 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 1 1 , MODEL 1 , TARGET 312 
 
# WARNING! TARGET 2282 atoms, MODEL 2278 atoms, 2278 common with TARGET 
           Number of atoms possible to evaluate: 4 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   622     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   440     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   424     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   198     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   233     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   204     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   157     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   177     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   172     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   136     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   126     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   142     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    61     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    51     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    52     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    55     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    30     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    26     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      38       L     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.00 
 
 NUMBER_OF_CA_Tg:  312      NUMBER_OF_CA_Pr:    1      PERCENT_OF_CA:   0.32  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0       0  
 GDT PERCENT_OF_CA_Pr    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 GDT PERCENT_OF_CA_Tg    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 GDT FRAGMENT: Beg-End   0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0     0-0   
 GDT RMS_LOCAL           0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 GDT RMS_ALL_CA          0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00    0.00 
 
 
 TEST (CA)  RMS =   0.00               (Number of atoms:    1) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          1     0.3   312     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0000                            CRMSCA  
     SECONDARY STRUCTURE . .    0.00          1     0.5   220     CRMSCA  
     SURFACE . . . . . . . .    0.00          1     0.5   213     CRMSCA  
     BURIED  . . . . . . . .    0.00          0     0.0    99     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    2.78          4     0.3  1539     CRMSMC  
     SECONDARY STRUCTURE . .    2.78          4     0.4  1087     CRMSMC  
     SURFACE . . . . . . . .    2.78          4     0.4  1052     CRMSMC  
     BURIED  . . . . . . . .    0.00          0     0.0   487     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0  1034     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   876     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   745     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   778     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   256     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    2.78          4     0.2  2282     CRMSALL 
     SECONDARY STRUCTURE . .    2.78          4     0.2  1625     CRMSALL 
     SURFACE . . . . . . . .    2.78          4     0.2  1630     CRMSALL 
     BURIED  . . . . . . . .    0.00          0     0.0   652     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      1.000       0.500      1     0.3   312     ERRCA  
     SECONDARY STRUCTURE . .    0.000      1.000       0.500      1     0.5   220     ERRCA  
     SURFACE . . . . . . . .    0.000      1.000       0.500      1     0.5   213     ERRCA  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0    99     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.173      1.000       0.500      4     0.3  1539     ERRMC  
     SECONDARY STRUCTURE . .    2.173      1.000       0.500      4     0.4  1087     ERRMC  
     SURFACE . . . . . . . .    2.173      1.000       0.500      4     0.4  1052     ERRMC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   487     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0  1034     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   876     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   745     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   778     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   256     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.173      1.000       0.500      4     0.2  2282     ERRALL 
     SECONDARY STRUCTURE . .    2.173      1.000       0.500      4     0.2  1625     ERRALL 
     SURFACE . . . . . . . .    2.173      1.000       0.500      4     0.2  1630     ERRALL 
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   652     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         1         1         1         1       1     312   DISTCA 
CA  (P)      0.32      0.32      0.32      0.32      0.32             312   DISTCA 
CA  (RMS)    0.00      0.00      0.00      0.00      0.00                   DISTCA 
 
ALL (N)         1         2         2         4         4       4    2282   DISTALL 
ALL (P)      0.04      0.09      0.09      0.18      0.18            2282   DISTALL 
ALL (RMS)    0.00      0.80      0.80      2.78      2.78                   DISTALL 
 
 
 
 
END of the results output 
