 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 157 , MODEL 157 , TARGET 159 
#          The number of residues possible to evaluate: 157 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     9     M     H     C             1.00 
 SSP    10     S     H     C             1.00 
 SSP    11     G     H     C             1.00 
 SSP    12     I     H     C             1.00 
 SSP    13     A     H     C             1.00 
 SSP    14     L     H     C             1.00 
 SSP    15     S     H     C             1.00 
 SSP    16     R     H     H             1.00 
 SSP    17     L     H     H             1.00 
 SSP    18     A     H     H             1.00 
 SSP    19     Q     H     H             1.00 
 SSP    20     E     H     H             1.00 
 SSP    21     R     H     H             1.00 
 SSP    22     K     H     H             1.00 
 SSP    23     A     H     H             1.00 
 SSP    24     W     H     H             1.00 
 SSP    25     R     H     H             1.00 
 SSP    26     K     H     H             1.00 
 SSP    27     D     C     H             1.00 
 SSP    28     H     C     C             1.00 
 SSP    29     P     C     C             1.00 
 SSP    30     F     C     C             1.00 
 SSP    31     G     C     C             1.00 
 SSP    32     F     C     C             1.00 
 SSP    33     V     E     E             1.00 
 SSP    34     A     E     E             1.00 
 SSP    35     V     E     C             1.00 
 SSP    36     P     E     C             1.00 
 SSP    37     T     E     C             1.00 
 SSP    38     K     E     C             1.00 
 SSP    39     N     C     C             1.00 
 SSP    40     P     C     C             1.00 
 SSP    41     D     C     C             1.00 
 SSP    42     G     C     C             1.00 
 SSP    43     T     C     C             1.00 
 SSP    44     M     E     C             1.00 
 SSP    45     N     E     C             1.00 
 SSP    46     L     E     C             1.00 
 SSP    47     M     E     C             1.00 
 SSP    48     N     E     C             1.00 
 SSP    49     W     E     E             1.00 
 SSP    50     E     E     E             1.00 
 SSP    51     C     E     E             1.00 
 SSP    52     A     E     E             1.00 
 SSP    53     I     E     E             1.00 
 SSP    54     P     E     E             1.00 
 SSP    55     G     C     E             1.00 
 SSP    56     K     C     C             1.00 
 SSP    57     K     C     C             1.00 
 SSP    58     G     C     C             1.00 
 SSP    59     T     C     C             1.00 
 SSP    60     P     C     C             1.00 
 SSP    61     W     C     C             1.00 
 SSP    62     E     C     E             1.00 
 SSP    63     G     C     C             1.00 
 SSP    64     G     C     C             1.00 
 SSP    65     L     E     E             1.00 
 SSP    66     F     E     E             1.00 
 SSP    67     K     E     E             1.00 
 SSP    68     L     E     E             1.00 
 SSP    69     R     E     E             1.00 
 SSP    70     M     E     E             1.00 
 SSP    71     L     E     E             1.00 
 SSP    72     F     C     C             1.00 
 SSP    73     K     C     C             1.00 
 SSP    74     D     C     C             1.00 
 SSP    75     D     C     C             1.00 
 SSP    76     Y     C     C             1.00 
 SSP    77     P     C     C             1.00 
 SSP    78     S     C     C             1.00 
 SSP    79     S     C     C             1.00 
 SSP    80     P     C     C             1.00 
 SSP    81     P     C     C             1.00 
 SSP    82     K     E     E             1.00 
 SSP    83     C     E     E             1.00 
 SSP    84     K     E     E             1.00 
 SSP    85     F     E     E             1.00 
 SSP    86     E     C     C             1.00 
 SSP    87     P     C     C             1.00 
 SSP    88     P     C     C             1.00 
 SSP    89     L     C     C             1.00 
 SSP    90     F     C     C             1.00 
 SSP    91     H     C     C             1.00 
 SSP    92     P     C     C             1.00 
 SSP    93     N     C     C             1.00 
 SSP    94     V     E     E             1.00 
 SSP    95     Y     C     C             1.00 
 SSP    96     P     C     C             1.00 
 SSP    97     S     C     C             1.00 
 SSP    98     G     C     C             1.00 
 SSP    99     T     E     C             1.00 
 SSP   100     V     E     E             1.00 
 SSP   101     C     C     C             1.00 
 SSP   102     L     C     C             1.00 
 SSP   103     S     H     C             1.00 
 SSP   104     I     H     C             1.00 
 SSP   105     L     H     C             1.00 
 SSP   106     E     C     C             1.00 
 SSP   107     E     C     C             1.00 
 SSP   108     D     C     C             1.00 
 SSP   109     K     C     C             1.00 
 SSP   110     D     C     C             1.00 
 SSP   111     W     C     C             1.00 
 SSP   112     R     C     C             1.00 
 SSP   113     P     C     C             1.00 
 SSP   114     A     C     C             1.00 
 SSP   115     I     C     C             1.00 
 SSP   116     T     C     C             1.00 
 SSP   117     I     H     H             1.00 
 SSP   118     K     H     H             1.00 
 SSP   119     Q     H     H             1.00 
 SSP   120     I     H     H             1.00 
 SSP   121     L     H     H             1.00 
 SSP   122     L     H     H             1.00 
 SSP   123     G     H     H             1.00 
 SSP   124     I     H     H             1.00 
 SSP   125     Q     H     H             1.00 
 SSP   126     E     H     H             1.00 
 SSP   127     L     H     H             1.00 
 SSP   128     L     H     H             1.00 
 SSP   129     N     H     H             1.00 
 SSP   130     E     C     C             1.00 
 SSP   131     P     C     C             1.00 
 SSP   132     N     C     C             1.00 
 SSP   133     I     C     C             1.00 
 SSP   134     Q     C     C             1.00 
 SSP   135     D     C     C             1.00 
 SSP   136     P     C     C             1.00 
 SSP   137     A     C     C             1.00 
 SSP   138     Q     C     C             1.00 
 SSP   139     A     H     H             1.00 
 SSP   140     E     H     H             1.00 
 SSP   141     A     H     H             1.00 
 SSP   142     Y     H     H             1.00 
 SSP   143     T     H     H             1.00 
 SSP   144     I     H     H             1.00 
 SSP   145     Y     H     H             1.00 
 SSP   146     C     H     H             1.00 
 SSP   147     Q     H     H             1.00 
 SSP   148     N     C     C             1.00 
 SSP   149     R     H     H             1.00 
 SSP   150     V     H     H             1.00 
 SSP   151     E     H     H             1.00 
 SSP   152     Y     H     H             1.00 
 SSP   153     E     H     H             1.00 
 SSP   154     K     H     H             1.00 
 SSP   155     R     H     H             1.00 
 SSP   156     V     H     H             1.00 
 SSP   157     R     H     H             1.00 
 SSP   158     A     H     H             1.00 
 SSP   159     Q     H     H             1.00 
 SSP   160     A     H     H             1.00 
 SSP   161     K     H     H             1.00 
 SSP   162     K     H     H             1.00 
 SSP   163     F     C     C             1.00 
 SSP   164     A     C     C             1.00 
 SSP   165     P     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              85.4      82.5     67.7     95.7     98.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        85.8      91.4     78.2     84.7     98.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              80.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     157    100.0     85.4 
 
 BIN  0.00 - 1.00      1.00     157    100.0     85.4 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         157             157           157            160 
 ALL CONTACTS (< 8.0A)     728             740           728            750 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       728        643   88.32   86.89   85.73       0     0.00         740       750  |   1-9999 
 RES CONTACTS       421        400   95.01   93.90   92.17       0     0.00         426       434  |   1-4    
 RES CONTACTS        49         36   73.47   76.60   75.00       0     0.00          47        48  |   5-8    
 RES CONTACTS       258        207   80.23   77.53   77.24       0     0.00         267       268  |   9-9999 
 
 
 
# WARNING! TARGET 1282 atoms, MODEL 1318 atoms, 1282 common with TARGET 
           Number of atoms possible to evaluate: 1261 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    40.50           81.4   312    98.1   318     ARMSMC  
     SECONDARY STRUCTURE . .    41.03           85.3   163    99.4   164     ARMSMC  
     SURFACE . . . . . . . .    49.00           72.7   176    97.2   181     ARMSMC  
     BURIED  . . . . . . . .    25.60           92.6   136    99.3   137     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    76.88           48.5   136    97.8   139     ARMSSC1 
     RELIABLE SIDE CHAINS  .    77.96           46.9   130    97.7   133     ARMSSC1 
     SECONDARY STRUCTURE . .    79.56           39.4    71   100.0    71     ARMSSC1 
     SURFACE . . . . . . . .    83.62           41.0    78    97.5    80     ARMSSC1 
     BURIED  . . . . . . . .    66.74           58.6    58    98.3    59     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    68.71           49.1   114    98.3   116     ARMSSC2 
     RELIABLE SIDE CHAINS  .    57.30           56.5    92   100.0    92     ARMSSC2 
     SECONDARY STRUCTURE . .    68.91           48.3    60   100.0    60     ARMSSC2 
     SURFACE . . . . . . . .    61.81           45.5    66    97.1    68     ARMSSC2 
     BURIED  . . . . . . . .    77.20           54.2    48   100.0    48     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    93.06           40.9    44   100.0    44     ARMSSC3 
     RELIABLE SIDE CHAINS  .    83.23           45.9    37   100.0    37     ARMSSC3 
     SECONDARY STRUCTURE . .   101.29           31.2    32   100.0    32     ARMSSC3 
     SURFACE . . . . . . . .    91.95           44.4    36   100.0    36     ARMSSC3 
     BURIED  . . . . . . . .    97.91           25.0     8   100.0     8     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    72.10           54.5    22   100.0    22     ARMSSC4 
     RELIABLE SIDE CHAINS  .    72.10           54.5    22   100.0    22     ARMSSC4 
     SECONDARY STRUCTURE . .    75.91           47.1    17   100.0    17     ARMSSC4 
     SURFACE . . . . . . . .    69.10           60.0    20   100.0    20     ARMSSC4 
     BURIED  . . . . . . . .    97.14            0.0     2   100.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    9 - 165  157  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   157      9 - 165      2.60     2.60 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    9 - 165  157  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT   153     11 - 163      1.99     2.62 
  LONGEST_CONTINUOUS_SEGMENT   153     12 - 164      1.96     2.63 
  LCS LOCAL_SCORE:             96.23 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    9 - 165  157  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    76     89 - 164      0.98     2.92 
  LCS LOCAL_SCORE:             35.56 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       9       M     3    3  157       H        1   1   1   1   1   2   3   3   4  10  31  33  38  53  67  76  79  85  90  93  
 LCS      10       S     3    3  157       H        1   1   1   1   1  18  24  30  45  49  56  72  83  91  95  96  97  97  97  97  
 LCS      11       G     3  153  157       H        1  13  23  32  48  78  85  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      12       I    11  153  157       H        4   5   6  24  66  80  85  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      13       A    11  153  157       H        1   1   5   7   8  10  36  76  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      14       L    11  153  157       H        1   5  40  66  78  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      15       S    11  153  157       H        1  25  56  68  78  82  86  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      16       R    11  153  157       H        4   5   6  21  65  80  85  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      17       L    11  153  157       H        4   5   6  55  76  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      18       A    11  153  157       H        4   5   8  55  77  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      19       Q    11  153  157       H       10  33  58  66  78  82  86  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      20       E    11  153  157       H        4   5   6  13  51  80  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      21       R    11  153  157       H        4   5  12  55  72  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      22       K    11  153  157       H        4   5   6   8  37  80  85  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      23       A    12  153  157       H       15  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      24       W    12  153  157       H       12  36  68  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      25       R    12  153  157       H        3  34  67  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      26       K    12  153  157       H       13  36  67  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      27       D    12  153  157       C       15  36  67  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      28       H    12  153  157       C       15  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      29       P    12  153  157       C        5  28  63  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      30       F    12  153  157       C        6  20  42  67  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      31       G    12  153  157       C        3  20  45  71  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      32       F    12  153  157       C        8  45  68  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      33       V    12  153  157       E        4  41  68  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      34       A    12  153  157       E       21  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      35       V    12  153  157       E       19  53  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      36       P     5  153  157       E        0  10  15  65  73  81  86  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      37       T     4  153  157       E        1  12  18  30  71  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      38       K     4  153  157       E        1   1  18  31  52  80  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      39       N     4  153  157       C        4  13  26  51  75  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      40       P     4  153  157       C        1   1   2   3  52  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      41       D     4  153  157       C        1   1  67  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      42       G     3  153  157       C        0   1   2  21  28  59  79  86  91  94  96  96  96  96  96  96  97  97  97  97  
 LCS      43       T     4  153  157       C        1   2   2   4  35  59  79  86  91  94  96  96  96  96  96  96  97  97  97  97  
 LCS      44       M     4  153  157       E        1   2   3   4  50  73  79  86  91  95  96  96  96  96  96  96  97  97  97  97  
 LCS      45       N    43  153  157       E        1   7  23  58  78  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      46       L    60  153  157       E        1  26  53  66  77  82  86  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      47       M    61  153  157       E       13  48  68  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      48       N    61  153  157       E       23  53  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      49       W    61  153  157       E       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      50       E    61  153  157       E       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      51       C    61  153  157       E       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      52       A    61  153  157       E       25  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      53       I    61  153  157       E       25  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      54       P    61  153  157       E       25  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      55       G    61  153  157       C       22  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      56       K    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      57       K    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      58       G    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      59       T    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      60       P    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      61       W    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      62       E    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      63       G    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      64       G    61  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      65       L    61  153  157       E       25  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      66       F    61  153  157       E       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      67       K    61  153  157       E       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      68       L    61  153  157       E       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      69       R    61  153  157       E       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      70       M    61  153  157       E       21  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      71       L    61  153  157       E       18  51  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      72       F    61  153  157       C       23  53  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      73       K    61  153  157       C       14  42  66  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      74       D    61  153  157       C       13  42  67  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      75       D    61  153  157       C       23  53  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      76       Y    61  153  157       C       23  53  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      77       P    61  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      78       S    61  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      79       S    61  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      80       P    61  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      81       P    61  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      82       K    61  153  157       E       20  52  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      83       C    61  153  157       E       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      84       K    61  153  157       E       24  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      85       F    61  153  157       E       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      86       E    61  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      87       P    61  153  157       C        1  17  39  71  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      88       P    61  153  157       C        1   3   3   3  70  81  86  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      89       L    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      90       F    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      91       H    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      92       P    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      93       N    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      94       V    76  153  157       E       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      95       Y    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      96       P    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      97       S    76  153  157       C       17  55  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      98       G    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS      99       T    76  153  157       E       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     100       V    76  153  157       E       24  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     101       C    76  153  157       C       12  53  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     102       L    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     103       S    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     104       I    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     105       L    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     106       E    76  153  157       C       10  47  67  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     107       E    76  153  157       C        2  19  55  73  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     108       D    76  153  157       C        1   3  15  28  76  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     109       K    76  153  157       C        1   3  11  68  76  81  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     110       D    76  153  157       C        9  40  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     111       W    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     112       R    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     113       P    76  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     114       A    76  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     115       I    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     116       T    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     117       I    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     118       K    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     119       Q    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     120       I    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     121       L    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     122       L    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     123       G    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     124       I    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     125       Q    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     126       E    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     127       L    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     128       L    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     129       N    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     130       E    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     131       P    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     132       N    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     133       I    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     134       Q    76  153  157       C       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     135       D    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     136       P    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     137       A    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     138       Q    76  153  157       C       25  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     139       A    76  153  157       H       25  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     140       E    76  153  157       H       24  55  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     141       A    76  153  157       H       24  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     142       Y    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     143       T    76  153  157       H       26  55  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     144       I    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     145       Y    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     146       C    76  153  157       H       15  50  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     147       Q    76  153  157       H       25  54  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     148       N    76  153  157       C       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     149       R    76  153  157       H       18  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     150       V    76  153  157       H       13  55  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     151       E    76  153  157       H       18  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     152       Y    76  153  157       H       26  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     153       E    76  153  157       H       17  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     154       K    76  153  157       H       15  51  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     155       R    76  153  157       H       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     156       V    76  153  157       H       23  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     157       R    76  153  157       H       15  50  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     158       A    76  153  157       H       13  38  67  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     159       Q    76  153  157       H       11  45  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     160       A    76  153  157       H       18  56  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     161       K    76  153  157       H       17  45  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     162       K    76  153  157       H       17  42  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     163       F    76  153  157       C       18  55  69  76  78  82  87  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     164       A    76  153  157       C        2  23  48  65  76  81  86  91  93  95  96  96  96  96  96  96  97  97  97  97  
 LCS     165       P     3  152  157       C        1   1   1   5  44  58  69  80  88  92  95  96  96  96  96  96  97  97  97  97  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  34.24 
 
 NUMBER_OF_CA_Tg:  160      NUMBER_OF_CA_Pr:  157      PERCENT_OF_CA:  98.12  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      43      90     111     123     126     132     140     146     150     152     154     155     155     155     155     155     156     156     156     156  
 GDT PERCENT_OF_CA_Pr   27.39   57.32   70.70   78.34   80.25   84.08   89.17   92.99   95.54   96.82   98.09   98.73   98.73   98.73   98.73   98.73   99.36   99.36   99.36   99.36 
 GDT PERCENT_OF_CA_Tg   26.88   56.25   69.38   76.88   78.75   82.50   87.50   91.25   93.75   95.00   96.25   96.88   96.88   96.88   96.88   96.88   97.50   97.50   97.50   97.50 
 GDT FRAGMENT: Beg-End  56-148  23-160  23-163  23-163  15-163  15-163  14-163  14-164  11-164  11-164  11-164  11-165  11-165  11-165  11-165  11-165  10-165  10-165  10-165  10-165 
 GDT RMS_LOCAL           0.30    0.64    0.83    0.99    1.06    1.22    1.48    1.63    1.78    1.88    2.00    2.08    2.08    2.08    2.08    2.08    2.25    2.25    2.25    2.25 
 GDT RMS_ALL_CA          2.82    2.66    2.64    2.62    2.63    2.64    2.65    2.63    2.62    2.62    2.62    2.62    2.62    2.62    2.62    2.62    2.61    2.61    2.61    2.61 
 
 
 TEST (CA)  RMS =   2.60               (Number of atoms:  157) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    2.60        157    98.1   160     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0166                            CRMSCA  
     SECONDARY STRUCTURE . .    3.00         82   100.0    82     CRMSCA  
     SURFACE . . . . . . . .    3.19         89    97.8    91     CRMSCA  
     BURIED  . . . . . . . .    1.50         68    98.6    69     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    2.62        776    98.2   790     CRMSMC  
     SECONDARY STRUCTURE . .    2.97        408   100.0   408     CRMSMC  
     SURFACE . . . . . . . .    3.19        440    97.8   450     CRMSMC  
     BURIED  . . . . . . . .    1.57        336    98.8   340     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    4.18        633    98.4   643     CRMSSC  
     RELIABLE SIDE CHAINS  .    4.20        559    98.9   565     CRMSSC  
     SECONDARY STRUCTURE . .    4.75        347   100.0   347     CRMSSC  
     SURFACE . . . . . . . .    4.87        355    97.8   363     CRMSSC  
     BURIED  . . . . . . . .    3.09        278    99.3   280     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    3.44       1261    98.4  1282     CRMSALL 
     SECONDARY STRUCTURE . .    3.93        675   100.0   675     CRMSALL 
     SURFACE . . . . . . . .    4.06        711    97.8   727     CRMSALL 
     BURIED  . . . . . . . .    2.42        550    99.1   555     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.705      1.000       0.500    157    98.1   160     ERRCA  
     SECONDARY STRUCTURE . .    1.902      1.000       0.500     82   100.0    82     ERRCA  
     SURFACE . . . . . . . .    2.172      1.000       0.500     89    97.8    91     ERRCA  
     BURIED  . . . . . . . .    1.094      1.000       0.500     68    98.6    69     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.256      0.991       0.511    776    98.2   790     ERRMC  
     SECONDARY STRUCTURE . .    2.121      0.993       0.504    408   100.0   408     ERRMC  
     SURFACE . . . . . . . .    2.645      0.990       0.509    440    97.8   450     ERRMC  
     BURIED  . . . . . . . .    1.746      0.993       0.513    336    98.8   340     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.978      0.793       0.725    633    98.4   643     ERRSC  
     RELIABLE SIDE CHAINS  .   13.605      0.800       0.719    559    98.9   565     ERRSC  
     SECONDARY STRUCTURE . .   13.463      0.782       0.705    347   100.0   347     ERRSC  
     SURFACE . . . . . . . .   13.511      0.760       0.696    355    97.8   363     ERRSC  
     BURIED  . . . . . . . .   14.575      0.836       0.763    278    99.3   280     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.839      0.896       0.613   1261    98.4  1282     ERRALL 
     SECONDARY STRUCTURE . .    7.791      0.888       0.605    675   100.0   675     ERRALL 
     SURFACE . . . . . . . .    7.793      0.880       0.598    711    97.8   727     ERRALL 
     BURIED  . . . . . . . .    7.899      0.917       0.633    550    99.1   555     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        78       119       125       150       155     157     160   DISTCA 
CA  (P)     48.75     74.38     78.12     93.75     96.88             160   DISTCA 
CA  (RMS)    0.64      0.98      1.07      1.81      2.10                   DISTCA 
 
ALL (N)       462       782       948      1124      1235    1261    1282   DISTALL 
ALL (P)     36.04     61.00     73.95     87.68     96.33            1282   DISTALL 
ALL (RMS)    0.67      1.06      1.41      1.97      2.78                   DISTALL 
 
 
 
 
END of the results output 
