10  12  16  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS       6       C     5    6   19       -        4   7   9  10  10  12  16  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS       7       L     5    6   19       -        4   7   9  10  10  12  15  19  24  27  30  34  37  37  45  50  54  60  63  66  
 LCS       8       A     5    6   19       -        4   4   9  10  10  12  16  21  24  27  30  34  37  37  42  48  54  60  62  66  
 LCS       9       K     4    5   19       -        4   4   6   7   7  12  16  21  24  27  30  34  37  43  46  50  56  60  63  66  
 LCS      10       P     4    5   19       -        4   4   6   7   7  12  16  21  24  27  30  34  37  37  42  46  54  60  63  66  
 LCS      11       H     4    8   19       -        4   4   6   7  10  15  16  21  24  27  30  34  37  37  39  40  46  51  59  62  
 LCS      12       T     6    8   19       -        4   9  10  13  13  15  16  18  24  25  28  34  37  37  39  40  42  45  51  57  
 LCS      13       E     6    8   19       -        4   9  10  13  13  15  16  21  24  27  30  34  37  37  39  40  46  50  57  62  
 LCS      14       N     6    8   19       -        4   9  10  13  13  15  16  21  24  27  30  34  37  37  42  46  54  60  63  66  
 LCS      15       S     6    8   19       -        4   9  10  13  13  15  16  21  24  27  30  34  37  43  46  50  56  60  63  66  
 LCS      16       F     6    8   19       -        4   9  10  13  13  15  16  21  24  28  33  37  39  43  46  50  56  60  63  66  
 LCS      17       T     6    8   19       -        4   9  10  13  15  16  19  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      18       N     5    8   19       -        4   7   7  13  13  16  19  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      19       V     5    7   19       -        7   7   9  12  15  16  19  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      20       W     5    7   19       -        7   7   9  12  15  16  19  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      21       K     5    7   19       -        7   7   9  12  15  16  19  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      22       D     5    7   17       -        7   7   9  12  15  16  19  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      23       D     5    7   17       -        4   6   7   7  12  13  16  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      24       K     5    7   17       -        4   6   7   7   9  13  16  19  25  28  33  37  39  43  46  50  56  60  63  66  
 LCS      25       T     5    7   17       -        4   6   7   7   9  15  19  21  25  28  33  37  39  43  46  50  56  60  63  66  
 LCS      26       L     4    6   17       -        4   4   6  12  16  19  22  25  27  28  28  31  34  34  42  50  56  60  63  66  
 LCS      27       D     4    6   17       -        4   4  10  12  15  18  22  25  27  28  28  31  34  34  40  43  51  57  62  66  
 LCS      28       R     4    6   17       -        4   4   6   9   9   9  12  16  19  22  25  30  31  34  39  43  48  53  60  65  
 LCS      29       Y     4    6   17       -        4   4   6   9   9  10  12  13  18  22  25  28  30  34  40  43  50  60  63  66  
 LCS      30       A     3    6   17       -        4   4   6   9   9   9  12  13  13  16  18  28  28  31  40  48  56  60  63  66  
 LCS      31       N     3    6   11       -        4   4   6   9   9   9  12  13  13  16  25  28  37  43  46  50  56  60  63  66  
 LCS      32       Y     3    4   11       -        4   4  10  13  13  15  16  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      33       E     3    6   11       -        7   7  10  13  15  16  19  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      34       G     5    6   11       -        4   7   7   7   9  12  16  21  24  27  33  37  39  40  45  50  54  59  60  66  
 LCS      35       C     5    6   13       -        4   7   9  10  10  12  19  19  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      36       L     5    6   13       -        4   7   7   7  15  16  19  19  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      37       W     5    6   22       -        4   7   7   7   7  12  13  18  21  24  28  34  39  42  45  50  53  57  62  66  
 LCS      38       N     5    6   22       -        4   7   7   7   7  12  12  16  19  22  27  34  39  42  45  50  53  57  62  66  
 LCS      39       A     4    6   22       -        4   4   6   7   7  12  13  16  19  24  28  34  39  42  45  50  54  59  62  66  
 LCS      40       T     4    6   22       -        4   4   6   7  10  12  16  21  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      41       G     4    7   22       -        4   7   7  10  15  18  19  25  27  28  28  34  39  43  46  50  56  60  63  66  
 LCS      42       V     6    7   22       -        4   7  12  15  16  19  22  25  27  28  28  34  39  43  46  50  56  60  63  66  
 LCS      43       V     6    7   22       -        4  10  13  15  16  19  22  25  27  28  28  34  39  43  46  50  56  60  63  66  
 LCS      44       V     6    7   22       -        6  10  13  15  16  19  22  25  27  28  28  34  39  43  46  50  56  60  63  66  
 LCS      45       C     6    7   22       -        6  10  13  15  16  19  22  25  27  28  28  31  36  42  43  50  56  60  63  66  
 LCS      46       T     6    7   22       -        6  10  13  15  16  19  22  25  27  28  28  31  36  42  43  50  56  60  63  66  
 LCS      47       G     6    7   22       -        6  10  13  15  16  19  22  25  27  28  28  31  34  39  42  46  53  57  62  66  
 LCS      48       D     3    5   22       -        4   4   9   9  13  18  18  22  25  28  28  31  34  37  40  43  45  48  53  62  
 LCS      49       E     3    5   22       -        4   4   6   6   6   9  10  15  16  19  27  28  30  31  34  37  42  43  48  53  
 LCS      50       T     5    6   22       -        6   7  12  13  16  18  21  24  27  28  28  31  34  37  40  43  46  54  60  63  
 LCS      51       Q     5    6   22       -        6  10  13  15  16  18  21  25  27  28  28  31  34  37  40  46  51  57  62  66  
 LCS      52       C     5    6   22       -        4  10  13  15  16  19  22  25  27  28  28  31  36  42  43  50  56  60  63  66  
 LCS      53       Y     5    6   22       -        6  10  13  15  16  19  22  25  27  28  33  34  39  43  46  50  56  60  63  66  
 LCS      54       G     5    6   22       -        6  10  12  13  16  18  22  25  27  28  33  34  39  43  46  50  56  60  63  66  
 LCS      55       T     4    6   22       -        6   7  13  15  16  19  22  25  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      56       W     4    6   22       -        4   7   7  12  15  19  22  25  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      57       V     4    6   22       -        4   7   7  12  16  19  22  25  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      58       P     3    6   22       -        4   6   9  12  16  19  22  25  27  28  33  37  39  43  46  50  56  60  63  66  
 LCS      59       I     3    5   22       -        4   4   4   7   7  10  12  13  19  24  33  37  37  43  46  50  56  60  63  66  
 LCS      60       G     3    5   22       -        4   4   4   6   7  12  16  21  24  27  30  34  37  37  43  46  56  60  63  66  
 LCS      61       L     4    6   22       -        4   6   6   7  10  10  13  16  21  25  30  34  37  37  39  40  42  48  54  60  
 LCS      62       A     4    6   21       -        4   6   6   7  12  12  13  16  18  19  24  25  31  33  34  39  42  43  43  54  
 LCS      63       I     4    6   10       -        4   6   6   7   9   9   9  15  16  18  21  22  22  25  31  37  39  40  43  45  
 LCS      64       P     4    6   10       -        4   6   6   7  12  12  12  15  16  22  24  27  28  30  34  39  42  43  43  45  
 LCS      65       E     3    6   10       -        4   4   6   7   9   9  16  16  19  24  28  34  37  37  39  40  42  43  43  45  
 LCS      66       N     3    6   10       -        4   4   4   7   9   9   9  10  13  19  27  34  37  37  39  40  42  43  43  46  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   6.89 
 
 NUMBER_OF_CA_Tg:   66      NUMBER_OF_CA_Pr:   66      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       7       9      10      11      13      15      17      18      19      22      25      26      29      31      33      37      40      42      44  
 GDT PERCENT_OF_CA_Pr    7.58   10.61   13.64   15.15   16.67   19.70   22.73   25.76   27.27   28.79   33.33   37.88   39.39   43.94   46.97   50.00   56.06   60.61   63.64   66.67 
 GDT PERCENT_OF_CA_Tg    7.58   10.61   13.64   15.15   16.67   19.70   22.73   25.76   27.27   28.79   33.33   37.88   39.39   43.94   46.97   50.00   56.06   60.61   63.64   66.67 
 GDT FRAGMENT: Beg-End  19-33   44-54   43-55   42-55   43-55   26-58   26-58   26-58   26-58   25-58    4-59    3-59    5-58    4-59    4-59    3-59    3-59    3-60    3-60    3-60  
 GDT RMS_LOCAL           0.32    0.60    1.08    1.26    1.45    2.04    2.32    2.63    2.84    3.09    3.95    4.27    4.46    5.05    5.31    5.41    6.29    6.62    6.94    6.92 
 GDT RMS_ALL_CA         12.99   16.15   15.00   14.50   15.35   13.56   13.49   13.44   13.42   13.34   12.74   12.48   12.70   11.87   11.69   12.24   11.28   11.15   11.07   11.38 
 
 
 TEST (CA)  RMS =  10.62               (Number of atoms:   66) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   10.62         66   100.0    66     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1609                            CRMSCA  
     SECONDARY STRUCTURE . .    9.20         42   100.0    42     CRMSCA  
     SURFACE . . . . . . . .   11.00         48   100.0    48     CRMSCA  
     BURIED  . . . . . . . .    9.56         18   100.0    18     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   10.76         95    29.2   325     CRMSMC  
     SECONDARY STRUCTURE . .    9.51         61    29.5   207     CRMSMC  
     SURFACE . . . . . . . .   10.95         70    29.5   237     CRMSMC  
     BURIED  . . . . . . . .   10.20         25    28.4    88     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   10.82         33    13.1   251     CRMSSC  
     RELIABLE SIDE CHAINS  .   10.82         33    15.3   215     CRMSSC  
     SECONDARY STRUCTURE . .    9.97         23    13.9   165     CRMSSC  
     SURFACE . . . . . . . .   10.78         23    12.2   188     CRMSSC  
     BURIED  . . . . . . . .   10.92         10    15.9    63     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   10.69         99    19.2   515     CRMSALL 
     SECONDARY STRUCTURE . .    9.48         65    19.5   333     CRMSALL 
     SURFACE . . . . . . . .   10.93         71    18.7   380     CRMSALL 
     BURIED  . . . . . . . .   10.07         28    20.7   135     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    9.836      1.000       0.500     66   100.0    66     ERRCA  
     SECONDARY STRUCTURE . .    8.748      1.000       0.500     42   100.0    42     ERRCA  
     SURFACE . . . . . . . .   10.104      1.000       0.500     48   100.0    48     ERRCA  
     BURIED  . . . . . . . .    9.123      1.000       0.500     18   100.0    18     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    9.965      1.000       0.500     95    29.2   325     ERRMC  
     SECONDARY STRUCTURE . .    9.022      1.000       0.500     61    29.5   207     ERRMC  
     SURFACE . . . . . . . .   10.031      1.000       0.500     70    29.5   237     ERRMC  
     BURIED  . . . . . . . .    9.781      1.000       0.500     25    28.4    88     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.079      1.000       0.500     33    13.1   251     ERRSC  
     RELIABLE SIDE CHAINS  .   10.079      1.000       0.500     33    15.3   215     ERRSC  
     SECONDARY STRUCTURE . .    9.478      1.000       0.500     23    13.9   165     ERRSC  
     SURFACE . . . . . . . .    9.842      1.000       0.500     23    12.2   188     ERRSC  
     BURIED  . . . . . . . .   10.626      1.000       0.500     10    15.9    63     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    9.917      1.000       0.500     99    19.2   515     ERRALL 
     SECONDARY STRUCTURE . .    9.006      1.000       0.500     65    19.5   333     ERRALL 
     SURFACE . . . . . . . .   10.019      1.000       0.500     71    18.7   380     ERRALL 
     BURIED  . . . . . . . .    9.660      1.000       0.500     28    20.7   135     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         2         4        41      66      66   DISTCA 
CA  (P)      0.00      0.00      3.03      6.06     62.12              66   DISTCA 
CA  (RMS)    0.00      0.00      2.65      3.34      7.54                   DISTCA 
 
ALL (N)         0         0         3         7        58      99     515   DISTALL 
ALL (P)      0.00      0.00      0.58      1.36     11.26             515   DISTALL 
ALL (RMS)    0.00      0.00      2.75      3.45      7.46                   DISTALL 
 
 
 
 
END of the results output 
