 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 61 , MODEL 61 , TARGET 221 
#          The number of residues possible to evaluate: 61 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     8     L     E     C             1.00 
 SSP     9     L     E     E             1.00 
 SSP    10     V     E     E             1.00 
 SSP    11     M     E     E             1.00 
 SSP    12     A     E     C             1.00 
 SSP  BREAK 
 SSP    19     E     H     C             1.00 
 SSP    20     E     H     H             1.00 
 SSP    21     D     H     H             1.00 
 SSP    22     I     H     H             1.00 
 SSP    23     E     H     H             1.00 
 SSP    24     R     H     H             1.00 
 SSP    25     Y     H     H             1.00 
 SSP    26     Y     H     H             1.00 
 SSP    27     T     H     H             1.00 
 SSP    28     H     H     H             1.00 
 SSP    29     I     H     H             1.00 
 SSP    30     R     C     C             1.00 
 SSP  BREAK 
 SSP    39     M     H     C             1.00 
 SSP    40     L     H     E             1.00 
 SSP    41     Q     H     E             1.00 
 SSP    42     D     H     E             1.00 
 SSP    43     L     H     C             1.00 
 SSP  BREAK 
 SSP    67     L     H     C             1.00 
 SSP    68     E     H     H             1.00 
 SSP    69     Q     H     H             1.00 
 SSP    70     H     H     H             1.00 
 SSP    71     L     H     H             1.00 
 SSP    72     N     H     H             1.00 
 SSP    73     E     H     H             1.00 
 SSP    74     I     H     C             1.00 
 SSP  BREAK 
 SSP    82     A     E     C             1.00 
 SSP    83     Y     E     E             1.00 
 SSP    84     I     E     E             1.00 
 SSP    85     G     E     E             1.00 
 SSP    86     L     E     C             1.00 
 SSP  BREAK 
 SSP    89     I     C     C             1.00 
 SSP    90     E     C     H             1.00 
 SSP    91     P     C     H             1.00 
 SSP    92     F     E     H             1.00 
 SSP    93     I     H     H             1.00 
 SSP    94     E     H     H             1.00 
 SSP    95     D     H     H             1.00 
 SSP    96     A     H     H             1.00 
 SSP    97     V     H     C             1.00 
 SSP  BREAK 
 SSP   108     A     E     C             1.00 
 SSP   109     V     E     E             1.00 
 SSP   110     S     E     E             1.00 
 SSP   111     I     E     E             1.00 
 SSP   112     V     E     E             1.00 
 SSP   113     L     C     C             1.00 
 SSP  BREAK 
 SSP   127     K     H     C             1.00 
 SSP   128     R     H     H             1.00 
 SSP   129     A     H     H             1.00 
 SSP   130     K     H     H             1.00 
 SSP   131     E     H     H             1.00 
 SSP   132     E     H     H             1.00 
 SSP   133     A     H     H             1.00 
 SSP   134     E     H     C             1.00 
 SSP  BREAK 
 SSP   157     W     H     C             1.00 
 SSP   158     V     H     E             1.00 
 SSP   159     D     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              63.9      65.0     62.5     60.0     27.6 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        76.6      76.9     81.2     60.0     27.6 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            9              77.8              22.2 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      61    100.0     63.9 
 
 BIN  0.00 - 1.00      1.00      61    100.0     63.9 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          59              59            72            221 
 ALL CONTACTS (< 8.0A)     236             205           289           1046 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       236        140   59.32   68.29   13.38       0     0.00         205      1046  |   1-9999 
 RES CONTACTS       132        126   95.45   96.18   19.44       0     0.00         131       648  |   1-4    
 RES CONTACTS         1          1  100.00   12.50    1.82       0     0.00           8        55  |   5-8    
 RES CONTACTS       103         13   12.62   19.70    3.79       0     0.00          66       343  |   9-9999 
 
 
 
# WARNING! TARGET 1785 atoms, MODEL 2256 atoms, 1581 common with TARGET 
           Number of atoms possible to evaluate: 302 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    51.42           76.9   104    23.6   440     ARMSMC  
     SECONDARY STRUCTURE . .    46.21           81.1    95    32.1   296     ARMSMC  
     SURFACE . . . . . . . .    55.94           75.0    52    18.4   282     ARMSMC  
     BURIED  . . . . . . . .    46.46           78.8    52    32.9   158     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   190     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   178     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   129     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    63     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   155     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   128     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   105     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   109     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    46     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    60     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    48     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    61     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    25     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    24     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    8 - 12   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5      8 - 12       0.43     0.43 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   19 - 30   12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     19 - 30       1.01     1.01 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   39 - 43   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     39 - 43       3.37     3.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   67 - 74   8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     67 - 74       0.25     0.25 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   82 - 86   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     82 - 86       0.63     0.63 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6   89 - 97   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     89 - 97       2.69     2.69 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7  108 - 113  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    108 - 113      0.86     0.86 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8  127 - 134  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    127 - 134      0.17     0.17 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  9  157 - 159  3    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    157 - 159      0.77     0.77 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    8 - 12   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5      8 - 12       0.43     0.43 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   19 - 30   12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     19 - 30       1.01     1.01 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   39 - 43   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3     39 - 41       0.87     5.49 
  LONGEST_CONTINUOUS_SEGMENT     3     40 - 42       0.64     4.79 
  LONGEST_CONTINUOUS_SEGMENT     3     41 - 43       1.00     6.41 
  LCS LOCAL_SCORE:             60.00 
 
 FRAGMENT  4   67 - 74   8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     67 - 74       0.25     0.25 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   82 - 86   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     82 - 86       0.63     0.63 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6   89 - 97   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     91 - 97       1.97     3.35 
  LCS LOCAL_SCORE:             70.37 
 
 FRAGMENT  7  108 - 113  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    108 - 113      0.86     0.86 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8  127 - 134  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    127 - 134      0.17     0.17 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  9  157 - 159  3    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    157 - 159      0.77     0.77 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    8 - 12   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5      8 - 12       0.43     0.43 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   19 - 30   12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     20 - 30       0.80     1.11 
  LCS LOCAL_SCORE:             87.50 
 
 FRAGMENT  3   39 - 43   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3     39 - 41       0.87     5.49 
  LONGEST_CONTINUOUS_SEGMENT     3     40 - 42       0.64     4.79 
  LCS LOCAL_SCORE:             48.00 
 
 FRAGMENT  4   67 - 74   8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     67 - 74       0.25     0.25 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   82 - 86   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     82 - 86       0.63     0.63 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6   89 - 97   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     92 - 97       0.13     4.54 
  LCS LOCAL_SCORE:             59.26 
 
 FRAGMENT  7  108 - 113  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    108 - 113      0.86     0.86 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8  127 - 134  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    127 - 134      0.17     0.17 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  9  157 - 159  3    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    157 - 159      0.77     0.77 
  LCS LOCAL_SCORE:            100.00 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       8       L     5    5    5       E        1   2   2   2   2   2   3   3   4   4   4   4   5   5   9   9  10  14  14  14  
 LCS       9       L     5    5    5       E        1   2   2   2   2   2   3   3   4   4   4   4   5   6  11  12  13  14  14  14  
 LCS      10       V     5    5    5       E        1   2   2   2   2   2   3   5   7   8   9  10  12  12  13  13  13  14  14  14  
 LCS      11       M     5    5    5       E        1   2   2   2   2   2   3   4   7   8   9  10  12  12  13  13  13  14  14  14  
 LCS      12       A     5    5    5       E        1   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      13       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      14       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      15       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      16       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      17       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      18       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      19       E     5   12   12       H        1   1   4   5   5   5   5   6   7   7   7   8   9   9   9  10  11  11  13  14  
 LCS      20       E    11   12   12       H        1   1   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      21       D    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      22       I    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      23       E    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      24       R    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      25       Y    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      26       Y    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      27       T    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      28       H    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      29       I    11   12   12       H        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      30       R    11   12   12       C        4   4   4   5   5   5   5   6   7   7   8   8   9   9   9  10  11  11  13  14  
 LCS      31       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      32       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      33       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      34       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      35       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      36       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      37       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      38       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      39       M     3    3    5       H        0   1   1   1   3   3   4   5   7   7   7   7   7   8   8   8   8   9   9  11  
 LCS      40       L     3    3    5       H        0   1   1   1   3   3   5   5   7   7   7   7   7   8   8   8   8   9   9  11  
 LCS      41       Q     3    3    5       H        0   1   1   1   4   4   5   6   7   7   7   7   7   8   8   8   8   9   9   9  
 LCS      42       D     3    3    5       H        0   1   1   1   1   1   5   6   7   7   7   7   7   8   8   8   8   9   9   9  
 LCS      43       L     0    3    5       H        0   0   1   1   1   1   5   6   7   7   7   7   7   8   8   8   8   9   9   9  
 LCS      44       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      46       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      47       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      48       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      49       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      50       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      51       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      52       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      53       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      54       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      55       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      56       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      57       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      58       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      59       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      60       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      62       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      63       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      64       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      65       H     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      66       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      67       L     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   4   4   4   4   6  10  11  13  14  
 LCS      68       E     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   7   8   9   9  10  11  11  13  14  
 LCS      69       Q     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   4   4   4   6   7   8   9   9  14  
 LCS      70       H     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   4   4   4   5   7   8   9   9  10  
 LCS      71       L     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   4   4   4   5   6   7   8  13  14  
 LCS      72       N     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   4   4   4   5   6   7   8   9   9  
 LCS      73       E     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   4   4   4   5   7   8   9   9  10  
 LCS      74       I     8    8    8       H        3   3   3   3   3   4   4   4   4   4   4   4   4   4   5   5   6   8   9   9  
 LCS      75       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      76       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      77       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      78       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      79       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      80       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      81       K     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      82       A     5    5    5       E        1   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      83       Y     5    5    5       E        1   2   2   2   3   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      84       I     5    5    5       E        1   2   2   2   2   3   3   4   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      85       G     5    5    5       E        1   2   2   2   2   3   4   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      86       L     5    5    5       E        1   2   2   2   2   3   3   5   6   8  10  10  12  12  13  13  13  14  14  14  
 LCS      87       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      88       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      89       I     4    4    9       C        1   1   2   2   2   3   3   4   4   5   6   7   8   9  13  13  13  14  14  14  
 LCS      90       E     4    4    9       C        1   1   2   2   2   3   3   4   4   4   4   5   7   9   9   9  10  14  14  14  
 LCS      91       P     4    7    9       C        1   1   2   2   2   3   3   4   6   8  10  10  12  12  13  13  13  14  14  14  
 LCS      92       F     6    7    9       E        2   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      93       I     6    7    9       H        2   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      94       E     6    7    9       H        2   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      95       D     6    7    9       H        2   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      96       A     6    7    9       H        2   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      97       V     6    7    9       H        2   2   2   2   4   4   4   5   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS      98       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      99       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     100       M     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     101       H     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     102       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     103       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     104       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     105       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     106       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     107       E     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     108       A     6    6    6       E        1   1   2   2   3   3   4   4   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     109       V     6    6    6       E        1   2   2   2   2   3   4   4   5   6   6   9  12  12  13  13  13  14  14  14  
 LCS     110       S     6    6    6       E        1   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     111       I     6    6    6       E        1   2   2   2   3   4   4   5   6   8  10  10  12  12  13  13  13  14  14  14  
 LCS     112       V     6    6    6       E        1   2   2   3   4   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     113       L     6    6    6       C        1   2   2   2   2   2   2   4   5   6   6   7   8  12  12  13  13  14  14  14  
 LCS     114       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     115       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     116       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     117       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     118       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     119       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     120       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     121       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     122       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     123       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     124       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     125       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     126       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     127       K     8    8    8       H        3   3   3   3   3   3   4   4   5   8  10  10  12  12  13  13  13  14  14  14  
 LCS     128       R     8    8    8       H        3   3   3   3   3   3   4   4   4   4   8  10  11  12  13  13  13  14  14  14  
 LCS     129       A     8    8    8       H        3   3   3   3   3   3   4   4   4   4   5  10  12  12  13  13  13  14  14  14  
 LCS     130       K     8    8    8       H        3   3   3   3   3   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     131       E     8    8    8       H        3   3   3   3   3   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     132       E     8    8    8       H        3   3   3   3   3   3   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     133       A     8    8    8       H        3   3   3   3   3   3   4   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     134       E     8    8    8       H        3   3   3   3   3   4   5   6   7   8  10  10  12  12  13  13  13  14  14  14  
 LCS     135       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     136       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     137       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     138       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     139       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     140       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     141       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     142       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     143       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     144       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     145       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     146       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     147       W     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     148       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     149       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     150       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     151       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     152       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     153       F     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     154       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     155       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     156       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     157       W     3    3    3       H        0   1   1   1   1   4   4   4   4   4   4   4   4   4   4   4   4   4   4   5  
 LCS     158       V     3    3    3       H        0   1   1   1   1   1   1   1   1   1   4   4   4   4   4   4   4   4   4   4  
 LCS     159       D     3    3    3       H        0   1   1   1   1   1   1   1   1   1   1   1   4   4   4   4   4   4   4   4  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.84 
 
 NUMBER_OF_CA_Tg:  221      NUMBER_OF_CA_Pr:   61      PERCENT_OF_CA:  27.60  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      10      11      12      12      12      13      15      17      19      23      24      27      28      29      30      30      31      33      33  
 GDT PERCENT_OF_CA_Pr   14.75   16.39   18.03   19.67   19.67   19.67   21.31   24.59   27.87   31.15   37.70   39.34   44.26   45.90   47.54   49.18   49.18   50.82   54.10   54.10 
 GDT PERCENT_OF_CA_Tg    4.07    4.52    4.98    5.43    5.43    5.43    5.88    6.79    7.69    8.60   10.41   10.86   12.22   12.67   13.12   13.57   13.57   14.03   14.93   14.93 
 GDT FRAGMENT: Beg-End  22-30   21-30   20-30   19-30   19-30   19-30   19-43   12-134  19-43   10-134  12-134  10-134  10-134  10-134  10-134  10-134  10-134   9-134   8-134   8-134 
 GDT RMS_LOCAL           0.23    0.34    0.80    1.01    1.01    1.01    1.62    3.02    2.94    3.53    4.09    4.18    4.51    4.62    4.78    4.96    4.96    5.14    5.50    5.50 
 GDT RMS_ALL_CA         20.91   21.05   20.69   19.55   19.55   19.55   23.02   17.87   25.24   17.92   17.47   17.47   17.44   17.45   17.37   17.49   17.49   17.53   17.64   17.64 
 
 
 TEST (CA)  RMS =  13.46               (Number of atoms:   61) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   13.46         61    27.6   221     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2207                            CRMSCA  
     SECONDARY STRUCTURE . .   13.52         55    37.2   148     CRMSCA  
     SURFACE . . . . . . . .   14.67         31    21.8   142     CRMSCA  
     BURIED  . . . . . . . .   12.09         30    38.0    79     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   13.60        302    27.7  1092     CRMSMC  
     SECONDARY STRUCTURE . .   13.66        273    37.1   736     CRMSMC  
     SURFACE . . . . . . . .   14.75        154    22.0   700     CRMSMC  
     BURIED  . . . . . . . .   12.30        148    37.8   392     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   13.89         58     6.4   901     CRMSSC  
     RELIABLE SIDE CHAINS  .   13.89         58     7.4   789     CRMSSC  
     SECONDARY STRUCTURE . .   13.92         53     8.6   617     CRMSSC  
     SURFACE . . . . . . . .   15.17         30     4.9   616     CRMSSC  
     BURIED  . . . . . . . .   12.39         28     9.8   285     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   13.60        302    16.9  1785     CRMSALL 
     SECONDARY STRUCTURE . .   13.66        273    22.6  1209     CRMSALL 
     SURFACE . . . . . . . .   14.75        154    13.0  1184     CRMSALL 
     BURIED  . . . . . . . .   12.30        148    24.6   601     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.879      1.000       0.500     61    27.6   221     ERRCA  
     SECONDARY STRUCTURE . .   11.788      1.000       0.500     55    37.2   148     ERRCA  
     SURFACE . . . . . . . .   13.016      1.000       0.500     31    21.8   142     ERRCA  
     BURIED  . . . . . . . .   10.704      1.000       0.500     30    38.0    79     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.000      1.000       0.500    302    27.7  1092     ERRMC  
     SECONDARY STRUCTURE . .   11.916      1.000       0.500    273    37.1   736     ERRMC  
     SURFACE . . . . . . . .   13.067      1.000       0.500    154    22.0   700     ERRMC  
     BURIED  . . . . . . . .   10.890      1.000       0.500    148    37.8   392     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.314      1.000       0.500     58     6.4   901     ERRSC  
     RELIABLE SIDE CHAINS  .   12.314      1.000       0.500     58     7.4   789     ERRSC  
     SECONDARY STRUCTURE . .   12.221      1.000       0.500     53     8.6   617     ERRSC  
     SURFACE . . . . . . . .   13.434      1.000       0.500     30     4.9   616     ERRSC  
     BURIED  . . . . . . . .   11.115      1.000       0.500     28     9.8   285     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.000      1.000       0.500    302    16.9  1785     ERRALL 
     SECONDARY STRUCTURE . .   11.916      1.000       0.500    273    22.6  1209     ERRALL 
     SURFACE . . . . . . . .   13.067      1.000       0.500    154    13.0  1184     ERRALL 
     BURIED  . . . . . . . .   10.890      1.000       0.500    148    24.6   601     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         4        27      61     221   DISTCA 
CA  (P)      0.00      0.00      0.45      1.81     12.22             221   DISTCA 
CA  (RMS)    0.00      0.00      2.75      3.29      7.23                   DISTCA 
 
ALL (N)         0         3         7        23       132     302    1785   DISTALL 
ALL (P)      0.00      0.17      0.39      1.29      7.39            1785   DISTALL 
ALL (RMS)    0.00      1.71      2.13      3.58      7.24                   DISTALL 
 
 
 
 
END of the results output 
