 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 79 , MODEL 79 , TARGET 252 
#          The number of residues possible to evaluate: 79 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    63     T     H     C             1.00 
 SSP    64     A     H     H             1.00 
 SSP    65     A     H     H             1.00 
 SSP    66     R     H     H             1.00 
 SSP    67     V     H     H             1.00 
 SSP    68     I     H     H             1.00 
 SSP    69     R     H     C             1.00 
 SSP    70     D     H     C             1.00 
 SSP    71     A     H     C             1.00 
 SSP    72     M     C     C             1.00 
 SSP    73     P     C     C             1.00 
 SSP    74     D     C     C             1.00 
 SSP    75     I     C     C             1.00 
 SSP    76     P     C     E             1.00 
 SSP    77     L     E     E             1.00 
 SSP    78     L     E     E             1.00 
 SSP    79     F     E     E             1.00 
 SSP    80     T     E     E             1.00 
 SSP    81     F     C     C             1.00 
 SSP    82     R     C     C             1.00 
 SSP    83     S     E     C             1.00 
 SSP    84     A     H     C             1.00 
 SSP    85     K     H     C             1.00 
 SSP    86     E     H     C             1.00 
 SSP    87     G     C     C             1.00 
 SSP    88     G     C     C             1.00 
 SSP    89     E     C     C             1.00 
 SSP    90     Q     E     C             1.00 
 SSP    91     T     C     C             1.00 
 SSP  BREAK 
 SSP    93     T     C     C             1.00 
 SSP    94     T     H     H             1.00 
 SSP    95     Q     H     H             1.00 
 SSP    96     H     H     H             1.00 
 SSP    97     Y     H     H             1.00 
 SSP    98     L     H     H             1.00 
 SSP    99     T     H     H             1.00 
 SSP   100     L     H     H             1.00 
 SSP   101     N     H     H             1.00 
 SSP   102     R     H     H             1.00 
 SSP   103     A     H     H             1.00 
 SSP   104     A     H     H             1.00 
 SSP   105     I     H     H             1.00 
 SSP   106     D     H     H             1.00 
 SSP   107     S     H     H             1.00 
 SSP   108     G     C     C             1.00 
 SSP   109     L     C     C             1.00 
 SSP   110     V     C     E             1.00 
 SSP   111     D     C     E             1.00 
 SSP   112     M     E     E             1.00 
 SSP   113     I     E     E             1.00 
 SSP   114     D     E     E             1.00 
 SSP   115     L     E     E             1.00 
 SSP   116     E     E     C             1.00 
 SSP   117     L     H     C             1.00 
 SSP   118     F     H     C             1.00 
 SSP   119     T     H     C             1.00 
 SSP   120     G     C     C             1.00 
 SSP   121     D     H     C             1.00 
 SSP   122     A     H     H             1.00 
 SSP   123     D     H     H             1.00 
 SSP   124     V     H     H             1.00 
 SSP   125     K     H     H             1.00 
 SSP   126     A     H     H             1.00 
 SSP   127     T     H     H             1.00 
 SSP   128     V     H     H             1.00 
 SSP   129     D     H     H             1.00 
 SSP   130     Y     H     H             1.00 
 SSP   131     A     H     H             1.00 
 SSP   132     H     H     H             1.00 
 SSP   133     A     H     C             1.00 
 SSP   134     H     C     C             1.00 
 SSP   135     N     C     C             1.00 
 SSP   136     V     C     C             1.00 
 SSP   137     Y     E     C             1.00 
 SSP   138     V     E     E             1.00 
 SSP   139     V     E     E             1.00 
 SSP   140     M     E     E             1.00 
 SSP   141     S     E     E             1.00 
 SSP   142     N     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              74.7      71.4     70.6     85.0     31.3 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        76.4      81.0     84.0     60.2     31.3 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8              75.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      79    100.0     74.7 
 
 BIN  0.00 - 1.00      1.00      79    100.0     74.7 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          76              76            76            252 
 ALL CONTACTS (< 8.0A)     310             327           310           1350 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       310        220   70.97   67.28   16.30       0     0.00         327      1350  |   1-9999 
 RES CONTACTS       198        183   92.42   90.15   25.96       0     0.00         203       705  |   1-4    
 RES CONTACTS        17          6   35.29   25.00    7.69       0     0.00          24        78  |   5-8    
 RES CONTACTS        95         31   32.63   31.00    5.47       0     0.00         100       567  |   9-9999 
 
 
 
# WARNING! TARGET 1934 atoms, MODEL 1712 atoms, 1712 common with TARGET 
           Number of atoms possible to evaluate: 388 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    53.95           66.9   154    30.7   502     ARMSMC  
     SECONDARY STRUCTURE . .    25.34           83.0   100    34.7   288     ARMSMC  
     SURFACE . . . . . . . .    61.14           59.0    61    26.3   232     ARMSMC  
     BURIED  . . . . . . . .    48.66           72.0    93    34.4   270     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   209     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   187     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   127     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    98     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   154     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    92     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    78     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    49     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    37     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   63 - 91   29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    29     63 - 91       4.72     4.72 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   93 - 142  50   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    50     93 - 142      3.93     3.93 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   63 - 91   29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     63 - 72       1.02    12.10 
  LONGEST_CONTINUOUS_SEGMENT    10     71 - 80       1.70     5.68 
  LONGEST_CONTINUOUS_SEGMENT    10     72 - 81       1.82     7.22 
  LONGEST_CONTINUOUS_SEGMENT    10     74 - 83       1.99    12.13 
  LCS LOCAL_SCORE:             31.27 
 
 FRAGMENT  2   93 - 142  50   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19     93 - 111      1.73     7.80 
  LCS LOCAL_SCORE:             31.12 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   63 - 91   29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     63 - 71       0.85    12.39 
  LCS LOCAL_SCORE:             22.59 
 
 FRAGMENT  2   93 - 142  50   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18     93 - 110      0.99     9.01 
  LCS LOCAL_SCORE:             22.64 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      63       T     9   10   29       H        1   2   3   3   6   9  11  12  15  17  19  23  28  30  30  31  31  31  31  31  
 LCS      64       A     9   10   29       H        1   2   5   6   7   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      65       A     9   10   29       H        1   2   3   3   3   5   9  13  15  20  24  27  28  30  30  31  31  31  31  31  
 LCS      66       R     9   10   29       H        1   2   3   3   3   4   6  12  15  17  19  23  28  30  30  31  31  31  31  31  
 LCS      67       V     9   10   29       H        1   2   5   6   7   9  11  13  15  20  24  27  28  30  30  31  31  31  31  31  
 LCS      68       I     9   10   29       H        1   2   3   3   5   8  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      69       R     9   10   29       H        1   2   3   3   3   4   6  13  15  17  24  27  28  30  30  31  31  31  31  31  
 LCS      70       D     9   10   29       H        1   2   5   6   7   9  11  14  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      71       A     9   10   29       H        1   1   3   3   4   6   7  13  15  19  24  27  28  30  30  31  31  31  31  31  
 LCS      72       M     8   10   29       C        1   2   3   3   6   7   8   8  10  17  22  27  28  30  30  31  31  31  31  31  
 LCS      73       P     8   10   29       C        1   2   3   3   6   7   8   9  15  21  24  27  28  30  30  31  31  31  31  31  
 LCS      74       D     8   10   29       C        1   2   3   3   5   7  11  13  16  21  24  27  28  30  30  31  31  31  31  31  
 LCS      75       I     8   10   29       C        1   2   3   3   7   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      76       P     8   10   29       C        1   2   5   6   7   9  11  14  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      77       L     8   10   29       E        1   2   5   6   7   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      78       L     8   10   29       E        1   2   5   6   7   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      79       F     8   10   29       E        1   2   5   6   7   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      80       T     5   10   29       E        1   1   5   6   6   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      81       F     4   10   29       C        1   1   1   3   6   7   9  10  13  15  23  26  28  30  30  31  31  31  31  31  
 LCS      82       R     4   10   29       C        1   1   1   2   7   9  11  14  17  19  23  26  28  30  30  31  31  31  31  31  
 LCS      83       S     4   10   29       E        1   1   1   6   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      84       A     4    7   29       H        1   1   1   2   2   7   9  11  15  19  24  27  28  30  30  31  31  31  31  31  
 LCS      85       K     4    7   29       H        1   1   1   2   2   2   6   8  15  19  23  27  28  29  30  31  31  31  31  31  
 LCS      86       E     4    7   29       H        1   1   1   2   3   5   6   6  17  20  23  27  28  30  30  31  31  31  31  31  
 LCS      87       G     4    7   29       C        1   1   2   3   6   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      88       G     3    7   29       C        1   1   2   5   7   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      89       E     3    7   29       C        1   1   3   5   7   9  12  14  17  20  24  26  28  30  30  31  31  31  31  31  
 LCS      90       Q     3    7   29       E        1   1   1   2   6   8  11  14  15  20  24  26  28  30  30  31  31  31  31  31  
 LCS      91       T     3    4   29       C        1   1   1   1   1   2   3   9   9  15  18  21  25  29  30  31  31  31  31  31  
 LCS      92       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      93       T    18   19   50       C        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      94       T    18   19   50       H        5   5   6   7   8   9  12  15  17  20  24  27  28  30  30  31  31  31  31  31  
 LCS      95       Q    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      96       H    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      97       Y    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      98       L    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS      99       T    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     100       L    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     101       N    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     102       R    18   19   50       H        5   5   6   7   8   9  12  15  17  20  24  27  28  30  30  31  31  31  31  31  
 LCS     103       A    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     104       A    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     105       I    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     106       D    18   19   50       H        3   5   6   7   8   9  12  15  17  20  24  27  28  30  30  31  31  31  31  31  
 LCS     107       S    18   19   50       H        5   5   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     108       G    18   19   50       C        1   4   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     109       L    18   19   50       C        1   3   4   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     110       V    18   19   50       C        1   2   6   7   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     111       D     6   19   50       C        1   2   3   6   7   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     112       M     6   15   50       E        1   2   3   6   7   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     113       I     6    9   50       E        1   2   3   4   7   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     114       D     6    9   50       E        1   2   3   4   7   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     115       L     6    9   50       E        1   2   2   4   6   9  11  13  15  19  24  27  28  30  30  31  31  31  31  31  
 LCS     116       E     6    9   50       E        1   2   2   4   6   9  11  13  15  19  23  27  28  30  30  31  31  31  31  31  
 LCS     117       L     3    9   50       H        1   1   1   2   4   7  10  12  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     118       F     3    7   50       H        0   1   1   3   4   8  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     119       T     3    7   50       H        0   1   1   1   3   6  11  12  15  21  24  27  28  30  30  31  31  31  31  31  
 LCS     120       G     4   17   50       C        0   1   1   4   5   8  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     121       D     5   17   50       H        1   1   3   5   6   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     122       A     5   17   50       H        1   1   3   5   6   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     123       D    10   17   50       H        1   1   3   5   5   9  11  12  15  19  23  27  28  30  30  31  31  31  31  31  
 LCS     124       V    11   17   50       H        3   3   4   5   7   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     125       K    11   17   50       H        3   3   4   5   5   9  11  12  15  19  23  27  28  30  30  31  31  31  31  31  
 LCS     126       A    11   17   50       H        3   3   4   5   5   9  10  12  14  16  19  24  25  28  30  31  31  31  31  31  
 LCS     127       T    11   17   50       H        3   3   4   5   6   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     128       V    11   17   50       H        3   3   4   5   6   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     129       D    11   17   50       H        3   3   4   5   5   9  11  12  15  19  23  27  28  30  30  31  31  31  31  31  
 LCS     130       Y    11   17   50       H        3   3   4   5   6   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     131       A    11   17   50       H        3   3   5   6   7   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     132       H    11   17   50       H        3   3   4   5   5   6   9  11  15  19  23  27  28  30  30  31  31  31  31  31  
 LCS     133       A    11   17   50       H        1   2   4   5   6   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     134       H    11   17   50       C        2   3   4   6   6   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     135       N     3   17   50       C        1   1   3   4   7   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     136       V     7   17   50       C        1   2   4   6   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     137       Y     7    9   50       E        1   2   5   6   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     138       V     7    9   50       E        1   2   2   3   6   9  11  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     139       V     7    9   50       E        1   2   5   6   8   9  12  15  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     140       M     7    9   50       E        1   2   2   3   5   9  11  13  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     141       S     7    9   50       E        1   2   5   6   7   9  11  14  17  21  24  27  28  30  30  31  31  31  31  31  
 LCS     142       N     7    9   50       E        1   2   5   6   7   9  11  13  15  19  24  27  28  30  30  31  31  31  31  31  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.19 
 
 NUMBER_OF_CA_Tg:  252      NUMBER_OF_CA_Pr:   79      PERCENT_OF_CA:  31.35  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      13      15      17      18      22      25      31      38      43      53      61      70      73      76      78      79      79      79      79      79  
 GDT PERCENT_OF_CA_Pr   16.46   18.99   21.52   22.78   27.85   31.65   39.24   48.10   54.43   67.09   77.22   88.61   92.41   96.20   98.73  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    5.16    5.95    6.75    7.14    8.73    9.92   12.30   15.08   17.06   21.03   24.21   27.78   28.97   30.16   30.95   31.35   31.35   31.35   31.35   31.35 
 GDT FRAGMENT: Beg-End  93-105  93-107  93-110  93-110  83-139  78-139  78-139  77-139  64-141  64-141  64-142  64-142  64-142  63-142  63-142  63-142  63-142  63-142  63-142  63-142 
 GDT RMS_LOCAL           0.32    0.40    0.86    0.99    1.64    2.01    2.46    2.94    3.29    3.86    4.09    4.40    4.51    4.65    4.74    4.80    4.80    4.80    4.80    4.80 
 GDT RMS_ALL_CA          9.52    9.66    9.18    9.33    6.63    6.47    6.31    5.58    5.40    4.87    4.91    4.82    4.81    4.80    4.80    4.80    4.80    4.80    4.80    4.80 
 
 
 TEST (CA)  RMS =   4.80               (Number of atoms:   79) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    4.80         79    31.3   252     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0607                            CRMSCA  
     SECONDARY STRUCTURE . .    4.71         51    35.4   144     CRMSCA  
     SURFACE . . . . . . . .    5.32         32    27.4   117     CRMSCA  
     BURIED  . . . . . . . .    4.41         47    34.8   135     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.85        388    31.1  1247     CRMSMC  
     SECONDARY STRUCTURE . .    4.75        254    35.3   720     CRMSMC  
     SURFACE . . . . . . . .    5.33        155    26.8   578     CRMSMC  
     BURIED  . . . . . . . .    4.50        233    34.8   669     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    5.60         72     7.8   926     CRMSSC  
     RELIABLE SIDE CHAINS  .    5.60         72     9.4   768     CRMSSC  
     SECONDARY STRUCTURE . .    5.39         50     8.9   563     CRMSSC  
     SURFACE . . . . . . . .    6.28         27     6.0   452     CRMSSC  
     BURIED  . . . . . . . .    5.14         45     9.5   474     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.85        388    20.1  1934     CRMSALL 
     SECONDARY STRUCTURE . .    4.75        254    22.3  1139     CRMSALL 
     SURFACE . . . . . . . .    5.33        155    16.8   920     CRMSALL 
     BURIED  . . . . . . . .    4.50        233    23.0  1014     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.573      1.000       0.500     79    31.3   252     ERRCA  
     SECONDARY STRUCTURE . .    4.487      1.000       0.500     51    35.4   144     ERRCA  
     SURFACE . . . . . . . .    5.044      1.000       0.500     32    27.4   117     ERRCA  
     BURIED  . . . . . . . .    4.252      1.000       0.500     47    34.8   135     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.600      1.000       0.500    388    31.1  1247     ERRMC  
     SECONDARY STRUCTURE . .    4.534      1.000       0.500    254    35.3   720     ERRMC  
     SURFACE . . . . . . . .    5.060      1.000       0.500    155    26.8   578     ERRMC  
     BURIED  . . . . . . . .    4.294      1.000       0.500    233    34.8   669     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.259      1.000       0.500     72     7.8   926     ERRSC  
     RELIABLE SIDE CHAINS  .    5.259      1.000       0.500     72     9.4   768     ERRSC  
     SECONDARY STRUCTURE . .    5.119      1.000       0.500     50     8.9   563     ERRSC  
     SURFACE . . . . . . . .    5.926      1.000       0.500     27     6.0   452     ERRSC  
     BURIED  . . . . . . . .    4.858      1.000       0.500     45     9.5   474     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.600      1.000       0.500    388    20.1  1934     ERRALL 
     SECONDARY STRUCTURE . .    4.534      1.000       0.500    254    22.3  1139     ERRALL 
     SURFACE . . . . . . . .    5.060      1.000       0.500    155    16.8   920     ERRALL 
     BURIED  . . . . . . . .    4.294      1.000       0.500    233    23.0  1014     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         4        13        49        79      79     252   DISTCA 
CA  (P)      0.00      1.59      5.16     19.44     31.35             252   DISTCA 
CA  (RMS)    0.00      1.57      2.29      3.83      4.80                   DISTCA 
 
ALL (N)         1        16        68       245       387     388    1934   DISTALL 
ALL (P)      0.05      0.83      3.52     12.67     20.01            1934   DISTALL 
ALL (RMS)    0.40      1.55      2.37      3.84      4.83                   DISTALL 
 
 
 
 
END of the results output 
