 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 18 , MODEL 18 , TARGET 312 
#          The number of residues possible to evaluate: 18 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   216     Q     H     C             1.00 
 SSP   217     A     C     H             1.00 
 SSP   218     D     C     H             1.00 
 SSP   219     G     H     H             1.00 
 SSP   220     N     H     H             1.00 
 SSP   221     A     H     H             1.00 
 SSP   222     L     H     H             1.00 
 SSP   223     K     H     H             1.00 
 SSP   224     A     H     H             1.00 
 SSP   225     A     H     H             1.00 
 SSP   226     A     H     H             1.00 
 SSP   227     E     H     H             1.00 
 SSP   228     A     H     H             1.00 
 SSP   229     H     H     H             1.00 
 SSP   230     H     H     H             1.00 
 SSP   231     K     H     H             1.00 
 SSP   232     A     H     H             1.00 
 SSP   233     I     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              77.8      87.5      0.0      0.0      5.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        83.3      93.8    100.0      0.0      5.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            2              50.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      18    100.0     77.8 
 
 BIN  0.00 - 1.00      1.00      18    100.0     77.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          18              18            18            312 
 ALL CONTACTS (< 8.0A)      62              59            62           1507 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS        62         58   93.55   98.31    3.85       0     0.00          59      1507  |   1-9999 
 RES CONTACTS        62         58   93.55  100.00    5.59       0     0.00          58      1037  |   1-4    
 RES CONTACTS         0          0    0.00    0.00    0.00       0     0.00           1        41  |   5-8    
 RES CONTACTS         0          0    0.00    0.00    0.00       0     0.00           0       429  |   9-9999 
 
 
 
# WARNING! TARGET 2282 atoms, MODEL 2244 atoms, 2244 common with TARGET 
           Number of atoms possible to evaluate: 89 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    40.48           94.1    34     5.5   622     ARMSMC  
     SECONDARY STRUCTURE . .     8.71          100.0    30     6.8   440     ARMSMC  
     SURFACE . . . . . . . .    41.23           94.1    17     4.0   424     ARMSMC  
     BURIED  . . . . . . . .    39.72           94.1    17     8.6   198     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   233     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   204     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   157     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   177     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   172     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   136     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   126     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   142     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    61     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    51     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    52     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    55     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    30     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    26     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  216 - 233  18   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    216 - 233      2.41     2.41 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  216 - 233  18   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17    217 - 233      1.70     2.60 
  LCS LOCAL_SCORE:             90.43 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  216 - 233  18   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    218 - 233      0.32     3.00 
  LCS LOCAL_SCORE:             80.86 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     216       Q     3    4   18       H        0   0   0   0   1   1   2   2   3   4   5   5   5   5   5   5   5   5   5   5  
 LCS     217       A     3   17   18       C        0   0   0   0   1   1   2   3   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     218       D    16   17   18       C        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     219       G    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     220       N    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     221       A    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     222       L    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     223       K    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     224       A    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     225       A    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     226       A    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     227       E    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     228       A    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     229       H    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     230       H    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     231       K    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     232       A    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS     233       I    16   17   18       H        5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5   5  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.27 
 
 NUMBER_OF_CA_Tg:  312      NUMBER_OF_CA_Pr:   18      PERCENT_OF_CA:   5.77  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      16      16      16      16      16      16      16      16      17      17      18      18      18      18      18      18      18      18      18      18  
 GDT PERCENT_OF_CA_Pr   88.89   88.89   88.89   88.89   88.89   88.89   88.89   88.89   94.44   94.44  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    5.13    5.13    5.13    5.13    5.13    5.13    5.13    5.13    5.45    5.45    5.77    5.77    5.77    5.77    5.77    5.77    5.77    5.77    5.77    5.77 
 GDT FRAGMENT: Beg-End 218-233 218-233 218-233 218-233 218-233 218-233 218-233 218-233 217-233 217-233 216-233 216-233 216-233 216-233 216-233 216-233 216-233 216-233 216-233 216-233 
 GDT RMS_LOCAL           0.32    0.32    0.32    0.32    0.32    0.32    0.32    0.32    1.70    1.70    2.41    2.41    2.41    2.41    2.41    2.41    2.41    2.41    2.41    2.41 
 GDT RMS_ALL_CA          3.00    3.00    3.00    3.00    3.00    3.00    3.00    3.00    2.60    2.60    2.41    2.41    2.41    2.41    2.41    2.41    2.41    2.41    2.41    2.41 
 
 
 TEST (CA)  RMS =   2.41               (Number of atoms:   18) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    2.41         18     5.8   312     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1341                            CRMSCA  
     SECONDARY STRUCTURE . .    2.16         16     7.3   220     CRMSCA  
     SURFACE . . . . . . . .    2.59          9     4.2   213     CRMSCA  
     BURIED  . . . . . . . .    2.22          9     9.1    99     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    2.45         89     5.8  1539     CRMSMC  
     SECONDARY STRUCTURE . .    2.17         79     7.3  1087     CRMSMC  
     SURFACE . . . . . . . .    2.69         45     4.3  1052     CRMSMC  
     BURIED  . . . . . . . .    2.18         44     9.0   487     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    3.24         17     1.6  1034     CRMSSC  
     RELIABLE SIDE CHAINS  .    3.24         17     1.9   876     CRMSSC  
     SECONDARY STRUCTURE . .    2.73         15     2.0   745     CRMSSC  
     SURFACE . . . . . . . .    3.68          9     1.2   778     CRMSSC  
     BURIED  . . . . . . . .    2.66          8     3.1   256     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    2.45         89     3.9  2282     CRMSALL 
     SECONDARY STRUCTURE . .    2.17         79     4.9  1625     CRMSALL 
     SURFACE . . . . . . . .    2.69         45     2.8  1630     CRMSALL 
     BURIED  . . . . . . . .    2.18         44     6.7   652     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.830      1.000       0.500     18     5.8   312     ERRCA  
     SECONDARY STRUCTURE . .    1.593      1.000       0.500     16     7.3   220     ERRCA  
     SURFACE . . . . . . . .    1.814      1.000       0.500      9     4.2   213     ERRCA  
     BURIED  . . . . . . . .    1.845      1.000       0.500      9     9.1    99     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.811      1.000       0.500     89     5.8  1539     ERRMC  
     SECONDARY STRUCTURE . .    1.577      1.000       0.500     79     7.3  1087     ERRMC  
     SURFACE . . . . . . . .    1.855      1.000       0.500     45     4.3  1052     ERRMC  
     BURIED  . . . . . . . .    1.767      1.000       0.500     44     9.0   487     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.267      1.000       0.500     17     1.6  1034     ERRSC  
     RELIABLE SIDE CHAINS  .    2.267      1.000       0.500     17     1.9   876     ERRSC  
     SECONDARY STRUCTURE . .    1.806      1.000       0.500     15     2.0   745     ERRSC  
     SURFACE . . . . . . . .    2.521      1.000       0.500      9     1.2   778     ERRSC  
     BURIED  . . . . . . . .    1.981      1.000       0.500      8     3.1   256     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    1.811      1.000       0.500     89     3.9  2282     ERRALL 
     SECONDARY STRUCTURE . .    1.577      1.000       0.500     79     4.9  1625     ERRALL 
     SURFACE . . . . . . . .    1.855      1.000       0.500     45     2.8  1630     ERRALL 
     BURIED  . . . . . . . .    1.767      1.000       0.500     44     6.7   652     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         5        13        16        17        18      18     312   DISTCA 
CA  (P)      1.60      4.17      5.13      5.45      5.77             312   DISTCA 
CA  (RMS)    0.48      1.20      1.55      1.92      2.41                   DISTCA 
 
ALL (N)        31        65        79        82        89      89    2282   DISTALL 
ALL (P)      1.36      2.85      3.46      3.59      3.90            2282   DISTALL 
ALL (RMS)    0.59      1.19      1.50      1.71      2.45                   DISTALL 
 
 
 
 
END of the results output 
