 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 151 , MODEL 151 , TARGET 312 
#          The number of residues possible to evaluate: 151 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   161     P     C     C             1.00 
 SSP   162     S     C     C             1.00 
 SSP   163     G     C     C             1.00 
 SSP   164     D     C     C             1.00 
 SSP   165     K     H     C             1.00 
 SSP   166     I     H     H             1.00 
 SSP   167     G     H     H             1.00 
 SSP   168     V     H     H             1.00 
 SSP   169     A     H     H             1.00 
 SSP   170     A     H     H             1.00 
 SSP   171     Q     H     H             1.00 
 SSP   172     Q     H     H             1.00 
 SSP   173     L     H     H             1.00 
 SSP   174     S     H     H             1.00 
 SSP   175     E     H     H             1.00 
 SSP   176     A     H     H             1.00 
 SSP   177     S     H     H             1.00 
 SSP   178     Y     H     H             1.00 
 SSP   179     P     H     H             1.00 
 SSP   180     F     H     H             1.00 
 SSP   181     L     H     H             1.00 
 SSP   182     K     H     H             1.00 
 SSP   183     E     H     H             1.00 
 SSP   184     I     C     H             1.00 
 SSP   185     D     C     H             1.00 
 SSP   186     W     C     H             1.00 
 SSP   187     L     C     H             1.00 
 SSP   188     S     C     H             1.00 
 SSP   189     D     C     H             1.00 
 SSP   190     V     H     H             1.00 
 SSP   191     Y     H     H             1.00 
 SSP   192     M     H     H             1.00 
 SSP   193     K     C     C             1.00 
 SSP   194     P     C     C             1.00 
 SSP  BREAK 
 SSP   196     P     C     C             1.00 
 SSP   197     G     C     C             1.00 
 SSP   198     V     C     C             1.00 
 SSP   199     S     C     C             1.00 
 SSP   200     A     H     C             1.00 
 SSP   201     Q     H     H             1.00 
 SSP   202     Q     H     H             1.00 
 SSP   203     S     H     H             1.00 
 SSP   204     L     H     H             1.00 
 SSP   205     K     H     H             1.00 
 SSP   206     A     H     H             1.00 
 SSP   207     I     H     H             1.00 
 SSP   208     D     H     H             1.00 
 SSP   209     K     H     H             1.00 
 SSP   210     M     H     H             1.00 
 SSP   211     I     H     H             1.00 
 SSP   212     V     H     H             1.00 
 SSP   213     M     H     H             1.00 
 SSP   214     G     H     H             1.00 
 SSP   215     A     H     H             1.00 
 SSP   216     Q     H     H             1.00 
 SSP   217     A     C     H             1.00 
 SSP   218     D     C     H             1.00 
 SSP   219     G     H     H             1.00 
 SSP   220     N     H     H             1.00 
 SSP   221     A     H     H             1.00 
 SSP   222     L     H     H             1.00 
 SSP   223     K     H     H             1.00 
 SSP   224     A     H     H             1.00 
 SSP   225     A     H     H             1.00 
 SSP   226     A     H     H             1.00 
 SSP   227     E     H     H             1.00 
 SSP   228     A     H     C             1.00 
 SSP   229     H     H     C             1.00 
 SSP   230     H     H     C             1.00 
 SSP   231     K     H     C             1.00 
 SSP   232     A     H     C             1.00 
 SSP   233     I     H     C             1.00 
 SSP   234     G     H     C             1.00 
 SSP   235     S     C     C             1.00 
 SSP   236     I     C     C             1.00 
 SSP   237     D     C     C             1.00 
 SSP   238     A     C     C             1.00 
 SSP   239     T     C     C             1.00 
 SSP   240     G     C     C             1.00 
 SSP   241     V     C     C             1.00 
 SSP   242     T     C     C             1.00 
 SSP   243     S     C     C             1.00 
 SSP   244     A     H     C             1.00 
 SSP   245     A     H     C             1.00 
 SSP   246     D     H     C             1.00 
 SSP   247     Y     H     C             1.00 
 SSP   248     A     H     H             1.00 
 SSP   249     A     H     H             1.00 
 SSP   250     V     H     H             1.00 
 SSP   251     N     H     H             1.00 
 SSP   252     A     H     H             1.00 
 SSP   253     A     H     H             1.00 
 SSP   254     L     H     H             1.00 
 SSP   255     G     H     H             1.00 
 SSP   256     R     H     H             1.00 
 SSP   257     V     H     H             1.00 
 SSP   258     I     H     H             1.00 
 SSP   259     A     C     H             1.00 
 SSP   260     S     C     H             1.00 
 SSP   261     V     C     H             1.00 
 SSP   262     P     C     H             1.00 
 SSP   263     K     H     H             1.00 
 SSP   264     S     H     H             1.00 
 SSP   265     T     H     H             1.00 
 SSP   266     V     H     H             1.00 
 SSP   267     M     H     H             1.00 
 SSP   268     D     H     H             1.00 
 SSP   269     V     H     H             1.00 
 SSP   270     Y     H     H             1.00 
 SSP   271     N     H     H             1.00 
 SSP   272     A     H     H             1.00 
 SSP   273     M     H     H             1.00 
 SSP   274     A     H     H             1.00 
 SSP   275     G     H     H             1.00 
 SSP   276     V     H     C             1.00 
 SSP   277     T     C     C             1.00 
 SSP   278     D     C     C             1.00 
 SSP   279     T     C     C             1.00 
 SSP   280     S     H     H             1.00 
 SSP   281     I     H     H             1.00 
 SSP   282     P     H     H             1.00 
 SSP   283     L     H     H             1.00 
 SSP   284     N     H     H             1.00 
 SSP   285     M     H     H             1.00 
 SSP   286     F     H     H             1.00 
 SSP   287     S     H     C             1.00 
 SSP   288     K     C     C             1.00 
 SSP   289     V     C     H             1.00 
 SSP   290     N     C     H             1.00 
 SSP   291     P     H     H             1.00 
 SSP   292     L     H     H             1.00 
 SSP   293     D     H     H             1.00 
 SSP   294     A     H     H             1.00 
 SSP   295     N     H     H             1.00 
 SSP   296     A     H     H             1.00 
 SSP   297     A     H     H             1.00 
 SSP   298     A     H     H             1.00 
 SSP   299     K     H     H             1.00 
 SSP   300     A     H     H             1.00 
 SSP   301     F     H     H             1.00 
 SSP   302     Y     H     H             1.00 
 SSP   303     T     H     H             1.00 
 SSP   304     F     H     H             1.00 
 SSP   305     K     H     H             1.00 
 SSP   306     D     H     H             1.00 
 SSP   307     V     H     H             1.00 
 SSP   308     V     H     H             1.00 
 SSP   309     Q     H     H             1.00 
 SSP   310     A     H     H             1.00 
 SSP   311     A     H     H             1.00 
 SSP   312     Q     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              80.8      86.7      0.0     63.2     48.4 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        72.7      78.3    100.0     56.2     48.4 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 3 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     151    100.0     80.8 
 
 BIN  0.00 - 1.00      1.00     151    100.0     80.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         146             146           146            312 
 ALL CONTACTS (< 8.0A)     662             638           662           1507 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       662        430   64.95   67.40   28.53       0     0.00         638      1507  |   1-9999 
 RES CONTACTS       479        428   89.35   91.26   41.27       0     0.00         469      1037  |   1-4    
 RES CONTACTS        17          0    0.00    0.00    0.00       0     0.00          20        41  |   5-8    
 RES CONTACTS       166          2    1.20    1.34    0.47       0     0.00         149       429  |   9-9999 
 
 
 
# WARNING! TARGET 2282 atoms, MODEL 1926 atoms, 1926 common with TARGET 
           Number of atoms possible to evaluate: 741 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    57.83           74.5   298    47.9   622     ARMSMC  
     SECONDARY STRUCTURE . .    36.54           87.7   220    50.0   440     ARMSMC  
     SURFACE . . . . . . . .    57.95           73.0   200    47.2   424     ARMSMC  
     BURIED  . . . . . . . .    57.59           77.6    98    49.5   198     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   233     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   204     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   157     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   177     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   172     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   136     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   126     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   142     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    61     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    51     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    52     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    55     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    30     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    30     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    26     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  161 - 194  34   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    29    163 - 191      4.98     7.55 
  LCS LOCAL_SCORE:             84.34 
 
 FRAGMENT  2  196 - 312  117  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    30    196 - 225      4.68    23.58 
  LONGEST_CONTINUOUS_SEGMENT    30    197 - 226      4.93    22.60 
  LONGEST_CONTINUOUS_SEGMENT    30    255 - 284      4.93    22.08 
  LCS LOCAL_SCORE:             24.41 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  161 - 194  34   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    165 - 184      1.87    10.73 
  LONGEST_CONTINUOUS_SEGMENT    20    166 - 185      2.00    10.07 
  LCS LOCAL_SCORE:             43.94 
 
 FRAGMENT  2  196 - 312  117  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    24    289 - 312      1.74    28.46 
  LCS LOCAL_SCORE:             14.48 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  161 - 194  34   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14    165 - 178      0.64    13.64 
  LONGEST_CONTINUOUS_SEGMENT    14    166 - 179      0.99    12.66 
  LCS LOCAL_SCORE:             25.87 
 
 FRAGMENT  2  196 - 312  117  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23    290 - 312      0.95    28.67 
  LCS LOCAL_SCORE:             12.43 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     161       P     0    3   28       C        0   0   0   0   0   0   0   1   1   1   1   6   7   7   8  11  13  14  16  17  
 LCS     162       S     0    3   28       C        0   0   0   0   0   0   0   1   1   1   1   3   6   7   7   8   9  10  12  15  
 LCS     163       G     0    3   29       C        0   0   0   0   0   0   1   6   6   6   7   8   8   8  11  12  13  14  16  17  
 LCS     164       D     0   18   29       C        0   0   0   0   0   0   1   6   7   7   7   8   9  10  11  12  13  14  16  17  
 LCS     165       K    14   20   29       H        3   4   4   5   5   6   6   6   7   7   8  10  10  10  11  12  13  14  16  17  
 LCS     166       I    14   20   29       H        3   4   4   5   5   6   6   6   7   7   8  10  10  10  11  12  13  14  16  17  
 LCS     167       G    14   20   29       H        3   4   4   5   5   6   6   6   7   7   8  10  10  10  11  12  13  14  16  17  
 LCS     168       V    14   20   29       H        3   4   4   5   5   6   6   6   7   7   8   9  10  10  11  12  13  14  16  17  
 LCS     169       A    14   20   29       H        3   4   4   5   5   6   6   6   7   7   8  10  10  10  11  12  13  14  16  17  
 LCS     170       A    14   20   29       H        3   4   4   5   5   6   6   6   7   7   8  10  10  10  11  12  13  14  16  17  
 LCS     171       Q    14   20   29       H        3   4   4   5   5   6   6   6   7   7   7   8   8  10  11  12  13  14  16  17  
 LCS     172       Q    14   20   29       H        3   4   4   5   5   6   6   6   7   7   7   8   8   8   8   9   9  10  13  17  
 LCS     173       L    14   20   29       H        3   4   4   5   5   6   6   6   7   7   7   9  10  10  11  12  13  14  16  17  
 LCS     174       S    14   20   29       H        3   4   4   5   5   6   6   6   7   7   7   8   8   9  10  12  13  14  16  17  
 LCS     175       E    14   20   29       H        3   4   4   5   5   6   6   6   7   7   7   8   8   8   8   9   9  10  10  10  
 LCS     176       A    14   20   29       H        3   4   4   5   5   6   6   6   7   7   7   8   8   8   8   9   9  10  10  10  
 LCS     177       S    14   20   29       H        2   4   4   5   5   6   6   6   7   7   7   8   8   8   8  10  12  14  16  17  
 LCS     178       Y    14   20   29       H        2   3   4   5   5   6   6   6   7   7   7   8   8   8   8   9   9  10  12  13  
 LCS     179       P    14   20   29       H        2   2   3   5   5   6   6   6   7   7   7   8   8   8   8   9   9  10  10  10  
 LCS     180       F     9   20   29       H        2   2   3   5   5   6   6   6   7   7   7   8   8   8   8   9   9  10  12  13  
 LCS     181       L     9   20   29       H        2   2   3   5   5   6   6   6   7   7   7   8   8   8   8   9   9  12  14  16  
 LCS     182       K     9   20   29       H        2   2   3   4   5   6   6   6   7   7   7   8   8   8   8   9   9  10  10  11  
 LCS     183       E     9   20   29       H        2   2   3   4   5   6   6   6   7   7   7   8   8   8   8   9   9  10  10  11  
 LCS     184       I     9   20   29       C        2   2   3   4   5   6   6   6   7   7   7   8   8   8   8   9  10  13  15  16  
 LCS     185       D     4   20   29       C        1   1   1   2   4   5   6   6   7   7   7   8   8   8   8   9   9  10  12  13  
 LCS     186       W     4    5   29       C        1   1   1   1   1   3   4   5   6   7   7   8   8   8   8   9   9  10  12  16  
 LCS     187       L     4    7   29       C        1   1   1   1   2   2   2   3   3   5   5   6   7   8   8   9   9  12  14  16  
 LCS     188       S     4    7   29       C        1   1   1   1   3   4   5   6   6   7   7   8   8   8   8   9   9  11  12  16  
 LCS     189       D     5    7   29       C        1   1   1   1   2   2   2   4   5   7   7   8   8   8   8   9   9  11  12  14  
 LCS     190       V     5    7   29       H        1   1   1   1   2   2   3   4   4   6   6   8   8   8  10  11  12  14  16  17  
 LCS     191       Y     5    7   29       H        1   1   1   1   2   2   3   4   4   6   6   8   8   9  10  12  13  14  16  17  
 LCS     192       M     5    7   28       H        1   1   1   1   2   2   3   4   4   6   6   8   8   8  10  11  13  14  16  17  
 LCS     193       K     5    7   26       C        1   1   1   1   2   2   2   3   4   4   5   5   8   9  10  11  13  14  16  17  
 LCS     194       P     3    7   24       C        0   0   0   1   3   4   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     195       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     196       P     3    5   30       C        0   0   0   1   2   3   3   3   6   7   8   9   9   9  10  11  13  13  15  17  
 LCS     197       G     4    5   30       C        0   1   1   1   2   4   5   6   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     198       V     4    5   30       C        0   1   1   2   3   4   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     199       S     4   21   30       C        0   1   1   3   5   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     200       A    19   21   30       H        2   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     201       Q    19   21   30       H        2   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     202       Q    19   21   30       H        2   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     203       S    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     204       L    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     205       K    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     206       A    19   21   30       H        2   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     207       I    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     208       D    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     209       K    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     210       M    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     211       I    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     212       V    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     213       M    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     214       G    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     215       A    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8   9   9   9  10  11  13  14  15  16  
 LCS     216       Q    19   21   30       H        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     217       A    19   21   30       C        3   4   5   5   6   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     218       D    19   21   30       C        3   3   3   3   6   6   6   7   7   8   8   9   9  10  11  11  13  14  15  16  
 LCS     219       G    12   21   30       H        3   3   3   4   5   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     220       N    12   13   30       H        3   3   3   3   3   3   5   6   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     221       A    12   13   30       H        3   3   3   4   5   6   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     222       L    12   13   30       H        3   3   3   3   3   3   4   5   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     223       K    12   13   30       H        3   3   3   3   3   3   4   5   6   7   8  10  10  10  11  12  13  14  16  17  
 LCS     224       A    12   13   30       H        3   3   3   3   3   3   4   4   5   6   8   9  10  10  11  12  13  14  16  17  
 LCS     225       A    12   13   30       H        3   3   3   3   3   3   4   4   5   5   6   8   9  10  11  12  13  14  16  17  
 LCS     226       A    12   13   30       H        3   3   3   3   3   3   4   4   5   5   6   6   7   7   8   9  10  11  14  16  
 LCS     227       E    12   13   24       H        3   3   3   3   3   3   4   4   5   5   6   6   7   7   8   9  12  12  13  15  
 LCS     228       A    12   13   24       H        3   3   3   3   3   3   4   4   5   5   6   6   7   7   8   8  10  11  11  12  
 LCS     229       H    12   13   24       H        3   3   3   3   3   3   4   4   5   5   5   6   6   7   7   8   8   9   9   9  
 LCS     230       H     3   13   24       H        0   0   0   1   2   2   4   4   5   5   6   6   7   7   8   8  10  11  11  12  
 LCS     231       K     3    4   24       H        0   0   1   1   1   2   2   3   4   5   6   8   8   9   9  11  12  14  15  17  
 LCS     232       A     3    3   24       H        0   0   0   1   1   1   1   2   3   5   6   8   8   9  10  12  13  14  16  17  
 LCS     233       I     3    3   24       H        0   0   0   0   0   2   3   3   5   5   7   8   8   9   9  10  13  14  16  17  
 LCS     234       G     3    5   16       H        0   0   0   1   1   2   2   3   3   6   6   8   8   9  10  12  13  14  16  17  
 LCS     235       S     4    5   16       C        1   1   1   1   2   2   2   3   3   6   6   7   8   9  11  12  13  14  16  17  
 LCS     236       I     4    5   16       C        1   1   1   1   2   2   2   3   3   5   6   7   8  10  11  12  13  14  16  17  
 LCS     237       D     4    5   18       C        1   1   1   1   1   2   2   3   4   5   5   6   7   7   8   8  10  13  15  16  
 LCS     238       A     4    5   19       C        1   1   1   1   1   2   3   3   4   5   6   6   7   7   8   9   9  12  14  16  
 LCS     239       T     4    5   20       C        0   1   1   1   2   2   3   4   4   5   6   6   7   7   8  10  12  14  15  16  
 LCS     240       G     4    5   21       C        0   1   1   1   1   2   3   4   4   5   6   6   7   7   8   9  10  12  14  16  
 LCS     241       V     4    5   29       C        0   1   1   1   1   2   3   4   4   5   6   6   7   8   9   9  10  11  12  15  
 LCS     242       T     4    5   29       C        0   0   1   1   1   2   3   4   4   5   7   7   8   8   9   9  10  10  14  14  
 LCS     243       S     4    5   29       C        0   0   1   1   1   2   3   4   4   5   7   7   8   8   9   9  11  12  14  14  
 LCS     244       A     4    5   29       H        0   0   1   1   1   2   3   4   5   6   7   7   8   8   9   9  10  10  14  14  
 LCS     245       A     3    4   29       H        0   0   0   1   1   2   3   4   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     246       D     3   18   29       H        0   1   2   3   3   5   5   6   6   6   7   7   8   8   9   9  11  12  14  14  
 LCS     247       Y    16   18   29       H        4   4   4   5   5   5   5   6   6   6   6   7   8   8   8   9   9  10  10  11  
 LCS     248       A    16   18   29       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     249       A    16   18   29       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     250       V    16   18   29       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9   9  11  13  14  14  
 LCS     251       N    16   18   29       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     252       A    16   18   29       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     253       A    16   18   29       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     254       L    16   18   29       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     255       G    16   18   30       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     256       R    16   18   30       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  13  14  
 LCS     257       V    16   18   30       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     258       I    16   18   30       H        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  13  14  
 LCS     259       A    16   18   30       C        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9   9  10  11  13  14  
 LCS     260       S    16   18   30       C        4   4   4   5   5   5   5   6   6   6   7   7   8   8   9   9  10  10  12  13  
 LCS     261       V    16   18   30       C        1   4   4   5   5   5   5   6   6   6   7   7   8   8   9   9  10  11  12  13  
 LCS     262       P    16   18   30       C        2   3   5   5   5   5   5   6   7   8   8   9   9   9  10  11  13  13  14  15  
 LCS     263       K    16   18   30       H        2   4   5   5   5   5   6   7   7   8   8  10  10  10  11  12  13  14  16  17  
 LCS     264       S    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8  10  11  13  13  14  15  
 LCS     265       T    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9   9  10  11  12  13  
 LCS     266       V    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  11  13  13  15  16  
 LCS     267       M    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     268       D    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     269       V    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     270       Y    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     271       N    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     272       A    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     273       M    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     274       A    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     275       G    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     276       V    16   18   30       H        3   4   5   5   5   5   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     277       T    16   18   30       C        2   4   5   5   5   5   5   6   6   6   7   7   8   8   9   9  10  11  14  14  
 LCS     278       D    10   18   30       C        1   2   3   3   4   4   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     279       T    10   18   30       C        1   2   3   3   4   4   5   6   6   6   7   7   8   8   9  10  11  13  14  14  
 LCS     280       S    10   14   30       H        2   2   3   3   4   4   4   5   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     281       I    10   14   30       H        2   2   3   3   4   4   4   5   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     282       P    10   14   30       H        2   2   3   3   4   4   4   5   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     283       L    10   14   30       H        2   2   3   3   4   4   4   5   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     284       N    10   14   30       H        2   2   3   3   4   4   4   5   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     285       M    10   14   29       H        2   2   3   3   4   4   4   5   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     286       F    10   14   29       H        2   2   3   3   4   4   4   5   5   6   7   7   8   8   9  10  11  13  14  14  
 LCS     287       S    10   14   29       H        1   2   3   3   4   4   4   5   5   6   7   8   8   8   9  10  11  13  14  14  
 LCS     288       K     4   14   29       C        0   0   1   2   2   3   4   4   5   6   8   8   8   8   8   9   9  10  11  12  
 LCS     289       V     3   24   29       C        0   1   3   3   3   4   6   7   7   7   8   8   8   8   8   9   9  11  12  13  
 LCS     290       N    23   24   29       C        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9  10  11  13  14  
 LCS     291       P    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  10  11  12  
 LCS     292       L    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  10  12  12  
 LCS     293       D    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   9  10  11  13  14  14  
 LCS     294       A    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   9  10  11  13  14  14  
 LCS     295       N    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9  10  12  14  14  
 LCS     296       A    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   9  10  11  13  14  14  
 LCS     297       A    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   9  10  11  13  14  14  
 LCS     298       A    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8  10  11  13  14  14  
 LCS     299       K    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   9  10  11  13  14  14  
 LCS     300       A    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   9  10  11  13  14  14  
 LCS     301       F    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9  10  13  13  14  
 LCS     302       Y    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  10  11  13  
 LCS     303       T    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9  11  13  14  14  
 LCS     304       F    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  11  12  14  
 LCS     305       K    23   24   29       H        5   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  10  10  11  
 LCS     306       D    23   24   29       H        2   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  10  11  12  
 LCS     307       V    23   24   29       H        2   5   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  10  10  13  
 LCS     308       V    23   24   29       H        2   4   7   7   7   7   7   7   7   7   8   8   8   8   8   8   9  10  10  11  
 LCS     309       Q    23   24   29       H        2   5   7   7   7   7   7   7   7   7   8   8   8   8   8   8   9  10  10  11  
 LCS     310       A    23   24   29       H        2   4   7   7   7   7   7   7   7   7   8   8   8   8   8   9   9  10  10  11  
 LCS     311       A    23   24   29       H        2   4   7   7   7   7   7   7   7   7   8   8   8   8   8   8   9  10  10  11  
 LCS     312       Q    23   24   29       C        2   5   7   7   7   7   7   7   7   7   8   8   8   8   8   8   9  10  10  11  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.05 
 
 NUMBER_OF_CA_Tg:  312      NUMBER_OF_CA_Pr:  151      PERCENT_OF_CA:  48.40  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      16      17      23      23      23      23      23      23      24      26      28      32      33      34      36      40      43      46      50      54  
 GDT PERCENT_OF_CA_Pr   10.60   11.26   15.23   15.23   15.23   15.23   15.23   15.23   15.89   17.22   18.54   21.19   21.85   22.52   23.84   26.49   28.48   30.46   33.11   35.76 
 GDT PERCENT_OF_CA_Tg    5.13    5.45    7.37    7.37    7.37    7.37    7.37    7.37    7.69    8.33    8.97   10.26   10.58   10.90   11.54   12.82   13.78   14.74   16.03   17.31 
 GDT FRAGMENT: Beg-End 290-305 290-309 290-312 290-312 290-312 290-312 290-312 290-312 289-312 194-263 165-263 165-263 165-263 165-263 165-263 163-236 163-263 163-263 161-263 161-263 
 GDT RMS_LOCAL           0.30    0.53    0.95    0.95    0.95    0.95    0.95    0.95    1.74    3.39    4.15    4.40    4.50    4.60    4.82    5.56    5.75    6.01    6.61    6.92 
 GDT RMS_ALL_CA         30.08   29.88   30.20   30.20   30.20   30.20   30.20   30.20   30.09   23.19   21.89   21.85   21.83   21.85   21.85   20.81   21.05   21.07   20.74   20.74 
 
 
 TEST (CA)  RMS =  19.58               (Number of atoms:  151) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   19.58        151    48.4   312     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1297                            CRMSCA  
     SECONDARY STRUCTURE . .   20.21        110    50.0   220     CRMSCA  
     SURFACE . . . . . . . .   20.63        102    47.9   213     CRMSCA  
     BURIED  . . . . . . . .   17.18         49    49.5    99     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   19.71        741    48.1  1539     CRMSMC  
     SECONDARY STRUCTURE . .   20.39        539    49.6  1087     CRMSMC  
     SURFACE . . . . . . . .   20.80        502    47.7  1052     CRMSMC  
     BURIED  . . . . . . . .   17.20        239    49.1   487     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   20.14        137    13.2  1034     CRMSSC  
     RELIABLE SIDE CHAINS  .   20.14        137    15.6   876     CRMSSC  
     SECONDARY STRUCTURE . .   20.69         99    13.3   745     CRMSSC  
     SURFACE . . . . . . . .   21.17         94    12.1   778     CRMSSC  
     BURIED  . . . . . . . .   17.67         43    16.8   256     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   19.71        741    32.5  2282     CRMSALL 
     SECONDARY STRUCTURE . .   20.39        539    33.2  1625     CRMSALL 
     SURFACE . . . . . . . .   20.80        502    30.8  1630     CRMSALL 
     BURIED  . . . . . . . .   17.20        239    36.7   652     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.163      1.000       0.500    151    48.4   312     ERRCA  
     SECONDARY STRUCTURE . .   18.147      1.000       0.500    110    50.0   220     ERRCA  
     SURFACE . . . . . . . .   18.159      1.000       0.500    102    47.9   213     ERRCA  
     BURIED  . . . . . . . .   15.092      1.000       0.500     49    49.5    99     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.279      1.000       0.500    741    48.1  1539     ERRMC  
     SECONDARY STRUCTURE . .   18.303      1.000       0.500    539    49.6  1087     ERRMC  
     SURFACE . . . . . . . .   18.277      1.000       0.500    502    47.7  1052     ERRMC  
     BURIED  . . . . . . . .   15.183      1.000       0.500    239    49.1   487     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.775      1.000       0.500    137    13.2  1034     ERRSC  
     RELIABLE SIDE CHAINS  .   17.775      1.000       0.500    137    15.6   876     ERRSC  
     SECONDARY STRUCTURE . .   18.709      1.000       0.500     99    13.3   745     ERRSC  
     SURFACE . . . . . . . .   18.732      1.000       0.500     94    12.1   778     ERRSC  
     BURIED  . . . . . . . .   15.683      1.000       0.500     43    16.8   256     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.279      1.000       0.500    741    32.5  2282     ERRALL 
     SECONDARY STRUCTURE . .   18.303      1.000       0.500    539    33.2  1625     ERRALL 
     SURFACE . . . . . . . .   18.277      1.000       0.500    502    30.8  1630     ERRALL 
     BURIED  . . . . . . . .   15.183      1.000       0.500    239    36.7   652     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         4         5        34     151     312   DISTCA 
CA  (P)      0.00      0.00      1.28      1.60     10.90             312   DISTCA 
CA  (RMS)    0.00      0.00      2.75      3.00      6.99                   DISTCA 
 
ALL (N)         1         3        12        33       170     741    2282   DISTALL 
ALL (P)      0.04      0.13      0.53      1.45      7.45            2282   DISTALL 
ALL (RMS)    0.59      1.36      2.42      3.63      7.17                   DISTALL 
 
 
 
 
END of the results output 
