 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 114 , MODEL 114 , TARGET 252 
#          The number of residues possible to evaluate: 114 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   121     D     H     C             1.00 
 SSP   122     A     H     C             1.00 
 SSP   123     D     H     C             1.00 
 SSP   124     V     H     C             1.00 
 SSP   125     K     H     C             1.00 
 SSP   126     A     H     C             1.00 
 SSP   127     T     H     C             1.00 
 SSP   128     V     H     C             1.00 
 SSP   129     D     H     C             1.00 
 SSP   130     Y     H     H             1.00 
 SSP   131     A     H     H             1.00 
 SSP   132     H     H     H             1.00 
 SSP   133     A     H     H             1.00 
 SSP   134     H     C     C             1.00 
 SSP   135     N     C     C             1.00 
 SSP   136     V     C     C             1.00 
 SSP   137     Y     E     C             1.00 
 SSP   138     V     E     C             1.00 
 SSP   139     V     E     C             1.00 
 SSP   140     M     E     C             1.00 
 SSP   141     S     E     C             1.00 
 SSP   142     N     E     C             1.00 
 SSP   143     H     E     C             1.00 
 SSP   144     D     E     C             1.00 
 SSP   145     F     C     C             1.00 
 SSP   146     H     C     C             1.00 
 SSP   147     Q     C     C             1.00 
 SSP   148     T     C     C             1.00 
 SSP   149     P     C     C             1.00 
 SSP   150     S     C     C             1.00 
 SSP   151     A     H     H             1.00 
 SSP   152     E     H     H             1.00 
 SSP   153     E     H     H             1.00 
 SSP   154     M     H     H             1.00 
 SSP   155     V     H     H             1.00 
 SSP   156     S     H     H             1.00 
 SSP   157     R     H     H             1.00 
 SSP   158     L     H     H             1.00 
 SSP   159     R     H     H             1.00 
 SSP   160     K     H     H             1.00 
 SSP   161     M     H     H             1.00 
 SSP   162     Q     H     H             1.00 
 SSP   163     A     H     H             1.00 
 SSP   164     L     C     H             1.00 
 SSP   165     G     C     H             1.00 
 SSP   166     A     C     C             1.00 
 SSP   167     D     C     C             1.00 
 SSP   168     I     E     C             1.00 
 SSP   169     P     E     C             1.00 
 SSP   170     K     E     C             1.00 
 SSP   171     I     E     C             1.00 
 SSP   172     A     E     C             1.00 
 SSP   173     V     E     E             1.00 
 SSP   174     M     C     C             1.00 
 SSP   175     P     C     C             1.00 
 SSP   176     Q     C     E             1.00 
 SSP   177     S     C     C             1.00 
 SSP   178     K     H     C             1.00 
 SSP   179     H     H     H             1.00 
 SSP   180     D     H     H             1.00 
 SSP   181     V     H     H             1.00 
 SSP   182     L     H     H             1.00 
 SSP   183     T     H     H             1.00 
 SSP   184     L     H     H             1.00 
 SSP   185     L     H     H             1.00 
 SSP   186     T     H     H             1.00 
 SSP   187     A     H     H             1.00 
 SSP   188     T     H     H             1.00 
 SSP   189     L     H     H             1.00 
 SSP   190     E     H     H             1.00 
 SSP   191     M     H     H             1.00 
 SSP   192     Q     H     H             1.00 
 SSP   193     Q     H     C             1.00 
 SSP   194     H     H     C             1.00 
 SSP  BREAK 
 SSP   196     A     C     C             1.00 
 SSP   197     D     C     C             1.00 
 SSP   198     R     C     C             1.00 
 SSP   199     P     C     C             1.00 
 SSP   200     V     C     E             1.00 
 SSP   201     I     E     C             1.00 
 SSP   202     T     E     C             1.00 
 SSP   203     M     E     E             1.00 
 SSP   204     S     E     C             1.00 
 SSP   205     M     C     C             1.00 
 SSP   206     A     C     C             1.00 
 SSP   207     K     C     C             1.00 
 SSP   208     E     C     C             1.00 
 SSP   209     G     C     C             1.00 
 SSP   210     V     H     C             1.00 
 SSP   211     I     H     C             1.00 
 SSP   212     S     H     C             1.00 
 SSP   213     R     H     C             1.00 
 SSP   214     L     H     C             1.00 
 SSP   215     A     C     C             1.00 
 SSP   216     G     H     C             1.00 
 SSP   217     E     H     C             1.00 
 SSP   218     V     H     C             1.00 
 SSP   219     F     H     C             1.00 
 SSP   220     G     C     H             1.00 
 SSP   221     S     C     H             1.00 
 SSP   222     A     C     H             1.00 
 SSP   223     A     E     H             1.00 
 SSP   224     T     E     H             1.00 
 SSP   225     F     E     H             1.00 
 SSP   226     G     C     H             1.00 
 SSP   227     A     E     C             1.00 
 SSP   228     V     C     C             1.00 
 SSP   229     K     C     C             1.00 
 SSP   230     Q     C     C             1.00 
 SSP   231     A     C     C             1.00 
 SSP   232     S     C     C             1.00 
 SSP   233     A     C     C             1.00 
 SSP   234     P     C     C             1.00 
 SSP   235     G     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              57.0      59.6      9.1     80.0     45.2 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        53.8      69.2      9.1     58.0     45.2 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            9              33.3              11.1 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     114    100.0     57.0 
 
 BIN  0.00 - 1.00      1.00     114    100.0     57.0 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         110             110           110            252 
 ALL CONTACTS (< 8.0A)     443             500           443           1350 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       443        267   60.27   53.40   19.78       0     0.00         500      1350  |   1-9999 
 RES CONTACTS       296        257   86.82   84.82   36.45       0     0.00         303       705  |   1-4    
 RES CONTACTS        20          4   20.00   16.67    5.13       0     0.00          24        78  |   5-8    
 RES CONTACTS       127          6    4.72    3.47    1.06       0     0.00         173       567  |   9-9999 
 
 
 
# WARNING! TARGET 1934 atoms, MODEL 1638 atoms, 1638 common with TARGET 
           Number of atoms possible to evaluate: 560 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    70.41           58.5   224    44.6   502     ARMSMC  
     SECONDARY STRUCTURE . .    51.33           73.0   126    43.8   288     ARMSMC  
     SURFACE . . . . . . . .    72.81           59.8    97    41.8   232     ARMSMC  
     BURIED  . . . . . . . .    68.52           57.5   127    47.0   270     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   209     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   187     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   127     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    98     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   154     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    92     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    78     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    49     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    37     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  121 - 194  74   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    35    131 - 165      4.93    10.54 
  LONGEST_CONTINUOUS_SEGMENT    35    133 - 167      4.99    10.65 
  LONGEST_CONTINUOUS_SEGMENT    35    134 - 168      4.93    10.72 
  LCS LOCAL_SCORE:             39.41 
 
 FRAGMENT  2  196 - 235  40   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17    219 - 235      4.89    15.39 
  LCS LOCAL_SCORE:             40.62 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  121 - 194  74   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    145 - 165      1.90    11.73 
  LONGEST_CONTINUOUS_SEGMENT    21    146 - 166      1.85    12.39 
  LCS LOCAL_SCORE:             19.54 
 
 FRAGMENT  2  196 - 235  40   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    196 - 206      1.77    15.38 
  LONGEST_CONTINUOUS_SEGMENT    11    197 - 207      1.82    14.80 
  LCS LOCAL_SCORE:             17.75 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  121 - 194  74   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17    149 - 165      0.57    12.86 
  LCS LOCAL_SCORE:             13.24 
 
 FRAGMENT  2  196 - 235  40   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    197 - 202      0.75    15.67 
  LONGEST_CONTINUOUS_SEGMENT     6    200 - 205      0.97    15.19 
  LCS LOCAL_SCORE:             10.69 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     121       D     8    9   27       H        3   3   3   3   3   3   4   4   6   7   9  10  12  14  16  17  18  19  20  21  
 LCS     122       A     8    9   27       H        3   3   3   3   3   3   4   4   4   7   8  10  12  13  15  16  18  19  20  21  
 LCS     123       D     8    9   27       H        3   3   3   3   3   3   4   6   7   7   8  10  12  13  15  17  18  19  20  21  
 LCS     124       V     8    9   27       H        3   3   3   3   3   3   4   6   7   7   9  11  12  14  16  17  18  19  20  21  
 LCS     125       K     8    9   27       H        3   3   3   3   3   4   5   6   7   7   8   9  10  13  14  16  18  19  20  21  
 LCS     126       A     8    9   27       H        3   3   3   3   3   4   5   6   7   7   8   9   9  11  14  16  17  19  19  21  
 LCS     127       T     8   10   27       H        3   3   3   3   3   3   5   6   7   7   8  10  12  13  15  17  18  19  20  21  
 LCS     128       V     8   10   27       H        3   3   3   3   3   3   4   5   6   7   8   9   9  11  14  16  18  19  20  21  
 LCS     129       D     7   10   27       H        1   2   2   3   3   3   4   5   6   7   8   9   9  10  11  11  13  14  19  21  
 LCS     130       Y     7   10   27       H        1   2   2   3   3   4   5   6   7   7   9  10  12  14  16  17  18  19  20  21  
 LCS     131       A     7   10   35       H        1   2   2   3   3   3   5   7   9  11  12  14  16  16  17  17  18  23  25  25  
 LCS     132       H     7   10   35       H        1   2   2   3   3   3   4   5   5   6   8  10  12  14  16  17  18  19  20  21  
 LCS     133       A     7   10   35       H        1   2   2   3   3   3   4   5   7   7   9  11  13  14  16  17  18  19  20  21  
 LCS     134       H     7   10   35       C        1   2   2   3   3   4   5   7  10  11  12  14  16  16  17  20  22  24  25  25  
 LCS     135       N     5   10   35       C        1   1   2   3   4   6   8   9  11  13  17  20  22  23  24  24  25  26  26  27  
 LCS     136       V     7   10   35       C        1   2   2   3   4   6   8   9  12  15  19  21  22  23  24  24  25  26  26  27  
 LCS     137       Y     7   10   35       E        1   2   2   3   5   7   9  11  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     138       V     7   10   35       E        1   2   2   3   4   7   9  11  14  17  19  21  22  23  24  24  25  26  27  27  
 LCS     139       V     7   10   35       E        1   2   2   3   5   7   9  11  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     140       M     7   10   35       E        1   2   2   3   5   7   9  10  13  17  19  21  22  23  24  24  25  26  27  27  
 LCS     141       S     7   10   35       E        1   2   2   3   4   7  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     142       N     7   10   35       E        1   1   2   3   5   7  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     143       H     4    7   35       E        1   1   2   3   4   7  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     144       D     4    7   35       E        1   1   2   5   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     145       F     4   21   35       C        1   1   1   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     146       H     4   21   35       C        1   1   1   1   1   2   4   9  12  15  18  21  22  23  24  24  25  26  27  27  
 LCS     147       Q     3   21   35       C        4   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     148       T     3   21   35       C        1   1   1   5   7   8   9  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     149       P    17   21   35       C        4   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     150       S    17   21   35       C        5   6   7   7   7   8   9  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     151       A    17   21   35       H        5   6   7   7   7   8   9  11  13  15  19  21  22  23  24  24  25  26  27  27  
 LCS     152       E    17   21   35       H        5   6   7   7   7   8   9  11  12  14  17  20  22  23  24  24  25  26  27  27  
 LCS     153       E    17   21   35       H        5   6   7   7   7   8   9  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     154       M    17   21   35       H        5   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     155       V    17   21   35       H        5   6   7   7   7   8   9  11  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     156       S    17   21   35       H        5   6   7   7   7   8   9  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     157       R    17   21   35       H        5   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     158       L    17   21   35       H        5   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     159       R    17   21   35       H        5   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     160       K    17   21   35       H        5   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     161       M    17   21   35       H        5   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     162       Q    17   21   35       H        4   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     163       A    17   21   35       H        4   6   7   7   7   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     164       L    17   21   35       C        5   6   7   7   7   8   9  11  14  16  19  21  22  23  24  24  25  26  27  27  
 LCS     165       G    17   21   35       C        2   5   7   7   7   8   9  11  12  15  17  19  22  23  24  24  25  26  27  27  
 LCS     166       A     3   21   35       C        1   1   1   1   1   2   6   7   9  11  13  18  21  23  24  24  25  26  27  27  
 LCS     167       D     3    5   35       C        1   1   1   1   1   3   7  10  14  17  19  21  22  23  24  24  25  26  27  27  
 LCS     168       I     3    5   35       E        1   1   1   1   3   3   3   4   4   6   8  12  14  15  17  17  18  19  25  27  
 LCS     169       P     4    9   31       E        1   1   1   2   3   3   3   4   4   5   5   7   9  13  15  16  17  18  19  21  
 LCS     170       K     4    9   27       E        1   1   1   2   3   3   3   4   4   7   9  11  13  14  15  17  18  19  19  21  
 LCS     171       I     6    9   21       E        1   1   2   2   2   3   3   4   4   5   5   7   9  12  15  16  17  18  18  18  
 LCS     172       A     6    9   21       E        1   1   2   2   3   3   3   4   5   5   7   9  12  14  15  17  17  18  19  21  
 LCS     173       V     6    9   21       E        1   1   2   2   3   3   3   4   5   5   7   9  12  14  15  17  17  18  19  21  
 LCS     174       M     6    9   21       C        1   1   2   2   3   3   3   4   5   5   7   9  12  14  15  17  17  18  19  21  
 LCS     175       P     6    9   21       C        1   1   2   2   3   3   3   4   5   7   7   9  12  14  15  17  17  18  19  21  
 LCS     176       Q     6    9   21       C        1   1   2   2   3   3   3   4   5   7   7   9  12  14  15  17  17  18  19  21  
 LCS     177       S     6    9   21       C        1   1   2   2   3   3   3   4   5   7   7   9  12  14  15  17  17  18  19  21  
 LCS     178       K     5   17   21       H        1   1   3   4   5   5   6   6   6   7   9  11  13  15  17  23  25  26  27  27  
 LCS     179       H     5   17   21       H        1   3   5   5   5   5   6   6   7   9  12  13  19  21  23  24  25  26  27  27  
 LCS     180       D    13   17   21       H        1   1   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     181       V    13   17   21       H        4   4   5   5   5   8   9  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     182       L    13   17   21       H        4   4   5   5   5   5   6  10  13  16  18  21  22  23  24  24  25  26  27  27  
 LCS     183       T    13   17   21       H        4   4   5   5   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     184       L    13   17   21       H        4   4   5   5   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     185       L    13   17   21       H        4   4   5   5   5   5   9  10  13  16  19  21  22  23  24  24  25  26  27  27  
 LCS     186       T    13   17   21       H        4   4   5   5   5   5   8  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     187       A    13   17   21       H        4   4   5   5   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     188       T    13   17   21       H        4   4   5   6   7   8   9  11  13  17  19  21  22  23  24  24  25  26  27  27  
 LCS     189       L    13   17   21       H        4   4   5   5   5   7   9  10  13  17  19  21  22  23  24  24  25  26  27  27  
 LCS     190       E    13   17   21       H        4   4   5   5   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     191       M    13   17   21       H        4   4   5   5   5   7   9  11  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     192       Q    13   17   21       H        4   4   5   5   7   8   9  11  12  13  17  19  22  23  24  24  25  25  26  27  
 LCS     193       Q    13   17   19       H        1   4   5   5   5   7   9  10  12  15  19  21  22  23  24  24  25  26  27  27  
 LCS     194       H     3   17   19       H        1   1   1   3   5   5   7  12  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     195       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     196       A     5   11   16       C        1   1   1   2   3   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     197       D     6   11   16       C        1   1   2   3   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     198       R     6   11   16       C        1   1   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     199       P     6   11   16       C        1   3   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     200       V     6   11   16       C        1   3   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     201       I     6   11   16       E        1   3   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     202       T     6   11   16       E        1   3   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     203       M     6   11   16       E        1   1   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     204       S     6   11   16       E        1   1   2   3   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     205       M     6   11   16       C        1   1   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     206       A     4   11   16       C        1   3   3   4   6   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     207       K     3   11   16       C        1   1   2   3   5   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     208       E     3    9   16       C        1   1   1   2   3   3   4   4   5   7  15  16  19  21  23  24  25  26  27  27  
 LCS     209       G     3    5   16       C        1   1   1   1   1   2   3   4   5   7   7   9  10  12  13  15  25  26  27  27  
 LCS     210       V     3    5   16       H        1   1   1   1   1   2   2   3   5   7   7   9  10  12  13  20  23  25  27  27  
 LCS     211       I     4    5   16       H        1   1   1   1   1   2   2   3   3   4   6   7   8   9  13  14  15  21  23  27  
 LCS     212       S     4    5   15       H        1   1   1   1   1   2   2   2   2   3   4   4   4   5   5   7   9  10  10  10  
 LCS     213       R     4    4   15       H        1   1   1   1   1   2   2   3   3   4   4   4   5   5   5   7   8  10  10  11  
 LCS     214       L     5    6   15       H        1   1   1   1   2   2   2   3   3   4  11  13  15  19  21  22  25  26  27  27  
 LCS     215       A     5    6   15       C        1   1   1   1   2   2   2   3   3   4  11  13  15  19  21  22  25  26  27  27  
 LCS     216       G     5    6   15       H        1   1   1   1   2   2   2   3   3   4   7  13  15  17  21  22  23  26  27  27  
 LCS     217       E     5    6   15       H        1   1   1   1   2   2   2   3   3   4   7   7   8   9  13  14  23  25  25  27  
 LCS     218       V     5    6   15       H        1   1   1   1   2   2   2   3   3   7   7   9   9  11  13  14  23  25  25  27  
 LCS     219       F     4    6   17       H        1   1   1   1   2   3   3   4   5   7   7   9   9  11  13  14  23  25  25  27  
 LCS     220       G     3    6   17       C        1   1   1   1   1   2   2   3   4   7   7   9   9  11  13  14  23  25  25  27  
 LCS     221       S     3    4   17       C        1   1   1   1   1   1   2   3   4   5   7   7   8  19  21  23  25  26  27  27  
 LCS     222       A     3    4   17       C        1   1   1   2   3   4   6  11  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     223       A     3    4   17       E        1   1   2   3   5   8  10  13  15  17  19  21  22  23  24  24  25  26  27  27  
 LCS     224       T     3    4   17       E        0   1   1   1   1   2   2   3   3   5  15  17  21  23  24  24  25  26  27  27  
 LCS     225       F     3    3   17       E        0   1   1   1   1   2   3   3   5   5   6   9  12  13  14  21  24  25  25  26  
 LCS     226       G     3    6   17       C        0   1   1   1   2   2   3   3   3   5   8   8   9  10  10  11  13  14  21  22  
 LCS     227       A     3    6   17       E        1   1   1   1   2   2   3   3   3   5   5   6   7   7   8   8   9  10  12  17  
 LCS     228       V     4    6   17       C        1   1   1   1   2   2   3   3   3   5   5   6   7   7   8   8   9  14  15  15  
 LCS     229       K     4    6   17       C        1   1   1   1   2   2   3   3   3   5   5   6   7   7   8   8   9  10  10  11  
 LCS     230       Q     4    6   17       C        1   1   1   1   2   2   3   3   3   5   5   6   7   7   8   8   9  10  10  11  
 LCS     231       A     4    6   17       C        0   1   1   1   2   2   3   3   3   5   5   6   7   7   8   9   9  10  10  11  
 LCS     232       S     4    6   17       C        0   1   1   1   1   2   3   4   4   5   5   6   7   7   8   9   9  10  10  11  
 LCS     233       A     4    6   17       C        0   1   1   1   1   2   3   4   4   5   5   6   7   7   8   9   9  10  10  11  
 LCS     234       P     4    6   17       C        0   1   1   1   2   2   2   3   3   5   5   6   7   7   8   9   9  10  10  11  
 LCS     235       G     3    4   17       C        0   1   1   1   1   1   2   3   3   5   5   6   7   7   8   9   9  10  10  11  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.41 
 
 NUMBER_OF_CA_Tg:  252      NUMBER_OF_CA_Pr:  114      PERCENT_OF_CA:  45.24  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      13      17      18      18      20      21      27      35      40      44      49      53      57      60      62      62      65      67      69      70  
 GDT PERCENT_OF_CA_Pr   11.40   14.91   15.79   15.79   17.54   18.42   23.68   30.70   35.09   38.60   42.98   46.49   50.00   52.63   54.39   54.39   57.02   58.77   60.53   61.40 
 GDT PERCENT_OF_CA_Tg    5.16    6.75    7.14    7.14    7.94    8.33   10.71   13.89   15.87   17.46   19.44   21.03   22.62   23.81   24.60   24.60   25.79   26.59   27.38   27.78 
 GDT FRAGMENT: Beg-End 150-164 147-164 147-165 147-165 147-192 147-192 144-223 142-223 141-223 137-223 137-223 137-223 137-223 136-223 135-223 136-224 136-224 137-224 137-224 136-224 
 GDT RMS_LOCAL           0.33    0.57    0.63    0.63    1.34    1.51    2.63    3.14    3.32    3.58    3.82    4.03    4.24    4.44    4.61    4.61    5.07    5.45    5.69    5.76 
 GDT RMS_ALL_CA         18.19   17.25   17.30   17.30   15.67   15.53   13.01   12.98   13.05   13.20   13.16   13.12   13.05   13.00   12.98   12.97   13.05   13.34   13.50   13.44 
 
 
 TEST (CA)  RMS =  12.35               (Number of atoms:  114) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   12.35        114    45.2   252     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1083                            CRMSCA  
     SECONDARY STRUCTURE . .    9.85         64    44.4   144     CRMSCA  
     SURFACE . . . . . . . .   13.13         50    42.7   117     CRMSCA  
     BURIED  . . . . . . . .   11.70         64    47.4   135     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   12.37        560    44.9  1247     CRMSMC  
     SECONDARY STRUCTURE . .    9.91        316    43.9   720     CRMSMC  
     SURFACE . . . . . . . .   13.13        247    42.7   578     CRMSMC  
     BURIED  . . . . . . . .   11.73        313    46.8   669     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   12.69        104    11.2   926     CRMSSC  
     RELIABLE SIDE CHAINS  .   12.69        104    13.5   768     CRMSSC  
     SECONDARY STRUCTURE . .   10.55         60    10.7   563     CRMSSC  
     SURFACE . . . . . . . .   13.70         47    10.4   452     CRMSSC  
     BURIED  . . . . . . . .   11.80         57    12.0   474     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   12.37        560    29.0  1934     CRMSALL 
     SECONDARY STRUCTURE . .    9.91        316    27.7  1139     CRMSALL 
     SURFACE . . . . . . . .   13.13        247    26.8   920     CRMSALL 
     BURIED  . . . . . . . .   11.73        313    30.9  1014     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.499      1.000       0.500    114    45.2   252     ERRCA  
     SECONDARY STRUCTURE . .    8.409      1.000       0.500     64    44.4   144     ERRCA  
     SURFACE . . . . . . . .   11.030      1.000       0.500     50    42.7   117     ERRCA  
     BURIED  . . . . . . . .   10.084      1.000       0.500     64    47.4   135     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.488      1.000       0.500    560    44.9  1247     ERRMC  
     SECONDARY STRUCTURE . .    8.416      1.000       0.500    316    43.9   720     ERRMC  
     SURFACE . . . . . . . .   11.027      1.000       0.500    247    42.7   578     ERRMC  
     BURIED  . . . . . . . .   10.062      1.000       0.500    313    46.8   669     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.856      1.000       0.500    104    11.2   926     ERRSC  
     RELIABLE SIDE CHAINS  .   10.856      1.000       0.500    104    13.5   768     ERRSC  
     SECONDARY STRUCTURE . .    9.139      1.000       0.500     60    10.7   563     ERRSC  
     SURFACE . . . . . . . .   11.618      1.000       0.500     47    10.4   452     ERRSC  
     BURIED  . . . . . . . .   10.227      1.000       0.500     57    12.0   474     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.488      1.000       0.500    560    29.0  1934     ERRALL 
     SECONDARY STRUCTURE . .    8.416      1.000       0.500    316    27.7  1139     ERRALL 
     SURFACE . . . . . . . .   11.027      1.000       0.500    247    26.8   920     ERRALL 
     BURIED  . . . . . . . .   10.062      1.000       0.500    313    30.9  1014     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         3        10        30        64     114     252   DISTCA 
CA  (P)      0.00      1.19      3.97     11.90     25.40             252   DISTCA 
CA  (RMS)    0.00      1.45      2.27      3.64      5.99                   DISTCA 
 
ALL (N)         2        20        51       137       316     560    1934   DISTALL 
ALL (P)      0.10      1.03      2.64      7.08     16.34            1934   DISTALL 
ALL (RMS)    0.69      1.45      2.18      3.50      6.01                   DISTALL 
 
 
 
 
END of the results output 
