 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 64 , MODEL 64 , TARGET 312 
#          The number of residues possible to evaluate: 64 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    40     A     H     C             1.00 
 SSP    41     L     H     H             1.00 
 SSP    42     K     H     H             1.00 
 SSP    43     A     H     H             1.00 
 SSP    44     I     H     H             1.00 
 SSP    45     D     H     H             1.00 
 SSP    46     K     H     H             1.00 
 SSP    47     M     H     H             1.00 
 SSP    48     I     H     H             1.00 
 SSP    49     V     H     H             1.00 
 SSP    50     M     H     H             1.00 
 SSP    51     G     H     H             1.00 
 SSP    52     A     H     C             1.00 
 SSP  BREAK 
 SSP    59     L     H     C             1.00 
 SSP    60     K     H     H             1.00 
 SSP    61     A     H     H             1.00 
 SSP    62     A     H     H             1.00 
 SSP    63     A     H     H             1.00 
 SSP    64     E     H     H             1.00 
 SSP    65     A     H     H             1.00 
 SSP    66     H     H     H             1.00 
 SSP    67     H     H     H             1.00 
 SSP    68     K     H     H             1.00 
 SSP    69     A     H     H             1.00 
 SSP    70     I     H     C             1.00 
 SSP  BREAK 
 SSP    83     A     H     C             1.00 
 SSP    84     D     H     H             1.00 
 SSP    85     W     H     H             1.00 
 SSP    86     D     H     H             1.00 
 SSP    87     N     H     H             1.00 
 SSP    88     V     H     H             1.00 
 SSP    89     N     H     H             1.00 
 SSP    90     A     H     H             1.00 
 SSP    91     A     H     H             1.00 
 SSP    92     L     H     H             1.00 
 SSP    93     G     H     H             1.00 
 SSP    94     R     H     H             1.00 
 SSP    95     V     H     C             1.00 
 SSP  BREAK 
 SSP   107     V     H     C             1.00 
 SSP   108     Y     H     H             1.00 
 SSP   109     D     H     H             1.00 
 SSP   110     S     H     H             1.00 
 SSP   111     V     H     H             1.00 
 SSP   112     S     H     H             1.00 
 SSP   113     K     H     C             1.00 
 SSP  BREAK 
 SSP   130     A     H     C             1.00 
 SSP   131     D     H     H             1.00 
 SSP   132     A     H     H             1.00 
 SSP   133     E     H     H             1.00 
 SSP   134     K     H     H             1.00 
 SSP   135     A     H     H             1.00 
 SSP   136     Y     H     H             1.00 
 SSP   137     E     H     C             1.00 
 SSP  BREAK 
 SSP   139     F     H     C             1.00 
 SSP   140     L     H     H             1.00 
 SSP   141     A     H     H             1.00 
 SSP   142     F     H     H             1.00 
 SSP   143     K     H     H             1.00 
 SSP   144     D     H     H             1.00 
 SSP   145     V     H     H             1.00 
 SSP   146     V     H     H             1.00 
 SSP   147     K     H     H             1.00 
 SSP   148     K     H     H             1.00 
 SSP   149     S     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              81.2      81.2      0.0      0.0     20.5 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed       100.0     100.0    100.0    100.0     20.5 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            5             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      64    100.0     81.2 
 
 BIN  0.00 - 1.00      1.00      64    100.0     81.2 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          59              59            59            312 
 ALL CONTACTS (< 8.0A)     206             198           206           1507 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       206        164   79.61   82.83   10.88       0     0.00         198      1507  |   1-9999 
 RES CONTACTS       164        164  100.00   98.20   15.81       0     0.00         167      1037  |   1-4    
 RES CONTACTS         0          0    0.00    0.00    0.00       0     0.00           1        41  |   5-8    
 RES CONTACTS        42          0    0.00    0.00    0.00       0     0.00          30       429  |   9-9999 
 
 
 
# WARNING! TARGET 2282 atoms, MODEL 2110 atoms, 2110 common with TARGET 
           Number of atoms possible to evaluate: 313 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    18.51           94.0   116    18.6   622     ARMSMC  
     SECONDARY STRUCTURE . .    18.51           94.0   116    26.4   440     ARMSMC  
     SURFACE . . . . . . . .    20.80           92.9    70    16.5   424     ARMSMC  
     BURIED  . . . . . . . .    14.35           95.7    46    23.2   198     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   233     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   204     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   157     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   177     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   172     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   136     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   126     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   142     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    61     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    51     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    52     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    55     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    30     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    26     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   40 - 52   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     40 - 52       0.48     0.48 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   59 - 70   12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     59 - 70       0.44     0.44 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   83 - 95   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     83 - 95       0.71     0.71 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  107 - 113  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    107 - 113      0.33     0.33 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  130 - 137  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    130 - 137      0.56     0.56 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  139 - 149  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    139 - 149      0.74     0.74 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   40 - 52   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     40 - 52       0.48     0.48 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   59 - 70   12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     59 - 70       0.44     0.44 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   83 - 95   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     83 - 95       0.71     0.71 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  107 - 113  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    107 - 113      0.33     0.33 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  130 - 137  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    130 - 137      0.56     0.56 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  139 - 149  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    139 - 149      0.74     0.74 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   40 - 52   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     40 - 52       0.48     0.48 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   59 - 70   12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     59 - 70       0.44     0.44 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   83 - 95   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     83 - 95       0.71     0.71 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  107 - 113  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    107 - 113      0.33     0.33 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  130 - 137  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    130 - 137      0.56     0.56 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  139 - 149  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    139 - 149      0.74     0.74 
  LCS LOCAL_SCORE:            100.00 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      40       A    13   13   13       H        3   4   4   4   4   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS      41       L    13   13   13       H        1   4   4   4   4   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS      42       K    13   13   13       H        3   4   4   4   4   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS      43       A    13   13   13       H        3   4   4   4   4   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS      44       I    13   13   13       H        3   4   4   4   4   4   4   4   4   5   5   6   7   7   7   8   8   9  10  11  
 LCS      45       D    13   13   13       H        3   4   4   4   4   4   4   4   4   4   5   6   7   7   7   8   8   8   9  10  
 LCS      46       K    13   13   13       H        3   4   4   4   4   4   4   4   4   4   5   6   7   7   7   8   8   9   9  10  
 LCS      47       M    13   13   13       H        3   4   4   4   4   4   4   4   4   4   4   5   5   6   6   7   8   8   8   9  
 LCS      48       I    13   13   13       H        3   4   4   4   4   4   4   4   4   4   4   5   6   6   6   7   7   7   8   8  
 LCS      49       V    13   13   13       H        3   4   4   4   4   4   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      50       M    13   13   13       H        3   4   4   4   4   4   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      51       G    13   13   13       H        3   4   4   4   4   4   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      52       A    13   13   13       H        3   4   4   4   4   4   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      53       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      54       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      55       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      56       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      57       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      58       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      59       L    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      60       K    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      61       A    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      62       A    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      63       A    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      64       E    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      65       A    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      66       H    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      67       H    12   12   12       H        2   3   3   3   3   3   4   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      68       K    12   12   12       H        2   3   3   3   3   3   3   3   3   4   5   6   6   6   6   7   7   7   8   8  
 LCS      69       A    12   12   12       H        2   3   3   3   3   3   3   3   3   3   5   6   6   6   6   7   7   7   8   8  
 LCS      70       I    12   12   12       H        2   3   3   3   3   3   3   4   4   4   5   6   6   6   6   7   7   7   8   8  
 LCS      71       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      72       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      73       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      74       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      75       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      76       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      77       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      78       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      79       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      80       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      81       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      82       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      83       A    13   13   13       H        0   3   4   4   4   4   4   4   4   4   5   5   5   5   5   5   6   6   6   6  
 LCS      84       D    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   5   5   5   5   5   6   6   6   6  
 LCS      85       W    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   5   5   5   5   5   6   6   6   6  
 LCS      86       D    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   5   5   5   5   5   6   6   8  10  
 LCS      87       N    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   5   5   5   7   7   8   9  10  11  
 LCS      88       V    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   5   5   5   7   7   7   9  10  11  
 LCS      89       N    13   13   13       H        2   3   4   4   4   4   4   4   4   5   5   6   7   7   8   8   8   9  10  11  
 LCS      90       A    13   13   13       H        2   3   4   4   4   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS      91       A    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   6   6   7   8   8   8   9  10  11  
 LCS      92       L    13   13   13       H        2   3   4   4   4   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS      93       G    13   13   13       H        2   3   4   4   4   4   4   4   4   5   6   6   7   7   8   8   8   9  10  11  
 LCS      94       R    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   5   6   6   6   6   7   8   9   9  
 LCS      95       V    13   13   13       H        2   3   4   4   4   4   4   4   4   4   5   5   6   6   6   6   6   7   9   9  
 LCS      96       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      97       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      98       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      99       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     100       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     101       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     102       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     103       M     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     104       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     105       M     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     106       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     107       V     7    7    7       H        2   2   2   2   2   2   3   3   3   3   4   5   6   6   7   7   8   9  10  11  
 LCS     108       Y     7    7    7       H        2   2   2   2   2   2   2   2   2   3   4   5   6   6   6   7   7   9  10  11  
 LCS     109       D     7    7    7       H        2   2   2   2   2   2   2   3   3   4   5   6   6   7   8   8   8   9  10  11  
 LCS     110       S     7    7    7       H        2   2   2   2   2   2   2   2   2   2   3   5   6   6   6   7   7   7  10  11  
 LCS     111       V     7    7    7       H        2   2   2   2   2   2   2   3   3   3   4   6   6   6   6   7   7   7   8   8  
 LCS     112       S     7    7    7       H        2   2   2   2   3   3   4   4   4   4   5   6   6   6   6   7   7   7  10  11  
 LCS     113       K     7    7    7       H        2   2   2   2   2   2   2   2   2   4   5   6   6   6   6   7   7   7  10  11  
 LCS     114       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     115       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     116       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     117       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     118       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     119       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     120       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     121       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     122       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     123       M     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     124       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     125       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     126       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     127       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     128       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     129       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     130       A     8    8    8       H        1   2   2   2   2   2   2   3   3   3   4   5   6   6   6   7   7   7   8   9  
 LCS     131       D     8    8    8       H        1   2   2   2   2   2   3   3   3   3   4   5   6   6   6   7   8   8   9  10  
 LCS     132       A     8    8    8       H        1   2   2   2   2   2   3   3   3   3   4   6   6   7   8   8   8   9  10  11  
 LCS     133       E     8    8    8       H        1   2   2   2   2   2   3   4   4   5   5   6   7   7   8   8   8   9  10  11  
 LCS     134       K     8    8    8       H        1   2   2   2   2   2   3   4   4   5   5   6   7   7   8   8   8   9  10  11  
 LCS     135       A     8    8    8       H        1   2   2   2   3   3   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     136       Y     8    8    8       H        1   2   2   2   3   3   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     137       E     8    8    8       H        1   2   2   2   3   3   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     138       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     139       F    11   11   11       H        1   1   3   3   3   4   4   4   4   5   5   6   6   7   8   8   8   9  10  11  
 LCS     140       L    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     141       A    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     142       F    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     143       K    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     144       D    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     145       V    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     146       V    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     147       K    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     148       K    11   11   11       H        2   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS     149       S    11   11   11       H        1   3   3   3   3   4   4   4   5   6   6   6   7   7   8   8   8   9  10  11  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.74 
 
 NUMBER_OF_CA_Tg:  312      NUMBER_OF_CA_Pr:   64      PERCENT_OF_CA:  20.51  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      12      13      13      13      14      14      14      15      17      19      20      21      22      23      26      27      28      30      33      35  
 GDT PERCENT_OF_CA_Pr   18.75   20.31   20.31   20.31   21.88   21.88   21.88   23.44   26.56   29.69   31.25   32.81   34.38   35.94   40.62   42.19   43.75   46.88   51.56   54.69 
 GDT PERCENT_OF_CA_Tg    3.85    4.17    4.17    4.17    4.49    4.49    4.49    4.81    5.45    6.09    6.41    6.73    7.05    7.37    8.33    8.65    8.97    9.62   10.58   11.22 
 GDT FRAGMENT: Beg-End  40-52   40-52   40-52   40-52   42-95   42-95   42-95   45-149  40-149  40-149  40-149  40-149  40-149  40-149  40-149  40-149  40-149  40-149  40-149  40-149 
 GDT RMS_LOCAL           0.33    0.48    0.48    0.48    0.48    1.10    1.10    2.16    3.16    3.44    3.56    3.93    4.00    4.20    4.83    5.00    5.22    5.73    6.30    6.64 
 GDT RMS_ALL_CA         30.23   30.52   30.52   30.52   30.52   22.77   22.77   17.84   18.01   18.07   18.22   17.95   18.17   18.10   18.15   18.14   17.66   17.67   17.46   17.54 
 
 
 TEST (CA)  RMS =  13.49               (Number of atoms:   64) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   13.49         64    20.5   312     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2108                            CRMSCA  
     SECONDARY STRUCTURE . .   13.49         64    29.1   220     CRMSCA  
     SURFACE . . . . . . . .   13.28         39    18.3   213     CRMSCA  
     BURIED  . . . . . . . .   13.82         25    25.3    99     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   13.55        313    20.3  1539     CRMSMC  
     SECONDARY STRUCTURE . .   13.55        313    28.8  1087     CRMSMC  
     SURFACE . . . . . . . .   13.36        191    18.2  1052     CRMSMC  
     BURIED  . . . . . . . .   13.85        122    25.1   487     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   14.36         57     5.5  1034     CRMSSC  
     RELIABLE SIDE CHAINS  .   14.36         57     6.5   876     CRMSSC  
     SECONDARY STRUCTURE . .   14.36         57     7.7   745     CRMSSC  
     SURFACE . . . . . . . .   14.32         35     4.5   778     CRMSSC  
     BURIED  . . . . . . . .   14.42         22     8.6   256     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   13.55        313    13.7  2282     CRMSALL 
     SECONDARY STRUCTURE . .   13.55        313    19.3  1625     CRMSALL 
     SURFACE . . . . . . . .   13.36        191    11.7  1630     CRMSALL 
     BURIED  . . . . . . . .   13.85        122    18.7   652     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.473      1.000       0.500     64    20.5   312     ERRCA  
     SECONDARY STRUCTURE . .   12.473      1.000       0.500     64    29.1   220     ERRCA  
     SURFACE . . . . . . . .   12.089      1.000       0.500     39    18.3   213     ERRCA  
     BURIED  . . . . . . . .   13.071      1.000       0.500     25    25.3    99     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.507      1.000       0.500    313    20.3  1539     ERRMC  
     SECONDARY STRUCTURE . .   12.507      1.000       0.500    313    28.8  1087     ERRMC  
     SURFACE . . . . . . . .   12.130      1.000       0.500    191    18.2  1052     ERRMC  
     BURIED  . . . . . . . .   13.097      1.000       0.500    122    25.1   487     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.185      1.000       0.500     57     5.5  1034     ERRSC  
     RELIABLE SIDE CHAINS  .   13.185      1.000       0.500     57     6.5   876     ERRSC  
     SECONDARY STRUCTURE . .   13.185      1.000       0.500     57     7.7   745     ERRSC  
     SURFACE . . . . . . . .   12.924      1.000       0.500     35     4.5   778     ERRSC  
     BURIED  . . . . . . . .   13.600      1.000       0.500     22     8.6   256     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.507      1.000       0.500    313    13.7  2282     ERRALL 
     SECONDARY STRUCTURE . .   12.507      1.000       0.500    313    19.3  1625     ERRALL 
     SURFACE . . . . . . . .   12.130      1.000       0.500    191    11.7  1630     ERRALL 
     BURIED  . . . . . . . .   13.097      1.000       0.500    122    18.7   652     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         2         6        21      64     312   DISTCA 
CA  (P)      0.00      0.00      0.64      1.92      6.73             312   DISTCA 
CA  (RMS)    0.00      0.00      2.34      3.70      6.64                   DISTCA 
 
ALL (N)         0         0         8        28       108     313    2282   DISTALL 
ALL (P)      0.00      0.00      0.35      1.23      4.73            2282   DISTALL 
ALL (RMS)    0.00      0.00      2.57      3.55      6.79                   DISTALL 
 
 
 
 
END of the results output 
