 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 123 , MODEL 123 , TARGET 252 
#          The number of residues possible to evaluate: 123 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    40     A     C     C             1.00 
 SSP    41     T     C     C             1.00 
 SSP    42     F     C     C             1.00 
 SSP    43     D     C     C             1.00 
 SSP    44     I     E     C             1.00 
 SSP    45     L     E     C             1.00 
 SSP    46     E     E     C             1.00 
 SSP    47     W     E     C             1.00 
 SSP    48     R     E     H             1.00 
 SSP    49     V     H     H             1.00 
 SSP    50     D     H     H             1.00 
 SSP    51     H     H     H             1.00 
 SSP    52     F     C     H             1.00 
 SSP    53     M     C     H             1.00 
 SSP    54     D     C     H             1.00 
 SSP    55     I     C     H             1.00 
 SSP    56     A     C     H             1.00 
 SSP  BREAK 
 SSP    58     T     H     H             1.00 
 SSP    59     Q     H     H             1.00 
 SSP    60     S     H     H             1.00 
 SSP    61     V     H     H             1.00 
 SSP    62     L     H     H             1.00 
 SSP    63     T     H     H             1.00 
 SSP    64     A     H     H             1.00 
 SSP    65     A     H     H             1.00 
 SSP    66     R     H     H             1.00 
 SSP    67     V     H     H             1.00 
 SSP    68     I     H     H             1.00 
 SSP    69     R     H     C             1.00 
 SSP    70     D     H     C             1.00 
 SSP    71     A     H     C             1.00 
 SSP    72     M     C     C             1.00 
 SSP    73     P     C     C             1.00 
 SSP    74     D     C     C             1.00 
 SSP    75     I     C     C             1.00 
 SSP    76     P     C     C             1.00 
 SSP    77     L     E     C             1.00 
 SSP    78     L     E     C             1.00 
 SSP    79     F     E     C             1.00 
 SSP    80     T     E     C             1.00 
 SSP    81     F     C     C             1.00 
 SSP    82     R     C     C             1.00 
 SSP    83     S     E     C             1.00 
 SSP    84     A     H     E             1.00 
 SSP    85     K     H     C             1.00 
 SSP    86     E     H     C             1.00 
 SSP    87     G     C     C             1.00 
 SSP    88     G     C     C             1.00 
 SSP    89     E     C     C             1.00 
 SSP    90     Q     E     C             1.00 
 SSP    91     T     C     C             1.00 
 SSP    92     I     C     H             1.00 
 SSP    93     T     C     H             1.00 
 SSP    94     T     H     H             1.00 
 SSP    95     Q     H     H             1.00 
 SSP    96     H     H     H             1.00 
 SSP    97     Y     H     H             1.00 
 SSP    98     L     H     H             1.00 
 SSP    99     T     H     H             1.00 
 SSP   100     L     H     H             1.00 
 SSP   101     N     H     H             1.00 
 SSP   102     R     H     H             1.00 
 SSP   103     A     H     H             1.00 
 SSP   104     A     H     H             1.00 
 SSP   105     I     H     H             1.00 
 SSP   106     D     H     H             1.00 
 SSP   107     S     H     H             1.00 
 SSP   108     G     C     C             1.00 
 SSP   109     L     C     C             1.00 
 SSP   110     V     C     C             1.00 
 SSP   111     D     C     C             1.00 
 SSP   112     M     E     C             1.00 
 SSP   113     I     E     C             1.00 
 SSP   114     D     E     C             1.00 
 SSP   115     L     E     C             1.00 
 SSP   116     E     E     C             1.00 
 SSP   117     L     H     C             1.00 
 SSP   118     F     H     C             1.00 
 SSP   119     T     H     C             1.00 
 SSP   120     G     C     C             1.00 
 SSP   121     D     H     H             1.00 
 SSP   122     A     H     H             1.00 
 SSP   123     D     H     H             1.00 
 SSP   124     V     H     H             1.00 
 SSP   125     K     H     H             1.00 
 SSP   126     A     H     H             1.00 
 SSP   127     T     H     H             1.00 
 SSP   128     V     H     H             1.00 
 SSP   129     D     H     H             1.00 
 SSP   130     Y     H     H             1.00 
 SSP   131     A     H     H             1.00 
 SSP   132     H     H     H             1.00 
 SSP   133     A     H     H             1.00 
 SSP   134     H     C     C             1.00 
 SSP   135     N     C     C             1.00 
 SSP   136     V     C     C             1.00 
 SSP   137     Y     E     C             1.00 
 SSP   138     V     E     C             1.00 
 SSP   139     V     E     C             1.00 
 SSP   140     M     E     C             1.00 
 SSP   141     S     E     C             1.00 
 SSP   142     N     E     C             1.00 
 SSP   143     H     E     C             1.00 
 SSP   144     D     E     E             1.00 
 SSP   145     F     C     C             1.00 
 SSP   146     H     C     C             1.00 
 SSP   147     Q     C     C             1.00 
 SSP   148     T     C     C             1.00 
 SSP   149     P     C     C             1.00 
 SSP   150     S     C     C             1.00 
 SSP   151     A     H     H             1.00 
 SSP   152     E     H     H             1.00 
 SSP   153     E     H     H             1.00 
 SSP   154     M     H     H             1.00 
 SSP   155     V     H     H             1.00 
 SSP   156     S     H     H             1.00 
 SSP   157     R     H     H             1.00 
 SSP   158     L     H     H             1.00 
 SSP   159     R     H     H             1.00 
 SSP   160     K     H     H             1.00 
 SSP   161     M     H     H             1.00 
 SSP   162     Q     H     H             1.00 
 SSP   163     A     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              67.5      84.1      4.2     80.6     48.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        59.8      87.8      4.2     47.9     48.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           11              45.5               9.1 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     123    100.0     67.5 
 
 BIN  0.00 - 1.00      1.00     123    100.0     67.5 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         121             121           121            252 
 ALL CONTACTS (< 8.0A)     497             543           497           1350 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       497        297   59.76   54.70   22.00       0     0.00         543      1350  |   1-9999 
 RES CONTACTS       353        294   83.29   89.91   41.70       0     0.00         327       705  |   1-4    
 RES CONTACTS        21          2    9.52    5.56    2.56       0     0.00          36        78  |   5-8    
 RES CONTACTS       123          1    0.81    0.56    0.18       0     0.00         180       567  |   9-9999 
 
 
 
# WARNING! TARGET 1934 atoms, MODEL 1569 atoms, 1569 common with TARGET 
           Number of atoms possible to evaluate: 609 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    63.84           59.9   242    48.2   502     ARMSMC  
     SECONDARY STRUCTURE . .    50.68           70.0   150    52.1   288     ARMSMC  
     SURFACE . . . . . . . .    63.59           61.6    99    42.7   232     ARMSMC  
     BURIED  . . . . . . . .    64.01           58.7   143    53.0   270     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   209     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   187     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   127     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    98     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   154     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    92     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    78     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    49     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    37     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   40 - 56   17   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15     42 - 56       4.91     5.92 
  LCS LOCAL_SCORE:             84.78 
 
 FRAGMENT  2   58 - 163  106  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    32    131 - 162      4.96    26.91 
  LONGEST_CONTINUOUS_SEGMENT    32    132 - 163      4.86    27.12 
  LCS LOCAL_SCORE:             25.58 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   40 - 56   17   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     46 - 52       1.91     7.41 
  LCS LOCAL_SCORE:             33.91 
 
 FRAGMENT  2   58 - 163  106  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    143 - 163      1.98    28.02 
  LCS LOCAL_SCORE:             12.77 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   40 - 56   17   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     48 - 52       0.55     7.44 
  LCS LOCAL_SCORE:             24.57 
 
 FRAGMENT  2   58 - 163  106  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    149 - 163      0.89    27.38 
  LCS LOCAL_SCORE:              8.10 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      40       A     4    4   10       C        1   1   1   1   1   2   2   3   4   5   6   6   7   8   9   9  13  14  15  17  
 LCS      41       T     4    4   10       C        1   1   1   1   2   2   3   4   4   5   6   6   7   8   9  11  13  14  15  17  
 LCS      42       F     4    5   15       C        1   1   1   1   2   2   3   4   4   5   6   6   7   8   9  11  13  14  15  17  
 LCS      43       D     4    5   15       C        1   1   1   1   1   2   2   3   4   5   6   6   7   8  10  11  13  14  15  17  
 LCS      44       I     4    5   15       E        1   1   1   1   1   2   3   3   4   4   5   6   7   8  10  11  13  14  15  17  
 LCS      45       L     4    5   15       E        0   1   1   1   1   2   3   3   4   5   5   6   7   8  10  11  13  14  15  17  
 LCS      46       E     4    7   15       E        1   1   1   1   2   2   3   3   4   4   5   5   5   5  10  11  13  14  15  17  
 LCS      47       W     3    7   15       E        1   1   1   1   1   2   3   3   4   4   5   5   6   8  10  11  13  14  15  17  
 LCS      48       R     5    7   15       E        1   1   1   2   2   2   3   3   4   4   5   5   5   8  10  11  13  14  15  17  
 LCS      49       V     5    7   15       H        1   1   1   2   2   2   3   3   4   4   5   5   6   8  10  11  13  14  15  17  
 LCS      50       D     5    7   15       H        1   1   1   2   2   2   3   3   4   4   5   5   5   5   5   5   6   6  15  16  
 LCS      51       H     5    7   15       H        1   1   1   2   2   2   3   3   4   4   5   5   5   5   5   5   6  13  15  15  
 LCS      52       F     5    7   15       C        1   1   1   2   2   2   3   3   4   4   5   5   5   8  10  11  13  14  15  17  
 LCS      53       M     4    6   15       C        1   1   1   2   2   2   3   5   7   8   9  10  11  11  12  12  13  14  15  17  
 LCS      54       D     4    5   15       C        1   1   1   1   1   2   2   4   5   6   7   7   9  10  12  12  13  14  15  17  
 LCS      55       I     4    5   15       C        1   1   1   1   1   2   2   3   4   7   7   7   9   9  10  11  13  14  15  17  
 LCS      56       A     3    5   15       C        1   1   1   1   3   3   5   5   7   7   7   9   9  10  12  12  13  14  15  17  
 LCS      57       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      58       T     8   15   25       H        2   2   4   5   5   5   6   6   7   7   9   9  10  11  11  12  13  14  15  17  
 LCS      59       Q     8   15   25       H        2   3   4   5   5   5   6   6   7   8   9   9  10  11  11  12  13  14  15  17  
 LCS      60       S     8   15   25       H        2   2   4   5   5   5   6   6   7   8   9   9  10  11  11  12  13  14  15  17  
 LCS      61       V    10   15   25       H        2   2   4   5   5   5   6   6   7   8   9  10  11  11  12  12  13  14  15  17  
 LCS      62       L    10   15   25       H        2   2   4   5   5   5   6   6   7   8   9   9  10  11  12  12  13  14  15  17  
 LCS      63       T    10   15   25       H        2   3   4   5   5   5   6   6   7   8   9   9  10  11  12  12  13  14  15  17  
 LCS      64       A    10   15   25       H        2   3   4   5   5   5   6   7   7   8   9  10  11  11  12  12  13  14  15  15  
 LCS      65       A    10   15   25       H        2   3   4   5   5   5   6   6   8   9  10  10  11  11  12  12  13  14  15  15  
 LCS      66       R    10   15   25       H        2   3   4   5   5   5   6   6   7   8   9  10  11  11  12  12  13  14  15  15  
 LCS      67       V    10   15   25       H        2   3   4   5   5   5   6   7   8   9  10  10  11  11  12  12  13  14  15  15  
 LCS      68       I    10   15   25       H        2   3   4   5   5   5   6   6   8   9  10  10  11  11  12  12  13  14  15  15  
 LCS      69       R    10   15   25       H        2   3   4   5   5   5   6   6   7   9  10  10  11  11  12  12  13  14  15  16  
 LCS      70       D    10   15   25       H        2   3   4   5   5   5   6   6   8   9  10  10  11  11  12  12  13  14  15  15  
 LCS      71       A    10   15   25       H        1   1   3   4   5   5   6   6   7   8  10  10  11  11  11  12  13  14  15  18  
 LCS      72       M     3   15   25       C        1   1   1   1   2   3   5   6   7   8   9   9  11  11  13  14  14  15  16  18  
 LCS      73       P     4    5   25       C        1   1   1   1   2   2   3   4   5   7   8   9  11  12  13  15  15  17  19  19  
 LCS      74       D     4    5   25       C        1   1   1   1   3   4   5   6   7   8  11  12  13  14  15  15  17  18  19  19  
 LCS      75       I     4    5   25       C        1   1   1   2   3   5   6   6   7   8  11  12  13  14  15  15  17  18  19  19  
 LCS      76       P     4    5   25       C        1   1   1   1   2   3   3   6   7   8  11  12  13  14  15  15  17  18  19  19  
 LCS      77       L     3    4   25       E        1   1   1   1   3   3   4   5   6   8  11  12  13  14  15  15  17  18  19  19  
 LCS      78       L     3    3   25       E        1   1   1   1   3   3   4   6   7   8  11  12  13  14  15  15  17  18  19  19  
 LCS      79       F     3    3   25       E        1   1   1   1   2   2   3   5   5   5  11  12  13  14  15  15  17  18  19  19  
 LCS      80       T     3    3   25       E        0   1   1   1   1   1   3   4   5   5   7   8  12  14  15  15  17  18  19  19  
 LCS      81       F     5    5   25       C        1   1   1   2   3   4   5   6   7   8  11  12  13  14  15  15  17  18  19  19  
 LCS      82       R     5    5   25       C        1   1   1   2   3   5   6   7   7   8  11  12  13  14  15  15  17  18  19  19  
 LCS      83       S     5    5   24       E        1   1   1   2   3   5   6   6   7   8  11  12  13  14  15  15  17  18  19  19  
 LCS      84       A     5    5   20       H        1   1   3   3   3   4   5   6   7   8  11  12  13  13  15  15  17  18  19  19  
 LCS      85       K     5    5   18       H        1   1   1   3   3   4   5   6   7   9  11  12  13  14  15  15  17  18  19  19  
 LCS      86       E     4    6   16       H        1   1   1   2   3   3   5   6   7   9  11  12  13  14  15  15  17  18  19  19  
 LCS      87       G     4    6   22       C        1   1   1   2   2   2   2   4   5   6   8  10  11  13  13  15  15  16  18  18  
 LCS      88       G     4    6   25       C        1   1   1   2   2   2   3   4   5   6   8   9  11  12  13  14  15  16  16  17  
 LCS      89       E     4    6   25       C        0   1   1   2   2   2   2   3   4   5   7   9  11  11  11  11  13  14  15  17  
 LCS      90       Q     3    6   25       E        0   1   1   2   3   3   5   6   7   9  10  10  11  11  12  12  14  14  16  17  
 LCS      91       T     3    6   25       C        0   1   1   2   3   5   5   6   7   9  10  10  11  13  13  14  15  16  16  17  
 LCS      92       I     3    4   25       C        0   1   1   1   3   3   5   6   8   9  10  10  11  13  13  15  15  16  18  18  
 LCS      93       T     5   16   25       C        1   1   3   3   4   5   6   7   8   9  10  10  11  13  13  15  15  17  18  18  
 LCS      94       T     7   16   25       H        1   1   3   4   4   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS      95       Q    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS      96       H    10   16   25       H        2   3   4   5   5   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  
 LCS      97       Y    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS      98       L    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS      99       T    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     100       L    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     101       N    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     102       R    10   16   25       H        2   3   4   5   5   5   6   7   8   9  10  10  13  14  15  15  17  18  19  19  
 LCS     103       A    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     104       A    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     105       I    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     106       D    10   16   25       H        2   3   4   5   5   5   6   7   8   9  10  10  11  13  15  15  17  18  19  19  
 LCS     107       S    10   16   25       H        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     108       G    10   16   25       C        2   3   4   5   5   5   6   7   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     109       L     3   15   25       C        1   1   1   1   3   4   5   6   8   9  11  12  13  14  15  15  17  18  19  19  
 LCS     110       V     4    7   25       C        1   1   1   1   2   3   5   6   8   9  10  12  13  14  15  15  17  18  19  19  
 LCS     111       D     4    7   25       C        1   1   1   1   2   3   5   6   8   9  10  10  11  13  14  15  17  18  19  19  
 LCS     112       M     4    7   25       E        1   1   1   1   2   3   3   3   4   6   7   8   9  10  11  13  14  16  16  17  
 LCS     113       I     4    7   24       E        1   1   1   1   2   3   3   3   4   4   5   7   7   8  10  11  13  13  14  15  
 LCS     114       D     3    5   23       E        1   1   1   1   2   3   3   3   4   5   6   7   9  10  11  12  14  14  16  17  
 LCS     115       L     3    5   17       E        1   1   1   1   2   3   3   3   4   5   6   7   9  10  11  13  14  16  16  17  
 LCS     116       E     3    5   20       E        1   1   1   1   2   3   3   3   4   4   5   7   7   8  10  11  13  13  13  14  
 LCS     117       L     4    5   21       H        1   1   1   1   1   2   2   3   4   4   6   7   8  10  11  12  14  14  15  17  
 LCS     118       F     4    5   22       H        1   1   1   1   2   3   5   5   6   7   8   8   8   9   9   9  12  12  13  14  
 LCS     119       T     4    5   22       H        1   1   1   1   1   3   3   4   6   7   8   8   8  10  11  12  14  14  15  17  
 LCS     120       G     8   17   29       C        1   1   3   5   5   6   6   7   7   7   8   8   9  10  11  13  14  16  16  17  
 LCS     121       D    14   17   29       H        4   5   5   5   5   6   6   7   7   7   8   9  11  12  13  14  15  16  16  17  
 LCS     122       A    14   17   29       H        2   4   5   5   5   6   6   7   7   9   9  10  11  13  13  15  17  18  19  19  
 LCS     123       D    14   17   29       H        2   5   5   5   5   6   6   7   7   9  11  12  13  14  15  15  17  18  19  19  
 LCS     124       V    14   17   29       H        2   5   5   5   5   6   6   7   7   7   9  11  13  14  15  15  17  18  19  19  
 LCS     125       K    14   17   29       H        4   5   5   5   5   6   6   7   7   9   9  11  13  14  15  15  17  18  19  19  
 LCS     126       A    14   17   29       H        4   5   5   5   5   6   6   7   7   9  11  12  13  14  15  15  17  18  19  19  
 LCS     127       T    14   17   29       H        4   5   5   5   5   6   6   7   7   9   9  10  12  14  15  15  17  18  19  19  
 LCS     128       V    14   17   29       H        4   5   5   5   5   6   6   7   7   9   9  10  11  11  12  13  13  15  16  18  
 LCS     129       D    14   17   29       H        4   5   5   5   5   6   6   7   7   9   9  10  11  11  12  13  13  15  16  18  
 LCS     130       Y    14   17   29       H        4   5   5   5   5   6   6   7   7   9   9  10  11  11  12  13  13  14  14  15  
 LCS     131       A    14   17   32       H        4   5   5   5   5   6   6   7   7   9   9  10  11  11  12  13  13  14  15  17  
 LCS     132       H    14   17   32       H        4   5   5   5   5   6   6   7   7   9   9  10  11  11  12  13  13  14  15  17  
 LCS     133       A    14   17   32       H        4   5   5   5   5   6   6   7   7   9   9  10  11  11  12  13  13  14  14  15  
 LCS     134       H    14   17   32       C        4   5   5   5   5   6   6   7   7   9   9  10  11  11  12  13  13  14  14  15  
 LCS     135       N     4   17   32       C        1   1   1   3   5   6   6   7   7   7   8   9  11  11  12  13  13  14  14  15  
 LCS     136       V     4   17   32       C        1   1   1   2   5   5   6   7   7   9   9  10  11  11  12  13  13  14  15  17  
 LCS     137       Y     4    6   32       E        1   1   1   1   3   3   4   6   7   9   9  10  11  11  12  13  13  14  15  17  
 LCS     138       V     4    9   32       E        1   1   1   2   3   3   4   6   7   8   9  10  11  11  12  13  13  14  15  17  
 LCS     139       V     4    9   32       E        1   1   1   2   3   3   4   6   6   9   9  10  11  11  12  13  13  14  14  17  
 LCS     140       M     4    9   32       E        1   1   1   2   3   3   4   6   6   8   9  10  11  11  12  13  13  14  15  17  
 LCS     141       S     5   10   32       E        1   1   2   3   3   3   4   6   7   9   9  10  11  11  12  13  13  14  14  17  
 LCS     142       N     5   10   32       E        0   1   2   4   4   5   5   6   7   9   9  10  11  11  12  13  13  14  18  18  
 LCS     143       H     5   21   32       E        1   2   3   5   5   5   7   7   8   9   9  10  11  11  12  13  15  17  19  19  
 LCS     144       D     7   21   32       E        1   1   6   6   6   7   7   7   8   9   9  10  11  11  12  13  16  18  19  19  
 LCS     145       F     7   21   32       C        1   2   5   7   7   7   7   7   8   9   9  10  11  13  14  15  17  18  19  19  
 LCS     146       H     7   21   32       C        1   2   2   6   6   7   7   7   8   9   9  10  10  11  12  13  16  18  19  19  
 LCS     147       Q     7   21   32       C        1   2   5   7   7   7   7   7   8   8   9   9  10  11  12  13  13  14  14  15  
 LCS     148       T     7   21   32       C        1   2   5   7   7   7   7   7   8   8   9   9  10  11  12  13  13  14  14  15  
 LCS     149       P    15   21   32       C        1   4   6   7   7   7   7   7   8   8   9   9  10  10  12  13  13  14  14  15  
 LCS     150       S    15   21   32       C        1   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  13  14  14  15  
 LCS     151       A    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  13  14  14  15  
 LCS     152       E    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  13  14  14  15  
 LCS     153       E    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  13  14  14  15  
 LCS     154       M    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  13  14  14  15  
 LCS     155       V    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  13  14  14  15  
 LCS     156       S    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  13  14  14  15  
 LCS     157       R    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  13  17  18  19  19  
 LCS     158       L    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  10  11  15  16  18  19  19  
 LCS     159       R    15   21   32       H        2   4   6   7   7   7   7   7   8   8   9   9  10  13  15  15  17  18  19  19  
 LCS     160       K    15   21   32       H        2   4   6   7   7   7   7   7   8   8  11  12  13  14  15  15  17  18  19  19  
 LCS     161       M    15   21   32       H        2   4   6   7   7   7   7   7   8   8  10  12  13  14  15  15  17  18  19  19  
 LCS     162       Q    15   21   32       H        2   3   6   7   7   7   7   7   8   8   9  11  12  14  15  15  17  18  19  19  
 LCS     163       A    15   21   32       H        2   4   6   7   7   7   7   7   8   8  11  12  13  14  15  15  17  18  19  19  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.54 
 
 NUMBER_OF_CA_Tg:  252      NUMBER_OF_CA_Pr:  123      PERCENT_OF_CA:  48.81  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      11      13      16      18      18      19      20      20      22      25      28      31      34      36      38      40      43      46      48      49  
 GDT PERCENT_OF_CA_Pr    8.94   10.57   13.01   14.63   14.63   15.45   16.26   16.26   17.89   20.33   22.76   25.20   27.64   29.27   30.89   32.52   34.96   37.40   39.02   39.84 
 GDT PERCENT_OF_CA_Tg    4.37    5.16    6.35    7.14    7.14    7.54    7.94    7.94    8.73    9.92   11.11   12.30   13.49   14.29   15.08   15.87   17.06   18.25   19.05   19.44 
 GDT FRAGMENT: Beg-End 121-134 121-134 144-163 145-163 145-163 145-163 144-163 144-163  68-111  65-111  74-160  74-163  74-163  74-163  74-163  74-163  74-163  74-163  73-163  73-163 
 GDT RMS_LOCAL           0.28    0.61    0.95    1.30    1.30    1.47    1.71    1.71    3.51    3.86    4.22    4.46    4.78    5.04    5.13    5.37    5.68    6.00    6.22    6.32 
 GDT RMS_ALL_CA         28.17   27.49   27.78   28.92   28.92   29.00   28.63   28.63   22.41   21.86   21.70   21.55   21.49   21.46   21.47   21.50   21.55   21.60   21.53   21.49 
 
 
 TEST (CA)  RMS =  18.15               (Number of atoms:  123) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   18.15        123    48.8   252     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1476                            CRMSCA  
     SECONDARY STRUCTURE . .   16.36         76    52.8   144     CRMSCA  
     SURFACE . . . . . . . .   18.61         51    43.6   117     CRMSCA  
     BURIED  . . . . . . . .   17.82         72    53.3   135     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   18.18        609    48.8  1247     CRMSMC  
     SECONDARY STRUCTURE . .   16.40        379    52.6   720     CRMSMC  
     SURFACE . . . . . . . .   18.55        251    43.4   578     CRMSMC  
     BURIED  . . . . . . . .   17.92        358    53.5   669     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   19.04        117    12.6   926     CRMSSC  
     RELIABLE SIDE CHAINS  .   19.04        117    15.2   768     CRMSSC  
     SECONDARY STRUCTURE . .   17.23         75    13.3   563     CRMSSC  
     SURFACE . . . . . . . .   19.86         47    10.4   452     CRMSSC  
     BURIED  . . . . . . . .   18.46         70    14.8   474     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   18.18        609    31.5  1934     CRMSALL 
     SECONDARY STRUCTURE . .   16.40        379    33.3  1139     CRMSALL 
     SURFACE . . . . . . . .   18.55        251    27.3   920     CRMSALL 
     BURIED  . . . . . . . .   17.92        358    35.3  1014     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.843      1.000       0.500    123    48.8   252     ERRCA  
     SECONDARY STRUCTURE . .   15.222      1.000       0.500     76    52.8   144     ERRCA  
     SURFACE . . . . . . . .   17.367      1.000       0.500     51    43.6   117     ERRCA  
     BURIED  . . . . . . . .   16.472      1.000       0.500     72    53.3   135     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.867      1.000       0.500    609    48.8  1247     ERRMC  
     SECONDARY STRUCTURE . .   15.262      1.000       0.500    379    52.6   720     ERRMC  
     SURFACE . . . . . . . .   17.297      1.000       0.500    251    43.4   578     ERRMC  
     BURIED  . . . . . . . .   16.565      1.000       0.500    358    53.5   669     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.626      1.000       0.500    117    12.6   926     ERRSC  
     RELIABLE SIDE CHAINS  .   17.626      1.000       0.500    117    15.2   768     ERRSC  
     SECONDARY STRUCTURE . .   16.018      1.000       0.500     75    13.3   563     ERRSC  
     SURFACE . . . . . . . .   18.490      1.000       0.500     47    10.4   452     ERRSC  
     BURIED  . . . . . . . .   17.045      1.000       0.500     70    14.8   474     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.867      1.000       0.500    609    31.5  1934     ERRALL 
     SECONDARY STRUCTURE . .   15.262      1.000       0.500    379    33.3  1139     ERRALL 
     SURFACE . . . . . . . .   17.297      1.000       0.500    251    27.3   920     ERRALL 
     BURIED  . . . . . . . .   16.565      1.000       0.500    358    35.3  1014     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         2        28     123     252   DISTCA 
CA  (P)      0.00      0.00      0.00      0.79     11.11             252   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.79      8.11                   DISTCA 
 
ALL (N)         0         0         0         4       129     609    1934   DISTALL 
ALL (P)      0.00      0.00      0.00      0.21      6.67            1934   DISTALL 
ALL (RMS)    0.00      0.00      0.00      4.59      7.96                   DISTALL 
 
 
 
 
END of the results output 
