 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 123 , MODEL 123 , TARGET 221 
#          The number of residues possible to evaluate: 123 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     3     R     C     C             1.00 
 SSP     4     K     E     E             1.00 
 SSP     5     K     E     E             1.00 
 SSP     6     M     E     C             1.00 
 SSP     7     G     E     C             1.00 
 SSP     8     L     E     H             1.00 
 SSP     9     L     E     H             1.00 
 SSP    10     V     E     H             1.00 
 SSP    11     M     E     H             1.00 
 SSP    12     A     E     H             1.00 
 SSP    13     Y     C     H             1.00 
 SSP    14     G     C     H             1.00 
 SSP    15     T     C     C             1.00 
 SSP    16     P     C     C             1.00 
 SSP    17     Y     C     C             1.00 
 SSP    18     K     C     C             1.00 
 SSP    19     E     H     C             1.00 
 SSP    20     E     H     E             1.00 
 SSP    21     D     H     C             1.00 
 SSP    22     I     H     C             1.00 
 SSP    23     E     H     H             1.00 
 SSP    24     R     H     H             1.00 
 SSP    25     Y     H     H             1.00 
 SSP    26     Y     H     H             1.00 
 SSP    27     T     H     H             1.00 
 SSP    28     H     H     H             1.00 
 SSP    29     I     H     H             1.00 
 SSP    30     R     C     C             1.00 
 SSP    31     R     C     C             1.00 
 SSP    32     G     C     C             1.00 
 SSP    33     R     C     C             1.00 
 SSP    34     K     C     C             1.00 
 SSP    35     P     C     H             1.00 
 SSP    36     E     C     H             1.00 
 SSP    37     P     H     H             1.00 
 SSP    38     E     H     H             1.00 
 SSP    39     M     H     H             1.00 
 SSP    40     L     H     C             1.00 
 SSP    41     Q     H     C             1.00 
 SSP    42     D     H     H             1.00 
 SSP    43     L     H     H             1.00 
 SSP    44     K     H     H             1.00 
 SSP    45     D     H     H             1.00 
 SSP    46     R     H     H             1.00 
 SSP    47     Y     H     H             1.00 
 SSP    48     E     H     H             1.00 
 SSP    49     A     H     H             1.00 
 SSP    50     I     C     H             1.00 
 SSP    51     G     C     H             1.00 
 SSP    52     G     C     H             1.00 
 SSP    53     I     C     C             1.00 
 SSP    54     S     H     C             1.00 
 SSP    55     P     H     C             1.00 
 SSP    56     L     H     E             1.00 
 SSP    57     A     H     C             1.00 
 SSP    58     Q     H     C             1.00 
 SSP    59     I     H     H             1.00 
 SSP    60     T     H     H             1.00 
 SSP    61     E     H     H             1.00 
 SSP    62     Q     H     H             1.00 
 SSP    63     Q     H     H             1.00 
 SSP    64     A     H     H             1.00 
 SSP    65     H     H     H             1.00 
 SSP    66     N     H     H             1.00 
 SSP    67     L     H     C             1.00 
 SSP    68     E     H     C             1.00 
 SSP    69     Q     H     C             1.00 
 SSP    70     H     H     E             1.00 
 SSP    71     L     H     E             1.00 
 SSP    72     N     H     E             1.00 
 SSP    73     E     H     C             1.00 
 SSP    74     I     H     C             1.00 
 SSP    75     Q     C     H             1.00 
 SSP    76     D     C     H             1.00 
 SSP    77     E     C     H             1.00 
 SSP    78     I     E     H             1.00 
 SSP    79     T     E     H             1.00 
 SSP    80     F     E     H             1.00 
 SSP    81     K     E     H             1.00 
 SSP    82     A     E     H             1.00 
 SSP    83     Y     E     H             1.00 
 SSP    84     I     E     H             1.00 
 SSP    85     G     E     H             1.00 
 SSP    86     L     E     H             1.00 
 SSP    87     K     C     H             1.00 
 SSP    88     H     C     C             1.00 
 SSP    89     I     C     C             1.00 
 SSP    90     E     C     H             1.00 
 SSP    91     P     C     H             1.00 
 SSP    92     F     E     H             1.00 
 SSP    93     I     H     H             1.00 
 SSP    94     E     H     H             1.00 
 SSP    95     D     H     H             1.00 
 SSP    96     A     H     H             1.00 
 SSP    97     V     H     H             1.00 
 SSP    98     A     H     H             1.00 
 SSP    99     E     H     H             1.00 
 SSP   100     M     H     C             1.00 
 SSP   101     H     H     H             1.00 
 SSP   102     K     H     H             1.00 
 SSP   103     D     C     H             1.00 
 SSP   104     G     C     H             1.00 
 SSP   105     I     C     H             1.00 
 SSP   106     T     C     H             1.00 
 SSP   107     E     E     C             1.00 
 SSP   108     A     E     C             1.00 
 SSP   109     V     E     E             1.00 
 SSP   110     S     E     E             1.00 
 SSP   111     I     E     E             1.00 
 SSP   112     V     E     C             1.00 
 SSP   113     L     C     C             1.00 
 SSP   114     A     C     H             1.00 
 SSP   115     P     C     H             1.00 
 SSP   116     H     C     H             1.00 
 SSP   117     F     C     H             1.00 
 SSP   118     S     C     H             1.00 
 SSP   119     T     C     H             1.00 
 SSP   120     F     C     H             1.00 
 SSP   121     S     C     H             1.00 
 SSP   122     V     H     H             1.00 
 SSP   123     Q     H     H             1.00 
 SSP   124     S     H     H             1.00 
 SSP   125     Y     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              46.3      64.4     20.0     35.9     55.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        52.7      61.8     28.0     49.4     55.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8              75.2              24.8 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            2                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     123    100.0     46.3 
 
 BIN  0.00 - 1.00      1.00     123    100.0     46.3 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         119             119           121            221 
 ALL CONTACTS (< 8.0A)     465             514           478           1046 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       465        262   56.34   50.97   25.05       0     0.00         514      1046  |   1-9999 
 RES CONTACTS       341        257   75.37   78.12   39.66       0     0.00         329       648  |   1-4    
 RES CONTACTS        17          2   11.76    5.71    3.64       0     0.00          35        55  |   5-8    
 RES CONTACTS       107          3    2.80    2.00    0.87       0     0.00         150       343  |   9-9999 
 
 
 
# WARNING! TARGET 1785 atoms, MODEL 2092 atoms, 1387 common with TARGET 
           Number of atoms possible to evaluate: 604 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    80.94           51.6   244    55.5   440     ARMSMC  
     SECONDARY STRUCTURE . .    72.79           58.8   165    55.7   296     ARMSMC  
     SURFACE . . . . . . . .    75.21           53.7   147    52.1   282     ARMSMC  
     BURIED  . . . . . . . .    88.92           48.5    97    61.4   158     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   190     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   178     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   129     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    63     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   155     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   128     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   105     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   109     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    46     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    60     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    48     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    61     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    25     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    24     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    3 - 125  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    29     88 - 116      4.99    22.56 
  LONGEST_CONTINUOUS_SEGMENT    29     89 - 117      4.65    23.36 
  LCS LOCAL_SCORE:             15.30 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    3 - 125  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     91 - 104      1.97    23.74 
  LONGEST_CONTINUOUS_SEGMENT    14     92 - 105      1.87    22.23 
  LCS LOCAL_SCORE:              6.33 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    3 - 125  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     41 - 51       0.33    37.73 
  LCS LOCAL_SCORE:              4.69 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       3       R     4    4    9       C        1   1   1   1   1   2   2   2   3   3   8   8   9  10  12  14  14  15  16  16  
 LCS       4       K     4    4    9       E        1   1   1   1   1   2   2   4   6   6   8   8   9  10  10  11  14  15  16  16  
 LCS       5       K     4    5   10       E        1   1   1   1   1   2   2   6   6   7   8   9   9  10  12  14  14  15  16  16  
 LCS       6       M     4    5   10       E        1   1   1   1   1   1   5   6   6   7   8   9   9  10  12  14  14  15  16  16  
 LCS       7       G     3    5   10       E        1   1   1   1   1   2   2   2   3   4   6   8   9  10  10  13  14  15  16  17  
 LCS       8       L     3    5   10       E        1   1   1   1   1   2   2   2   3   4   6   8   8  10  10  14  14  15  16  16  
 LCS       9       L     3    5   10       E        1   1   1   1   1   2   2   2   4   7   7   9  10  12  13  14  15  15  16  18  
 LCS      10       V     3    3   10       E        0   1   1   1   1   2   3   3   4   7   7   9  10  12  13  14  15  16  20  21  
 LCS      11       M     3    4   10       E        0   1   1   1   1   2   3   4   4   7   7   9  10  12  13  15  16  18  20  21  
 LCS      12       A     3    4   10       E        1   1   1   1   1   2   3   3   4   5   7   9  11  12  14  15  16  18  20  21  
 LCS      13       Y     3    4   10       C        1   1   1   1   2   2   3   3   4   5   7   7   8   8   8  15  16  17  18  20  
 LCS      14       G     3    4   10       C        1   1   1   1   1   2   3   3   4   4   5   6   8   8   8   9  10  11  13  20  
 LCS      15       T     3    3   10       C        0   1   1   1   1   1   2   3   3   4   4   5   6   8   8  10  13  14  18  20  
 LCS      16       P     3    3   10       C        0   1   1   1   1   1   2   2   3   4   4   5   6   8   8   9  10  10  10  12  
 LCS      17       Y     3    3   17       C        0   1   1   1   1   1   2   2   3   3   4   5   6   8   8   9  10  10  10  11  
 LCS      18       K     3    3   19       C        0   1   1   1   1   2   2   3   6   8   9  12  13  13  14  14  15  16  16  19  
 LCS      19       E     3   12   19       H        0   1   1   1   4   5   5   6   6   6   9  10  12  13  14  14  15  16  16  17  
 LCS      20       E     4   12   19       H        0   1   1   3   4   5   5   6   8   9  11  12  13  13  14  14  15  16  16  18  
 LCS      21       D     4   12   19       H        0   1   1   2   4   5   5   7   9  10  11  12  13  13  14  15  16  17  19  21  
 LCS      22       I     9   12   19       H        4   4   4   4   4   4   5   7   9  10  11  12  13  13  14  15  16  18  20  21  
 LCS      23       E     9   12   19       H        4   4   4   4   4   5   5   6   9  10  11  12  13  13  14  15  16  18  20  21  
 LCS      24       R     9   12   19       H        4   4   4   4   4   5   5   6   9  10  11  12  13  13  14  15  16  18  20  21  
 LCS      25       Y     9   12   19       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  15  16  18  20  21  
 LCS      26       Y     9   12   19       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  15  16  18  20  21  
 LCS      27       T     9   12   19       H        4   4   4   4   4   5   5   6   9  10  11  12  13  13  14  14  15  18  20  21  
 LCS      28       H     9   12   19       H        4   4   4   4   4   5   5   6   9  10  11  12  13  13  14  14  15  16  20  21  
 LCS      29       I     9   12   19       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  18  20  
 LCS      30       R     9   12   19       C        4   4   4   4   4   5   5   6   9  10  11  12  13  13  14  14  15  16  18  20  
 LCS      31       R     3   11   19       C        1   1   1   1   1   1   4   4   5   6   6   7   9  11  13  14  15  16  16  17  
 LCS      32       G     3   11   19       C        1   1   3   4   4   4   5   6   6   6   7   7   8   8   9  11  12  14  16  16  
 LCS      33       R     3    4   21       C        1   1   1   3   4   5   5   6   6   9  10  11  13  13  14  14  15  16  18  20  
 LCS      34       K     3    4   21       C        1   1   1   3   3   4   4   5   7   9  10  12  13  13  14  14  15  18  20  21  
 LCS      35       P     3    5   21       C        1   1   1   3   3   4   5   6   9  10  11  12  13  13  14  14  15  16  18  21  
 LCS      36       E     5    5   21       C        2   2   2   2   3   4   5   7   9  10  11  12  13  13  14  14  15  16  18  21  
 LCS      37       P     5    5   21       H        2   2   2   2   2   2   3   4   6   6   9  11  12  13  14  14  15  18  20  21  
 LCS      38       E     5    5   21       H        2   2   2   2   2   2   3   4   4   5   7   9  12  13  14  14  15  16  16  17  
 LCS      39       M     5    5   21       H        2   2   2   2   2   2   3   4   5   7   8  10  12  13  14  14  15  16  16  17  
 LCS      40       L     5    5   21       H        2   2   2   2   2   2   3   4   4   5   7   9  10  13  14  14  15  16  16  17  
 LCS      41       Q    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  16  17  
 LCS      42       D    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  16  17  
 LCS      43       L    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  18  20  
 LCS      44       K    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  18  21  
 LCS      45       D    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  16  17  
 LCS      46       R    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  18  20  
 LCS      47       Y    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  18  20  21  
 LCS      48       E    11   12   21       H        4   4   4   4   4   5   5   7   8  10  11  12  13  13  14  14  15  17  19  21  
 LCS      49       A    11   12   21       H        4   4   4   4   4   5   5   7   9  10  11  12  13  13  14  14  15  16  18  21  
 LCS      50       I    11   12   21       C        4   4   4   4   4   5   5   7   8   9  11  12  13  13  14  14  15  17  20  21  
 LCS      51       G    11   12   21       C        4   4   4   4   4   4   5   6   6   7   8   9  11  12  14  14  16  18  20  21  
 LCS      52       G     3   12   21       C        1   1   1   3   4   5   5   7   9  10  11  12  13  13  14  15  16  18  20  21  
 LCS      53       I     3    4   21       C        0   1   1   1   1   1   1   2   7   8  11  12  13  13  14  15  16  18  20  21  
 LCS      54       S     3    3   21       H        1   1   1   2   3   4   5   7   9  10  11  12  13  13  14  15  16  18  20  21  
 LCS      55       P     3    3   20       H        1   1   1   1   1   3   4   6   7   9  10  11  12  13  14  15  16  18  20  21  
 LCS      56       L     3    3   19       H        1   1   1   1   2   3   4   5   6   8   9  10  11  12  14  15  16  18  20  21  
 LCS      57       A     3    3   19       H        1   1   1   1   1   2   4   6   6   8   9   9  11  12  14  15  16  18  20  21  
 LCS      58       Q    10   10   12       H        2   4   4   4   4   4   4   4   4   4   5   5   7   8   9  10  12  15  18  20  
 LCS      59       I    10   10   12       H        4   4   4   4   4   4   4   4   4   4   5   5   7   8   9  10  11  11  12  13  
 LCS      60       T    10   10   12       H        4   4   4   4   4   4   4   4   4   5   6   7   8   8   9  10  12  14  18  20  
 LCS      61       E    10   10   12       H        4   4   4   4   4   4   4   4   5   6   7   9  10  11  13  14  16  18  20  21  
 LCS      62       Q    10   10   12       H        4   4   4   4   4   4   4   4   4   5   6   7   8   8  11  12  13  15  18  20  
 LCS      63       Q    10   10   12       H        4   4   4   4   4   4   4   4   4   5   6   7   8   8   9  10  11  11  12  12  
 LCS      64       A    10   10   12       H        4   4   4   4   4   4   4   4   4   5   6   7   8   8   9  10  11  11  12  12  
 LCS      65       H    10   10   12       H        4   4   4   4   4   4   4   4   4   5   6   7   8   8   9  10  11  11  12  16  
 LCS      66       N    10   10   12       H        4   4   4   4   4   4   4   4   4   4   6   7   7   8   9  10  11  11  11  11  
 LCS      67       L    10   10   12       H        4   4   4   4   4   4   4   4   4   4   4   4   6   6   7   8   9  10  10  12  
 LCS      68       E     3    3   12       H        1   1   1   1   1   3   4   5   5   7   8   9  12  13  14  15  16  18  20  21  
 LCS      69       Q     3    3   12       H        1   1   1   1   1   1   2   2   5   6   8   9   9  10  11  13  15  18  20  21  
 LCS      70       H     3    3    7       H        1   1   1   1   1   1   1   2   2   4   4   7   8  10  10  11  13  15  18  20  
 LCS      71       L     3    3    7       H        1   1   1   1   1   1   2   2   2   4   5   5   7   8  10  11  13  15  18  20  
 LCS      72       N     3    3    9       H        1   1   1   1   1   1   2   2   2   4   5   6   7   8   8   9  11  14  16  18  
 LCS      73       E     3    3    9       H        1   1   1   1   1   1   2   2   3   4   4   4   6   6   7   9  11  14  15  18  
 LCS      74       I     3    3   11       H        0   1   1   1   1   2   2   2   4   4   5   5   7   8   8   9   9  10  12  13  
 LCS      75       Q     4    5   11       C        1   1   1   2   2   2   3   3   4   4   5   5   6   8   8   9  10  10  12  14  
 LCS      76       D     4    5   11       C        1   1   1   2   2   2   2   3   3   4   4   4   6   8   8   9  10  12  13  14  
 LCS      77       E     4    5   11       C        1   1   1   2   2   2   2   2   3   4   4   4   5   6   6   8  10  11  13  14  
 LCS      78       I     4    5   11       E        1   1   1   2   2   2   2   3   4   4   5   5   6   8   8   9  10  12  13  14  
 LCS      79       T     4    5   11       E        1   1   1   2   2   2   2   3   3   4   4   4   5   6   6   8  10  12  13  14  
 LCS      80       F     3    3   11       E        1   1   1   1   1   1   1   3   3   4   4   4   5   6   6   9  10  12  13  16  
 LCS      81       K     3    3   11       E        1   1   1   1   1   1   2   3   3   4   4   4   4   5   7   8   9  12  13  16  
 LCS      82       A     3    3   11       E        1   1   1   1   1   1   4   4   5   6   7   7   8   8   8   9  10  12  13  14  
 LCS      83       Y     3    3   11       E        0   1   1   1   1   3   4   4   5   6   6   6   8   8   8   9  10  12  13  14  
 LCS      84       I     3    3   11       E        0   1   1   1   1   1   4   4   5   6   7   7   8   8   8   9  12  15  16  16  
 LCS      85       G     3    3    9       E        0   1   1   1   1   1   2   2   3   5   5   7   8   8   8   9  10  12  13  16  
 LCS      86       L     3    3    9       E        1   1   1   1   1   1   2   2   2   4   4   5   6   6   8   9  10  12  13  16  
 LCS      87       K     3    3   19       C        1   1   1   1   1   1   2   2   2   4   4   4   5   6   8   9  11  12  13  15  
 LCS      88       H     3    3   29       C        1   1   1   1   1   1   2   2   2   4   4   4   5   6   8   9  11  12  14  16  
 LCS      89       I     4    4   29       C        1   2   2   2   3   4   6   7   9  10  11  11  12  13  13  14  14  15  16  16  
 LCS      90       E     4    4   29       C        1   2   2   2   2   4   5   6   9  10  11  11  12  13  13  14  14  15  16  16  
 LCS      91       P     4   14   29       C        1   2   2   2   4   5   6   7   7  10  11  11  12  13  13  14  14  15  17  20  
 LCS      92       F     9   14   29       E        3   3   4   4   5   5   6   7   8  10  11  11  12  13  13  14  16  18  20  21  
 LCS      93       I     9   14   29       H        3   3   4   5   5   5   6   7   8  10  11  11  12  13  14  15  16  18  20  21  
 LCS      94       E     9   14   29       H        3   3   4   5   5   5   6   7   8  10  11  11  12  13  14  15  16  18  20  21  
 LCS      95       D     9   14   29       H        3   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS      96       A     9   14   29       H        3   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS      97       V     9   14   29       H        3   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS      98       A     9   14   29       H        3   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS      99       E     9   14   29       H        3   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     100       M     9   14   29       H        2   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     101       H     8   14   29       H        2   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     102       K     8   14   29       H        2   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     103       D     8   14   29       C        2   3   4   5   5   5   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     104       G     8   14   29       C        2   3   4   5   5   5   6   7   7   7   8   9  12  13  13  14  14  15  16  20  
 LCS     105       I     3   14   29       C        1   1   1   2   4   4   6   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     106       T     3    8   29       C        1   1   1   2   4   4   5   7   9  10  11  11  12  13  13  14  14  15  16  16  
 LCS     107       E     3    8   29       E        1   1   1   2   4   4   5   7   9  10  11  11  12  13  13  14  14  15  16  16  
 LCS     108       A     5    8   29       E        2   2   2   2   4   4   5   7   9  10  11  11  12  13  13  14  14  15  16  16  
 LCS     109       V     5    8   29       E        2   2   2   2   4   4   5   7   9  10  11  11  12  13  13  15  16  17  19  21  
 LCS     110       S     5    8   29       E        2   2   2   2   4   4   5   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     111       I     5    8   29       E        2   2   2   2   4   4   5   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     112       V     5    8   29       E        2   2   2   2   4   4   5   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     113       L     3    3   29       C        0   1   1   1   1   1   5   7   9  10  11  11  12  13  13  14  16  17  20  21  
 LCS     114       A     3    4   29       C        1   1   1   1   2   3   5   7   8   9  11  11  12  13  14  15  16  18  20  21  
 LCS     115       P     3    4   29       C        1   1   1   2   4   4   5   7   9  10  11  11  12  13  14  15  16  18  20  21  
 LCS     116       H     3    4   29       C        1   1   1   2   2   3   4   5   8   9  10  11  12  13  14  15  16  18  20  21  
 LCS     117       F     3    4   29       C        0   1   1   1   2   3   3   5   5   7   9  10  11  12  14  15  16  17  20  21  
 LCS     118       S     4    8   27       C        1   1   1   2   2   3   3   4   5   6   7   9   9  11  12  13  14  14  15  16  
 LCS     119       T     4    8   20       C        1   1   1   2   3   3   3   3   4   5   7   7   8   9  10  13  14  14  15  16  
 LCS     120       F     6    8   19       C        1   2   2   2   3   3   3   4   4   5   7   7   8   8   8   9   9  10  12  12  
 LCS     121       S     6    8   19       C        2   2   2   2   3   3   3   4   5   6   7   7   8   8   9  10  10  12  13  15  
 LCS     122       V     6    8   19       H        2   2   2   2   3   3   3   4   5   6   7   7   8   9   9  11  12  14  15  16  
 LCS     123       Q     6    8   19       H        2   2   2   2   3   3   3   4   5   6   7   7   8   9   9  10  12  12  14  16  
 LCS     124       S     6    8   15       H        2   2   2   2   3   3   3   4   5   6   7   7   8   8   9   9  10  10  12  12  
 LCS     125       Y     6    8   13       H        2   2   2   2   3   3   3   4   4   4   5   6   8   8   8   9   9  10  12  12  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.45 
 
 NUMBER_OF_CA_Tg:  221      NUMBER_OF_CA_Pr:  123      PERCENT_OF_CA:  55.66  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      11      11      12      13      13      15      16      20      23      25      27      29      29      32      34      36      40      45      48  
 GDT PERCENT_OF_CA_Pr    8.13    8.94    8.94    9.76   10.57   10.57   12.20   13.01   16.26   18.70   20.33   21.95   23.58   23.58   26.02   27.64   29.27   32.52   36.59   39.02 
 GDT PERCENT_OF_CA_Tg    4.52    4.98    4.98    5.43    5.88    5.88    6.79    7.24    9.05   10.41   11.31   12.22   13.12   13.12   14.48   15.38   16.29   18.10   20.36   21.72 
 GDT FRAGMENT: Beg-End  41-51   41-51   41-51   93-104  92-104  92-104  89-105  89-105  89-115  21-54   20-54   18-54   18-54   18-54   21-117  11-117  11-117  11-116  10-117  10-117 
 GDT RMS_LOCAL           0.30    0.33    0.33    1.34    1.46    1.46    2.27    2.52    3.42    3.70    3.95    4.14    4.37    4.37    5.70    5.92    6.11    6.84    7.22    7.53 
 GDT RMS_ALL_CA         37.75   37.73   37.73   23.31   22.71   22.71   23.15   23.64   24.76   30.96   32.59   32.78   32.65   32.65   15.98   15.92   15.80   15.32   15.19   15.14 
 
 
 TEST (CA)  RMS =  14.48               (Number of atoms:  123) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.48        123    55.7   221     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1177                            CRMSCA  
     SECONDARY STRUCTURE . .   13.76         83    56.1   148     CRMSCA  
     SURFACE . . . . . . . .   15.25         74    52.1   142     CRMSCA  
     BURIED  . . . . . . . .   13.23         49    62.0    79     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.64        604    55.3  1092     CRMSMC  
     SECONDARY STRUCTURE . .   13.92        410    55.7   736     CRMSMC  
     SURFACE . . . . . . . .   15.36        364    52.0   700     CRMSMC  
     BURIED  . . . . . . . .   13.49        240    61.2   392     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   14.95        112    12.4   901     CRMSSC  
     RELIABLE SIDE CHAINS  .   14.95        112    14.2   789     CRMSSC  
     SECONDARY STRUCTURE . .   14.12         78    12.6   617     CRMSSC  
     SURFACE . . . . . . . .   15.84         68    11.0   616     CRMSSC  
     BURIED  . . . . . . . .   13.45         44    15.4   285     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   14.64        604    33.8  1785     CRMSALL 
     SECONDARY STRUCTURE . .   13.92        410    33.9  1209     CRMSALL 
     SURFACE . . . . . . . .   15.36        364    30.7  1184     CRMSALL 
     BURIED  . . . . . . . .   13.49        240    39.9   601     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.422      1.000       0.500    123    55.7   221     ERRCA  
     SECONDARY STRUCTURE . .   12.703      1.000       0.500     83    56.1   148     ERRCA  
     SURFACE . . . . . . . .   14.186      1.000       0.500     74    52.1   142     ERRCA  
     BURIED  . . . . . . . .   12.269      1.000       0.500     49    62.0    79     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.555      1.000       0.500    604    55.3  1092     ERRMC  
     SECONDARY STRUCTURE . .   12.821      1.000       0.500    410    55.7   736     ERRMC  
     SURFACE . . . . . . . .   14.262      1.000       0.500    364    52.0   700     ERRMC  
     BURIED  . . . . . . . .   12.481      1.000       0.500    240    61.2   392     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.840      1.000       0.500    112    12.4   901     ERRSC  
     RELIABLE SIDE CHAINS  .   13.840      1.000       0.500    112    14.2   789     ERRSC  
     SECONDARY STRUCTURE . .   13.032      1.000       0.500     78    12.6   617     ERRSC  
     SURFACE . . . . . . . .   14.760      1.000       0.500     68    11.0   616     ERRSC  
     BURIED  . . . . . . . .   12.419      1.000       0.500     44    15.4   285     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.555      1.000       0.500    604    33.8  1785     ERRALL 
     SECONDARY STRUCTURE . .   12.821      1.000       0.500    410    33.9  1209     ERRALL 
     SURFACE . . . . . . . .   14.262      1.000       0.500    364    30.7  1184     ERRALL 
     BURIED  . . . . . . . .   12.481      1.000       0.500    240    39.9   601     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         1         5        40     123     221   DISTCA 
CA  (P)      0.00      0.45      0.45      2.26     18.10             221   DISTCA 
CA  (RMS)    0.00      1.82      1.82      3.72      7.80                   DISTCA 
 
ALL (N)         0         2         7        20       187     604    1785   DISTALL 
ALL (P)      0.00      0.11      0.39      1.12     10.48            1785   DISTALL 
ALL (RMS)    0.00      1.89      2.29      3.60      7.73                   DISTALL 
 
 
 
 
END of the results output 
