 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 116 , MODEL 116 , TARGET 586 
#          The number of residues possible to evaluate: 116 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   423     E     H     C             1.00 
 SSP   424     A     H     H             1.00 
 SSP   425     D     H     H             1.00 
 SSP   426     A     H     H             1.00 
 SSP   427     C     H     H             1.00 
 SSP   428     L     H     H             1.00 
 SSP   429     A     H     H             1.00 
 SSP   430     A     C     H             1.00 
 SSP   431     T     C     H             1.00 
 SSP   432     E     E     H             1.00 
 SSP   433     W     E     H             1.00 
 SSP   434     C     E     H             1.00 
 SSP   435     P     E     H             1.00 
 SSP   436     A     C     H             1.00 
 SSP   437     I     C     H             1.00 
 SSP   438     H     C     H             1.00 
 SSP   439     E     C     H             1.00 
 SSP   440     Y     C     H             1.00 
 SSP   441     F     C     C             1.00 
 SSP   442     R     C     C             1.00 
 SSP   443     G     C     C             1.00 
 SSP  BREAK 
 SSP   458     F     E     C             1.00 
 SSP   459     T     E     E             1.00 
 SSP   460     M     E     E             1.00 
 SSP   461     T     E     E             1.00 
 SSP   462     R     E     E             1.00 
 SSP   463     V     E     E             1.00 
 SSP   464     N     E     C             1.00 
 SSP   465     I     E     C             1.00 
 SSP   466     I     E     C             1.00 
 SSP   467     K     C     C             1.00 
 SSP   468     G     C     C             1.00 
 SSP   469     L     C     C             1.00 
 SSP   470     G     E     H             1.00 
 SSP   471     P     E     H             1.00 
 SSP   472     V     E     H             1.00 
 SSP   473     L     E     H             1.00 
 SSP   474     Q     E     H             1.00 
 SSP   475     I     E     H             1.00 
 SSP   476     A     E     H             1.00 
 SSP   477     E     E     H             1.00 
 SSP   478     G     E     H             1.00 
 SSP   479     W     E     H             1.00 
 SSP   480     S     E     C             1.00 
 SSP   481     V     C     C             1.00 
 SSP  BREAK 
 SSP   503     W     E     C             1.00 
 SSP   504     F     E     E             1.00 
 SSP   505     A     E     C             1.00 
 SSP   506     P     E     C             1.00 
 SSP   507     R     C     C             1.00 
 SSP   508     L     C     C             1.00 
 SSP   509     T     C     C             1.00 
 SSP   510     G     C     C             1.00 
 SSP   511     K     C     C             1.00 
 SSP   512     G     H     C             1.00 
 SSP   513     P     H     C             1.00 
 SSP   514     F     H     H             1.00 
 SSP   515     T     C     H             1.00 
 SSP   516     D     C     H             1.00 
 SSP   517     V     H     H             1.00 
 SSP   518     Y     H     H             1.00 
 SSP   519     S     H     H             1.00 
 SSP   520     V     H     H             1.00 
 SSP   521     M     H     H             1.00 
 SSP   522     A     H     H             1.00 
 SSP   523     N     C     H             1.00 
 SSP   524     W     C     H             1.00 
 SSP   525     G     C     H             1.00 
 SSP   526     A     C     H             1.00 
 SSP   527     N     C     C             1.00 
 SSP   528     H     E     C             1.00 
 SSP   529     G     E     E             1.00 
 SSP   530     V     E     E             1.00 
 SSP   531     L     E     E             1.00 
 SSP   532     T     E     E             1.00 
 SSP   533     I     E     E             1.00 
 SSP   534     G     C     C             1.00 
 SSP   535     H     C     C             1.00 
 SSP   536     V     C     C             1.00 
 SSP   537     G     H     H             1.00 
 SSP   538     A     H     H             1.00 
 SSP   539     D     H     H             1.00 
 SSP   540     F     H     H             1.00 
 SSP   541     I     H     H             1.00 
 SSP   542     T     H     H             1.00 
 SSP   543     L     H     H             1.00 
 SSP   544     A     H     H             1.00 
 SSP   545     S     H     H             1.00 
 SSP   546     M     H     H             1.00 
 SSP   547     L     H     H             1.00 
 SSP   548     R     C     H             1.00 
 SSP   549     I     C     C             1.00 
 SSP   550     P     C     C             1.00 
 SSP   551     V     E     E             1.00 
 SSP   552     C     E     E             1.00 
 SSP   553     M     E     E             1.00 
 SSP   554     H     C     C             1.00 
 SSP   555     N     C     H             1.00 
 SSP   556     V     C     H             1.00 
 SSP   557     E     C     H             1.00 
 SSP   558     E     H     C             1.00 
 SSP   559     T     H     C             1.00 
 SSP   560     K     H     C             1.00 
 SSP   561     V     C     C             1.00 
 SSP   562     Y     C     C             1.00 
 SSP   563     R     C     C             1.00 
 SSP   564     P     C     H             1.00 
 SSP   565     S     H     H             1.00 
 SSP   566     A     H     H             1.00 
 SSP   567     W     H     H             1.00 
 SSP   568     A     H     H             1.00 
 SSP   569     A     H     H             1.00 
 SSP   570     H     H     H             1.00 
 SSP   571     G     C     H             1.00 
 SSP   572     M     C     H             1.00 
 SSP   573     D     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              57.8      83.3     37.8     53.5     19.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        56.0      69.6     45.9     53.3     19.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           12              66.7              16.7 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     116    100.0     57.8 
 
 BIN  0.00 - 1.00      1.00     116    100.0     57.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 95 , TARGET 0 
 
# WARNING! TARGET 2344 atoms, MODEL 4219 atoms, 2344 common with TARGET 
           Number of atoms possible to evaluate: 464 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    79.75           50.9   226    19.3  1170     ARMSMC  
     SECONDARY STRUCTURE . .    67.12           66.4   131    21.3   616     ARMSMC  
     SURFACE . . . . . . . .    76.32           52.8   180    19.2   936     ARMSMC  
     BURIED  . . . . . . . .    91.93           43.5    46    19.7   234     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  423 - 443  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    423 - 442      5.00     5.20 
  LCS LOCAL_SCORE:             94.10 
 
 FRAGMENT  2  458 - 481  24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    458 - 475      4.81     8.93 
  LCS LOCAL_SCORE:             65.97 
 
 FRAGMENT  3  503 - 573  71   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    29    528 - 556      4.99    22.65 
  LCS LOCAL_SCORE:             31.96 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  423 - 443  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    423 - 432      0.86     9.65 
  LCS LOCAL_SCORE:             36.96 
 
 FRAGMENT  2  458 - 481  24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    458 - 466      1.71    11.81 
  LCS LOCAL_SCORE:             25.00 
 
 FRAGMENT  3  503 - 573  71   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    533 - 548      1.99    21.91 
  LCS LOCAL_SCORE:             13.73 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  423 - 443  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    423 - 432      0.86     9.65 
  LCS LOCAL_SCORE:             34.24 
 
 FRAGMENT  2  458 - 481  24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    458 - 464      0.81    13.21 
  LCS LOCAL_SCORE:             18.58 
 
 FRAGMENT  3  503 - 573  71   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    536 - 548      0.50    20.81 
  LCS LOCAL_SCORE:              9.70 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     423       E    10   10   20       H        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   3   5   6   7  
 LCS     424       A    10   10   20       H        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   4  
 LCS     425       D    10   10   20       H        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   4   5  
 LCS     426       A    10   10   20       H        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   5   5   6   7  
 LCS     427       C    10   10   20       H        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   5   5   6   7  
 LCS     428       L    10   10   20       H        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   4  
 LCS     429       A    10   10   20       H        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   3   4   5   5  
 LCS     430       A    10   10   20       C        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   4   5   6   6   7  
 LCS     431       T    10   10   20       C        1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   6  
 LCS     432       E    10   10   20       E        0   0   0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   5  
 LCS     433       W     3    3   20       E        0   0   0   0   0   1   1   2   2   2   2   2   3   3   3   4   5   6   6   7  
 LCS     434       C     3    3   20       E        0   0   0   0   0   0   1   2   2   2   2   2   3   3   3   3   3   3   3   4  
 LCS     435       P     3    4   20       E        0   0   0   0   0   1   1   1   2   2   2   2   3   3   3   3   3   3   3   4  
 LCS     436       A     3    4   20       C        0   0   0   0   0   1   1   1   2   2   2   2   3   3   3   3   5   6   6   7  
 LCS     437       I     6    7   20       C        0   1   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   3   4   7  
 LCS     438       H     6    7   20       C        0   1   1   1   1   1   1   1   1   1   1   2   2   3   3   3   3   3   3   4  
 LCS     439       E     6    7   20       C        0   1   1   1   1   1   1   1   1   1   1   2   2   2   3   3   3   3   3   4  
 LCS     440       Y     6    7   20       C        0   1   1   1   1   1   1   1   1   1   2   2   3   3   3   5   6   6   6   7  
 LCS     441       F     6    7   20       C        0   1   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   3   3   7  
 LCS     442       R     6    7   20       C        0   1   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   3   3   4  
 LCS     443       G     3    7   15       C        0   0   0   1   1   1   1   1   1   2   2   2   3   3   3   3   3   3   3   4  
 LCS     444       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     445       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     446       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     447       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     448       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     449       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     450       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     451       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     452       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     453       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     454       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     455       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     456       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     457       P     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     458       F     7    9   18       E        0   1   1   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   4   5  
 LCS     459       T     7    9   18       E        0   1   1   1   1   1   1   1   1   2   2   2   2   3   3   3   4   5   7   7  
 LCS     460       M     7    9   18       E        0   1   1   1   1   2   2   2   3   3   3   4   4   5   5   5   6   6   7   7  
 LCS     461       T     7    9   18       E        0   1   1   1   1   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     462       R     7    9   18       E        0   1   1   1   1   1   1   1   1   2   2   2   2   3   3   4   4   5   5   5  
 LCS     463       V     7    9   18       E        0   1   1   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   3   4  
 LCS     464       N     7    9   18       E        0   0   1   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   3   4  
 LCS     465       I     4    9   18       E        0   0   0   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   3   3  
 LCS     466       I     4    9   18       E        0   0   0   1   1   1   1   1   1   2   2   2   2   3   3   3   3   3   3   3  
 LCS     467       K     4    7   18       C        0   0   0   0   0   1   1   1   1   2   2   2   2   3   3   3   3   3   3   3  
 LCS     468       G     3    5   18       C        0   0   0   0   0   1   1   1   1   2   2   2   2   3   3   3   3   3   3   3  
 LCS     469       L     3    5   18       C        0   0   0   0   0   1   1   1   1   2   2   2   2   3   3   3   3   3   3   3  
 LCS     470       G     3    5   18       E        0   0   0   0   0   0   1   1   1   2   2   2   2   3   3   3   3   3   3   3  
 LCS     471       P     3    5   18       E        0   0   0   0   0   1   1   1   1   2   2   2   2   3   3   3   3   3   3   4  
 LCS     472       V     3    5   18       E        0   0   0   0   0   0   1   1   1   2   2   2   2   3   3   3   3   3   3   4  
 LCS     473       L     3    3   18       E        0   0   0   0   0   0   1   1   1   2   2   3   4   5   5   5   6   6   7   7  
 LCS     474       Q     3    3   18       E        0   0   0   0   0   0   1   1   1   1   2   2   2   3   5   5   6   6   7   7  
 LCS     475       I     3    3   18       E        0   0   0   0   0   0   1   1   1   2   2   2   2   4   5   5   6   6   7   7  
 LCS     476       A     3    3   16       E        0   0   0   0   0   1   1   1   1   1   2   2   2   4   5   5   6   6   7   7  
 LCS     477       E     3    3    8       E        0   0   0   0   0   0   0   1   1   1   2   2   3   3   3   4   4   4   5   6  
 LCS     478       G     4    4    8       E        0   0   0   0   0   0   0   1   1   1   1   2   2   2   2   4   4   4   4   5  
 LCS     479       W     4    4    8       E        0   0   0   0   0   0   0   1   1   1   1   2   3   3   3   4   4   4   5   5  
 LCS     480       S     4    4    8       E        0   0   0   0   0   0   1   1   1   2   2   2   3   3   3   4   4   4   5   5  
 LCS     481       V     4    4    8       C        0   0   0   0   0   0   1   1   1   2   2   2   3   3   3   4   4   4   4   5  
 LCS     482       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     483       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     484       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     485       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     486       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     487       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     488       H     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     489       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     490       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     491       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     492       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     493       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     494       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     495       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     496       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     497       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     498       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     499       W     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     500       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     501       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     502       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     503       W     5    7   12       E        0   0   0   1   1   1   1   1   1   1   2   2   3   3   3   4   4   4   5   5  
 LCS     504       F     5    7   18       E        0   0   0   1   1   2   2   2   2   2   2   3   3   4   4   4   5   6   6   7  
 LCS     505       A     5    7   18       E        0   0   0   1   1   2   2   2   2   2   2   3   3   4   4   4   5   6   6   7  
 LCS     506       P     5    7   19       E        0   0   0   1   1   1   1   1   2   2   3   3   4   5   5   5   6   6   7   7  
 LCS     507       R     5    7   19       C        0   0   0   1   1   1   1   1   2   2   2   3   4   4   5   5   6   6   7   7  
 LCS     508       L     4    7   19       C        0   0   0   1   1   1   1   1   1   1   2   2   3   4   4   5   5   6   7   7  
 LCS     509       T     4    7   20       C        0   0   0   0   1   1   1   1   1   1   2   2   3   4   4   5   6   6   7   7  
 LCS     510       G     3    5   20       C        0   0   0   0   0   1   1   1   1   1   2   3   3   4   4   5   5   6   7   7  
 LCS     511       K     3    5   20       C        0   0   0   0   0   1   1   1   1   2   3   3   4   5   5   5   6   6   7   7  
 LCS     512       G     3    5   20       H        0   0   0   0   0   1   1   1   1   2   2   3   4   5   5   5   6   6   7   7  
 LCS     513       P     4    5   23       H        0   0   0   0   0   1   1   1   2   2   3   3   4   5   5   5   6   6   7   7  
 LCS     514       F     4    5   23       H        0   0   0   0   0   1   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     515       T     4   10   23       C        0   0   0   1   1   1   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     516       D     9   11   23       C        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     517       V     9   11   23       H        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     518       Y     9   11   23       H        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     519       S     9   11   23       H        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     520       V     9   11   23       H        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     521       M     9   11   23       H        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     522       A     9   11   23       H        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     523       N     9   11   23       C        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     524       W     9   11   26       C        1   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     525       G     3   11   26       C        0   0   0   1   1   2   2   2   2   3   3   3   3   4   4   5   5   6   7   7  
 LCS     526       A     3   11   26       C        0   0   0   0   0   1   1   2   2   2   2   3   3   4   4   5   5   6   7   7  
 LCS     527       N     3    4   26       C        0   0   0   0   0   1   1   2   2   2   2   3   3   4   4   5   5   6   7   7  
 LCS     528       H     7    9   29       E        0   1   1   1   1   2   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     529       G     7    9   29       E        0   1   1   1   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     530       V     7    9   29       E        0   1   1   1   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     531       L     7    9   29       E        0   1   1   1   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     532       T     7    9   29       E        0   1   1   2   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     533       I     7   16   29       E        0   1   1   2   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     534       G     7   16   29       C        0   1   1   2   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     535       H     4   16   29       C        0   0   1   1   1   2   2   3   3   3   4   4   4   5   5   5   6   6   7   7  
 LCS     536       V    13   16   29       C        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   6  
 LCS     537       G    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     538       A    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     539       D    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     540       F    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     541       I    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     542       T    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     543       L    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     544       A    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     545       S    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     546       M    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     547       L    13   16   29       H        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     548       R    13   16   29       C        1   2   2   2   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     549       I     3   15   29       C        0   0   0   1   2   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     550       P     4    5   29       C        0   0   0   1   1   1   2   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     551       V     4    5   29       E        0   0   0   1   1   1   2   3   3   3   4   4   4   4   4   4   5   5   5   5  
 LCS     552       C     4    6   29       E        0   0   0   1   1   1   1   2   3   3   3   3   4   4   4   4   5   5   5   5  
 LCS     553       M     4    6   29       E        0   0   0   1   1   1   1   2   3   3   3   3   4   4   4   4   5   5   5   5  
 LCS     554       H     3    6   29       C        0   0   0   0   1   1   1   1   2   3   3   4   4   4   4   4   5   5   5   5  
 LCS     555       N     3    6   29       C        0   0   0   0   1   1   1   2   2   3   3   4   4   4   4   4   5   5   5   5  
 LCS     556       V     3    6   29       C        0   0   0   0   1   1   1   1   1   1   1   1   1   2   2   3   4   4   5   5  
 LCS     557       E     3    6    9       C        0   0   0   0   1   1   1   1   1   1   1   1   1   1   2   3   4   5   5   5  
 LCS     558       E     3    3    9       H        0   0   0   0   0   1   1   1   1   1   1   1   2   3   3   3   3   4   5   5  
 LCS     559       T     3    6   14       H        0   0   0   0   1   1   1   1   1   1   1   3   4   5   5   5   6   6   7   7  
 LCS     560       K     4    6   14       H        0   0   0   0   1   1   1   1   2   2   3   3   4   5   5   5   6   6   7   7  
 LCS     561       V     4    6   14       C        0   0   0   0   1   1   1   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     562       Y     4    6   14       C        0   0   0   1   1   1   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     563       R     4    9   14       C        0   0   0   1   1   1   2   2   2   3   3   3   4   5   5   5   6   6   7   7  
 LCS     564       P     8    9   14       C        0   0   1   1   1   1   1   1   1   2   2   2   3   3   3   4   5   5   6   6  
 LCS     565       S     8    9   14       H        0   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   6   6  
 LCS     566       A     8    9   14       H        1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   3   3   3   4  
 LCS     567       W     8    9   14       H        1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   3   3   3   4  
 LCS     568       A     8    9   14       H        1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   3   3   3   4  
 LCS     569       A     8    9   14       H        1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   3   3   3   4  
 LCS     570       H     8    9   14       H        1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   3   3   3   4  
 LCS     571       G     8    9   14       C        1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   3   3   3   4  
 LCS     572       M     3    9   14       C        0   0   0   1   1   1   1   1   1   1   1   1   1   2   2   2   2   2   3   5  
 LCS     573       D     3    4   14       C        0   0   0   0   0   0   1   1   1   1   1   1   1   2   2   2   2   2   3   5  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.22 
 
 NUMBER_OF_CA_Tg:  586      NUMBER_OF_CA_Pr:  116      PERCENT_OF_CA:  19.80  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      13      13      14      15      16      18      20      21      23      24      25      26      30      34      35      36      39      42      43  
 GDT PERCENT_OF_CA_Pr    8.62   11.21   11.21   12.07   12.93   13.79   15.52   17.24   18.10   19.83   20.69   21.55   22.41   25.86   29.31   30.17   31.03   33.62   36.21   37.07 
 GDT PERCENT_OF_CA_Tg    1.71    2.22    2.22    2.39    2.56    2.73    3.07    3.41    3.58    3.92    4.10    4.27    4.44    5.12    5.80    5.97    6.14    6.66    7.17    7.34 
 GDT FRAGMENT: Beg-End 536-548 536-548 536-548 534-548 533-548 532-548 531-549 529-549 461-549 460-549 461-551 460-551 461-555 460-563 460-563 460-563 440-563 460-563 459-563 440-563 
 GDT RMS_LOCAL           0.25    0.50    0.50    1.01    1.45    1.63    1.98    2.37    2.50    2.84    3.26    3.38    3.90    5.01    5.57    5.61    5.73    6.10    6.44    6.57 
 GDT RMS_ALL_CA         25.08   25.31   25.31   24.77   24.28   24.15   23.99   23.89   23.91   23.87   23.96   23.93   24.02   17.38   17.47   17.46   17.43   17.58   17.54   17.47 
 
 
 TEST (CA)  RMS =  16.73               (Number of atoms:  116) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   16.73        116    19.8   586     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1442                            CRMSCA  
     SECONDARY STRUCTURE . .   16.98         67    21.8   308     CRMSCA  
     SURFACE . . . . . . . .   16.52         92    19.6   469     CRMSCA  
     BURIED  . . . . . . . .   17.50         24    20.5   117     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   16.78        464    19.8  2344     CRMSMC  
     SECONDARY STRUCTURE . .   17.06        268    21.8  1232     CRMSMC  
     SURFACE . . . . . . . .   16.59        368    19.6  1876     CRMSMC  
     BURIED  . . . . . . . .   17.50         96    20.5   468     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0     0     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0     0     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0     0     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0     0     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0     0     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.78        464    19.8  2344     CRMSALL 
     SECONDARY STRUCTURE . .   17.06        268    21.8  1232     CRMSALL 
     SURFACE . . . . . . . .   16.59        368    19.6  1876     CRMSALL 
     BURIED  . . . . . . . .   17.50         96    20.5   468     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.280      1.000       0.500    116    19.8   586     ERRCA  
     SECONDARY STRUCTURE . .   15.653      1.000       0.500     67    21.8   308     ERRCA  
     SURFACE . . . . . . . .   15.132      1.000       0.500     92    19.6   469     ERRCA  
     BURIED  . . . . . . . .   15.844      1.000       0.500     24    20.5   117     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.348      1.000       0.500    464    19.8  2344     ERRMC  
     SECONDARY STRUCTURE . .   15.728      1.000       0.500    268    21.8  1232     ERRMC  
     SURFACE . . . . . . . .   15.214      1.000       0.500    368    19.6  1876     ERRMC  
     BURIED  . . . . . . . .   15.862      1.000       0.500     96    20.5   468     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.348      1.000       0.500    464    19.8  2344     ERRALL 
     SECONDARY STRUCTURE . .   15.728      1.000       0.500    268    21.8  1232     ERRALL 
     SURFACE . . . . . . . .   15.214      1.000       0.500    368    19.6  1876     ERRALL 
     BURIED  . . . . . . . .   15.862      1.000       0.500     96    20.5   468     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         2         5        32     116     586   DISTCA 
CA  (P)      0.00      0.17      0.34      0.85      5.46             586   DISTCA 
CA  (RMS)    0.00      1.17      1.69      3.40      7.58                   DISTCA 
 
ALL (N)         0         4         7        20       122     464    2344   DISTALL 
ALL (P)      0.00      0.17      0.30      0.85      5.20            2344   DISTALL 
ALL (RMS)    0.00      1.45      1.97      3.61      7.50                   DISTALL 
 
 
 
 
END of the results output 
