 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 123 , MODEL 123 , TARGET 216 
#          The number of residues possible to evaluate: 123 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    87     A     H     C             1.00 
 SSP    88     E     H     C             1.00 
 SSP    89     L     H     H             1.00 
 SSP    90     I     H     H             1.00 
 SSP    91     N     H     H             1.00 
 SSP    92     N     H     H             1.00 
 SSP    93     L     C     H             1.00 
 SSP    94     G     C     H             1.00 
 SSP    95     T     C     H             1.00 
 SSP    96     I     C     H             1.00 
 SSP    97     A     C     H             1.00 
 SSP    98     K     C     H             1.00 
 SSP    99     S     C     C             1.00 
 SSP   100     G     C     C             1.00 
 SSP   101     T     H     C             1.00 
 SSP   102     K     H     C             1.00 
 SSP   103     A     H     C             1.00 
 SSP   104     F     H     C             1.00 
 SSP   105     M     H     E             1.00 
 SSP   106     E     H     E             1.00 
 SSP   107     A     H     E             1.00 
 SSP   108     L     H     E             1.00 
 SSP   109     S     H     C             1.00 
 SSP   110     A     H     C             1.00 
 SSP   111     G     C     C             1.00 
 SSP   112     A     C     C             1.00 
 SSP   113     D     C     C             1.00 
 SSP   114     V     H     C             1.00 
 SSP   115     S     H     C             1.00 
 SSP   116     M     H     E             1.00 
 SSP   117     I     H     E             1.00 
 SSP   118     G     H     E             1.00 
 SSP   119     Q     H     E             1.00 
 SSP   120     F     H     C             1.00 
 SSP   121     G     C     C             1.00 
 SSP   122     V     C     C             1.00 
 SSP   123     G     H     C             1.00 
 SSP   124     F     H     C             1.00 
 SSP   125     Y     H     H             1.00 
 SSP   126     S     H     H             1.00 
 SSP   127     L     H     H             1.00 
 SSP   128     F     H     C             1.00 
 SSP   129     L     H     C             1.00 
 SSP   130     V     C     C             1.00 
 SSP   131     A     E     C             1.00 
 SSP   132     D     E     H             1.00 
 SSP   133     R     E     H             1.00 
 SSP   134     V     E     H             1.00 
 SSP   135     Q     E     H             1.00 
 SSP   136     V     E     H             1.00 
 SSP   137     I     E     C             1.00 
 SSP   138     S     E     C             1.00 
 SSP   139     K     E     C             1.00 
 SSP   140     S     C     C             1.00 
 SSP   141     N     C     C             1.00 
 SSP   142     D     C     C             1.00 
 SSP   143     D     C     C             1.00 
 SSP   144     E     C     H             1.00 
 SSP   145     Q     E     H             1.00 
 SSP   146     Y     E     H             1.00 
 SSP   147     I     E     H             1.00 
 SSP   148     W     E     C             1.00 
 SSP   149     E     E     C             1.00 
 SSP   150     S     E     C             1.00 
 SSP   151     N     C     C             1.00 
 SSP   152     A     C     C             1.00 
 SSP   153     G     C     C             1.00 
 SSP   154     G     C     C             1.00 
 SSP   155     S     E     C             1.00 
 SSP   156     F     E     C             1.00 
 SSP   157     T     E     C             1.00 
 SSP   158     V     E     C             1.00 
 SSP   159     T     E     C             1.00 
 SSP   160     L     E     C             1.00 
 SSP   161     D     C     C             1.00 
 SSP   162     E     C     C             1.00 
 SSP   163     V     C     C             1.00 
 SSP   164     N     C     C             1.00 
 SSP   165     E     C     C             1.00 
 SSP   166     R     C     C             1.00 
 SSP   167     I     C     C             1.00 
 SSP   168     G     C     C             1.00 
 SSP   169     R     C     E             1.00 
 SSP   170     G     E     E             1.00 
 SSP   171     T     E     E             1.00 
 SSP   172     I     E     E             1.00 
 SSP   173     L     E     E             1.00 
 SSP   174     R     E     E             1.00 
 SSP   175     L     E     C             1.00 
 SSP   176     F     E     C             1.00 
 SSP   177     L     E     C             1.00 
 SSP   178     K     C     C             1.00 
 SSP   179     D     C     E             1.00 
 SSP   180     D     C     E             1.00 
 SSP   181     Q     C     E             1.00 
 SSP   182     L     H     E             1.00 
 SSP   183     E     H     E             1.00 
 SSP   184     Y     H     E             1.00 
 SSP   185     L     H     C             1.00 
 SSP   186     E     C     C             1.00 
 SSP   187     E     H     C             1.00 
 SSP   188     K     H     C             1.00 
 SSP   189     R     H     C             1.00 
 SSP   190     I     H     C             1.00 
 SSP   191     K     H     C             1.00 
 SSP   192     E     H     H             1.00 
 SSP   193     V     H     H             1.00 
 SSP   194     I     H     H             1.00 
 SSP   195     K     H     H             1.00 
 SSP   196     R     H     H             1.00 
 SSP   197     H     H     H             1.00 
 SSP   198     S     C     H             1.00 
 SSP   199     E     C     H             1.00 
 SSP   200     F     C     H             1.00 
 SSP   201     V     C     C             1.00 
 SSP   202     A     C     H             1.00 
 SSP   203     Y     C     H             1.00 
 SSP   204     P     C     H             1.00 
 SSP   205     I     E     H             1.00 
 SSP   206     Q     E     H             1.00 
 SSP   207     L     E     C             1.00 
 SSP   208     V     C     C             1.00 
 SSP   209     V     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              38.2      28.9     15.6     63.0     56.9 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        34.5      34.1     22.2     43.3     56.9 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           11              36.4              54.5 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     123    100.0     38.2 
 
 BIN  0.00 - 1.00      1.00     123    100.0     38.2 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         110             110           110            215 
 ALL CONTACTS (< 8.0A)     524             380           524           1099 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       524        223   42.56   58.68   20.29       0     0.00         380      1099  |   1-9999 
 RES CONTACTS       265        208   78.49   78.79   35.19       0     0.00         264       591  |   1-4    
 RES CONTACTS        44          5   11.36   22.73   10.00       0     0.00          22        50  |   5-8    
 RES CONTACTS       215         10    4.65   10.64    2.18       0     0.00          94       458  |   9-9999 
 
 
 
# WARNING! TARGET 1695 atoms, MODEL 1372 atoms, 1323 common with TARGET 
           Number of atoms possible to evaluate: 592 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    87.18           38.5   244    56.7   430     ARMSMC  
     SECONDARY STRUCTURE . .    84.39           42.1   145    58.9   246     ARMSMC  
     SURFACE . . . . . . . .    89.55           35.0   120    54.1   222     ARMSMC  
     BURIED  . . . . . . . .    84.83           41.9   124    59.6   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   184     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   170     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   110     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    94     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    90     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   142     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   112     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    88     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    48     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    34     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   87 - 209  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23    107 - 129      4.98    25.14 
  LONGEST_CONTINUOUS_SEGMENT    23    135 - 157      4.92    23.05 
  LCS LOCAL_SCORE:             16.29 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   87 - 209  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    188 - 198      1.84    19.50 
  LONGEST_CONTINUOUS_SEGMENT    11    189 - 199      1.33    19.36 
  LCS LOCAL_SCORE:              5.38 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   87 - 209  123  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    189 - 198      0.98    18.91 
  LCS LOCAL_SCORE:              3.92 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      87       A     6    8   19       H        1   2   2   3   4   5   6   6   6   7   8   9  10  10  10  11  12  12  13  14  
 LCS      88       E     6    8   19       H        1   2   2   3   4   5   6   6   6   7   8   9  10  10  10  11  12  12  13  14  
 LCS      89       L     6    8   19       H        1   2   2   3   4   5   6   6   6   7   8   9  10  10  10  11  12  12  13  14  
 LCS      90       I     6    8   19       H        1   2   2   3   4   5   6   6   6   7   8   9  10  10  10  11  12  12  13  14  
 LCS      91       N     6    8   19       H        1   2   2   3   4   5   6   6   6   7   8   9  10  10  10  11  12  12  13  14  
 LCS      92       N     6    8   19       H        1   2   2   3   4   5   6   6   6   7   8   9  10  10  10  11  12  12  15  16  
 LCS      93       L     5    8   19       C        1   1   2   3   4   5   6   6   6   7   8   9  10  10  10  11  12  14  18  19  
 LCS      94       G     5    8   19       C        1   1   2   3   3   4   5   5   6   7   8   9  10  10  10  11  12  12  14  15  
 LCS      95       T     4    5   19       C        1   1   2   2   2   2   4   5   5   6   6   9  10  12  13  14  17  18  19  19  
 LCS      96       I     4    5   19       C        1   1   2   2   3   5   6   7   9  10  11  12  12  12  14  16  18  18  19  20  
 LCS      97       A     4    5   19       C        1   1   2   3   4   5   6   7   9  10  11  12  12  12  14  16  18  18  19  20  
 LCS      98       K     3    4   19       C        1   1   1   2   2   5   6   6   6   7   8   9  10  11  13  16  18  18  19  20  
 LCS      99       S     4    5   19       C        1   1   2   3   4   5   6   6   6   7   8   9  11  12  13  16  17  18  19  20  
 LCS     100       G     4    5   19       C        1   1   1   2   2   3   6   6   6   7   8   9  10  10  10  12  13  14  16  18  
 LCS     101       T     4    5   19       H        1   1   2   3   4   5   6   6   6   7   8   9  10  10  11  12  13  16  16  19  
 LCS     102       K     4    5   19       H        1   1   1   2   2   4   5   6   6   7   8   9  11  12  13  14  15  16  18  20  
 LCS     103       A     3    5   19       H        1   1   1   2   2   3   3   4   6   7   8   9  10  12  12  14  15  16  17  19  
 LCS     104       F     3    4   19       H        1   1   1   1   2   3   3   5   6   7   8   9  11  12  13  14  15  16  18  20  
 LCS     105       M     3    4   19       H        0   1   1   1   2   3   3   6   6   7   8   9  11  12  13  14  16  18  18  20  
 LCS     106       E     3    3   17       H        1   1   1   1   1   2   3   3   4   5   6   8   9  11  12  14  16  16  18  20  
 LCS     107       A     3    3   23       H        1   1   1   1   1   2   4   4   6   7   8   9  11  12  13  16  17  18  19  20  
 LCS     108       L     3    3   23       H        1   1   1   1   1   2   4   4   6   7   9   9  11  13  13  16  18  18  19  20  
 LCS     109       S     3    4   23       H        1   1   1   1   1   2   3   3   3   4   4   8  10  13  14  16  18  18  19  20  
 LCS     110       A     3    4   23       H        1   1   1   1   1   2   3   3   5   6   7   9  10  11  12  13  16  16  18  18  
 LCS     111       G     3    4   23       C        1   1   1   1   1   3   4   4   6   6   7   9  10  12  12  14  16  17  18  19  
 LCS     112       A     4    4   23       C        1   1   1   1   1   2   2   4   5   5   6   7   8  10  12  13  14  16  18  18  
 LCS     113       D     4    4   23       C        1   1   1   1   1   3   4   4   5   6   7   9  10  12  13  16  17  18  19  20  
 LCS     114       V     4    4   23       H        1   1   1   1   2   3   4   4   6   7   9  11  12  13  14  16  18  18  19  21  
 LCS     115       S     4    5   23       H        1   1   1   2   2   3   4   5   6   7   9  11  12  13  14  16  18  18  20  22  
 LCS     116       M     3    5   23       H        1   1   1   2   4   5   5   6   6   9  10  12  13  16  17  19  20  21  22  23  
 LCS     117       I     3    5   23       H        1   1   2   4   4   5   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     118       G     3    5   23       H        1   2   3   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     119       Q     4    6   23       H        1   1   2   2   2   2   6   6   7   9  11  12  12  13  15  18  20  21  22  23  
 LCS     120       F     4    6   23       H        1   1   2   2   3   5   5   6   7   9  10  12  12  13  14  16  18  18  19  20  
 LCS     121       G     4    6   23       C        1   1   2   2   2   5   6   7   9  10  11  12  12  13  14  16  18  18  19  20  
 LCS     122       V     4    6   23       C        1   1   2   2   2   3   5   7   8  10  11  12  12  12  14  16  18  18  19  20  
 LCS     123       G     6    7   23       H        1   1   2   2   3   4   5   6   7   8  10  12  12  13  14  16  18  18  19  20  
 LCS     124       F     6    7   23       H        1   2   2   2   3   5   6   7   9  10  11  12  12  13  14  17  20  21  22  23  
 LCS     125       Y     6    7   23       H        1   2   2   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     126       S     6    7   23       H        1   2   2   2   4   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     127       L     6    7   23       H        1   2   2   2   3   5   6   7   9  10  11  12  13  16  17  19  20  21  22  23  
 LCS     128       F     6    7   23       H        1   2   2   2   3   5   6   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     129       L     4    7   23       H        1   1   1   2   3   5   6   7   9  10  11  12  12  13  14  16  18  18  19  21  
 LCS     130       V     4    5   20       C        1   1   1   1   3   5   6   7   9  10  11  12  12  13  14  16  18  18  19  20  
 LCS     131       A     4    5   20       E        1   1   1   2   3   5   6   7   9  10  11  12  12  13  14  16  18  18  19  20  
 LCS     132       D     4    5   20       E        1   1   1   2   3   5   6   7   9  10  11  12  12  13  14  16  18  19  21  22  
 LCS     133       R     4    4   20       E        1   1   1   3   4   5   6   7   9  10  11  12  12  12  14  16  18  19  20  20  
 LCS     134       V     4    4   19       E        1   1   1   1   1   2   4   7   8   9  10  11  13  13  14  17  18  19  20  22  
 LCS     135       Q     3    3   23       E        1   1   1   2   4   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     136       V     4    5   23       E        1   1   1   2   2   5   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     137       I     4    6   23       E        1   1   1   2   2   3   4   5   8  10  12  12  13  14  17  18  19  21  22  23  
 LCS     138       S     4    7   23       E        1   2   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     139       K     4    7   23       E        1   1   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     140       S     5    7   23       C        1   1   2   2   4   5   6   7   8   9  11  12  13  16  17  19  20  21  22  23  
 LCS     141       N     5    7   23       C        1   1   2   2   3   4   4   7   8   9  11  12  13  16  17  19  20  21  22  23  
 LCS     142       D     5    7   23       C        1   1   2   2   2   3   3   4   6   7   9  11  13  16  17  19  20  21  22  23  
 LCS     143       D     5    7   23       C        1   1   2   2   2   3   3   4   6   7   9  11  13  16  17  19  20  21  22  23  
 LCS     144       E     5    7   23       C        0   1   2   2   2   3   3   4   5   5   6   8  10  12  16  19  19  21  22  23  
 LCS     145       Q     3    4   23       E        0   1   1   1   2   2   3   5   6   7   9  11  13  16  17  19  20  21  22  23  
 LCS     146       Y     3    8   23       E        1   1   2   3   4   5   6   7   8   8   9  11  13  16  17  19  20  21  22  23  
 LCS     147       I     4    8   23       E        1   1   2   3   4   4   5   6   8   9  10  12  13  16  17  19  20  21  22  23  
 LCS     148       W     5    8   23       E        1   1   2   3   4   5   6   7   8   8   9  11  13  16  17  19  20  21  22  23  
 LCS     149       E     5    8   23       E        1   1   2   3   4   5   6   7   8  10  11  12  13  16  17  19  20  21  22  23  
 LCS     150       S     5    8   23       E        1   1   2   3   4   5   6   7   9  10  11  12  13  16  17  19  20  21  22  23  
 LCS     151       N     5    8   23       C        1   1   2   3   4   5   6   7   8   9  11  12  12  12  14  18  20  21  22  23  
 LCS     152       A     5    8   23       C        1   1   2   3   4   5   6   7   8  10  12  12  13  16  17  19  20  21  22  23  
 LCS     153       G     3    8   23       C        1   1   2   2   3   5   6   7   8   8   9  11  13  16  17  19  20  21  22  23  
 LCS     154       G     4    5   23       C        1   1   1   1   2   5   6   7   8   8   9  10  11  12  13  14  16  17  18  21  
 LCS     155       S     4    5   23       E        1   1   1   2   3   5   6   7   8   8   9  10  11  12  13  14  16  17  18  21  
 LCS     156       F     4    5   23       E        1   1   1   3   4   5   6   7   8   8  11  12  12  13  14  16  18  18  19  21  
 LCS     157       T     4    5   23       E        1   1   1   3   4   5   6   7   9  10  11  12  12  13  14  16  18  18  19  20  
 LCS     158       V     4    7   18       E        0   1   2   2   3   5   6   7   9  10  11  12  12  13  14  16  18  18  19  20  
 LCS     159       T     4    7   18       E        1   1   2   2   2   3   4   5   9  10  11  12  12  12  14  16  18  18  19  20  
 LCS     160       L     5    7   18       E        1   1   2   2   2   3   5   7   9  10  11  12  12  13  14  16  18  18  19  20  
 LCS     161       D     5    7   18       C        1   1   2   2   3   5   6   7   9  10  11  12  12  13  14  16  18  18  19  20  
 LCS     162       E     5    7   18       C        1   1   2   2   2   5   6   7   9  10  11  12  12  13  14  16  18  18  20  21  
 LCS     163       V     5    7   18       C        1   1   2   2   2   3   4   5   6   7   9  10  11  13  14  16  18  18  20  21  
 LCS     164       N     5    7   18       C        1   2   2   2   2   3   3   4   5   6   7   9  10  11  13  16  18  18  19  20  
 LCS     165       E     5    7   18       C        1   2   2   2   2   3   4   5   6   6   8   9  10  11  14  15  18  18  19  19  
 LCS     166       R     5    7   18       C        1   2   2   2   2   3   4   5   6   6   8   9  10  11  12  13  16  18  19  19  
 LCS     167       I     5    7   16       C        1   2   2   2   2   3   4   4   5   6   8   9  10  11  12  13  15  16  18  18  
 LCS     168       G     5   10   13       C        1   2   2   2   2   4   4   4   5   6   8   9  10  11  12  13  15  15  16  18  
 LCS     169       R     7   10   13       C        1   1   3   3   4   4   4   4   5   6   8   9  10  11  12  13  15  15  18  18  
 LCS     170       G     7   10   13       E        1   3   3   3   4   4   4   4   5   6   8   9  10  11  12  13  15  16  18  18  
 LCS     171       T     7   10   13       E        1   3   3   3   4   4   4   4   4   5   6   9  10  12  12  15  17  18  22  23  
 LCS     172       I     7   10   13       E        1   3   3   3   4   4   4   4   5   6   7   9  11  12  17  19  20  21  22  23  
 LCS     173       L     7   10   13       E        1   3   3   3   4   4   4   6   6   7   8   9  10  12  13  14  16  20  22  23  
 LCS     174       R     7   10   13       E        1   3   3   3   4   4   6   6   6   7   9  10  11  12  13  14  15  17  18  18  
 LCS     175       L     7   10   13       E        1   3   3   3   4   4   4   4   6   7   8   9  10  10  10  12  14  16  18  18  
 LCS     176       F     7   10   13       E        1   3   3   3   4   4   4   4   5   5   7   7   8   8   8  11  11  14  16  18  
 LCS     177       L     4   10   13       E        1   1   2   3   4   4   4   4   4   4   6  10  10  11  12  13  14  16  17  18  
 LCS     178       K     4    5   17       C        1   1   1   1   1   2   2   3   4   5   8  10  10  11  12  13  14  16  17  18  
 LCS     179       D     4    5   17       C        1   1   1   1   1   2   2   3   3   5   6   7   9  11  12  12  13  14  17  18  
 LCS     180       D     4    5   17       C        1   1   1   1   1   2   4   4   5   6   6   7   8   8  10  11  12  13  15  18  
 LCS     181       Q     3    4   18       C        0   1   1   1   1   2   4   4   5   6   6   7   8   9  10  11  12  16  17  18  
 LCS     182       L     3    4   18       H        0   1   1   1   1   2   4   4   5   6   6   7   8  12  12  14  15  16  18  19  
 LCS     183       E     3    4   20       H        0   1   1   1   1   3   4   5   7   9   9  10  11  12  13  17  19  20  22  23  
 LCS     184       Y     3    6   21       H        0   1   1   2   3   5   6   7   8  10  12  12  13  16  17  19  20  21  22  23  
 LCS     185       L     3    6   21       H        0   1   1   2   3   4   6   7   8   9  11  12  13  16  17  19  20  21  22  23  
 LCS     186       E     3    6   21       C        1   1   1   2   3   4   6   7   8   9  11  12  13  16  17  19  20  21  22  23  
 LCS     187       E     3    6   21       H        1   1   1   1   2   2   4   4   7   8   9  12  13  16  17  19  20  21  22  23  
 LCS     188       K     3   11   21       H        1   1   1   1   2   4   6   7   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     189       R    10   11   21       H        1   1   4   5   6   6   7   8   9  10  12  12  13  16  17  18  20  21  22  22  
 LCS     190       I    10   11   21       H        3   3   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     191       K    10   11   21       H        3   3   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     192       E    10   11   21       H        3   3   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     193       V    10   11   21       H        3   3   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     194       I    10   11   21       H        3   3   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     195       K    10   11   21       H        3   3   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     196       R    10   11   21       H        3   3   4   4   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     197       H    10   11   21       H        3   3   4   4   5   5   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     198       S    10   11   21       C        1   3   4   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     199       E     5   11   21       C        1   1   3   5   6   6   7   8   9  10  12  12  13  16  17  19  20  21  22  23  
 LCS     200       F     4    7   21       C        1   1   1   1   3   4   6   6   7   9  11  12  13  16  17  19  20  21  22  23  
 LCS     201       V     4    7   21       C        1   1   1   2   4   6   7   8   8  10  12  12  13  16  17  19  20  21  22  23  
 LCS     202       A     3    4   21       C        1   1   1   1   2   5   6   8   8   9  12  12  13  16  17  19  20  21  22  23  
 LCS     203       Y     3    4   21       C        1   1   1   1   2   2   3   4   6   7   9  12  12  13  14  15  17  20  22  23  
 LCS     204       P     3    4   21       C        1   1   1   1   2   2   3   4   5   7   8   9  11  13  14  15  17  17  18  19  
 LCS     205       I     3    3   18       E        1   1   1   1   2   2   3   4   5   6   8   9  11  12  14  15  17  17  18  20  
 LCS     206       Q     4    4   16       E        1   1   1   1   2   2   3   3   4   6   8   8   9  10  12  13  15  16  18  18  
 LCS     207       L     4    4   13       E        1   1   1   1   2   2   3   4   5   6   8   8  10  10  12  14  15  17  18  18  
 LCS     208       V     4    4   13       C        1   1   1   1   1   1   2   4   6   7   9  10  11  12  13  14  15  17  18  18  
 LCS     209       V     4    4   13       C        1   1   1   1   1   2   3   4   6   7   9  10  11  12  13  14  15  17  18  18  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.27 
 
 NUMBER_OF_CA_Tg:  216      NUMBER_OF_CA_Pr:  123      PERCENT_OF_CA:  56.94  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       8       8       9      11      14      15      16      18      20      22      26      27      30      36      38      42      44      47      49      51  
 GDT PERCENT_OF_CA_Pr    6.50    6.50    7.32    8.94   11.38   12.20   13.01   14.63   16.26   17.89   21.14   21.95   24.39   29.27   30.89   34.15   35.77   38.21   39.84   41.46 
 GDT PERCENT_OF_CA_Tg    3.70    3.70    4.17    5.09    6.48    6.94    7.41    8.33    9.26   10.19   12.04   12.50   13.89   16.67   17.59   19.44   20.37   21.76   22.69   23.61 
 GDT FRAGMENT: Beg-End 190-197 190-197 190-198 118-195 118-199 118-199 118-201 118-201 117-199 117-201 117-202 117-202 117-201 116-202 116-202 116-202 116-202 116-202 116-203 116-203 
 GDT RMS_LOCAL           0.43    0.43    0.73    1.33    1.70    2.10    2.17    2.46    2.93    3.26    3.74    3.86    4.41    5.28    5.37    5.88    5.97    6.22    6.61    6.75 
 GDT RMS_ALL_CA         18.65   18.65   18.73   17.43   17.50   17.62   17.63   17.67   17.74   17.76   17.56   17.61   17.29   17.00   17.05   16.79   16.82   16.81   16.73   16.72 
 
 
 TEST (CA)  RMS =  16.15               (Number of atoms:  123) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   16.15        123    56.9   216     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1313                            CRMSCA  
     SECONDARY STRUCTURE . .   15.16         73    59.3   123     CRMSCA  
     SURFACE . . . . . . . .   17.39         61    54.5   112     CRMSCA  
     BURIED  . . . . . . . .   14.83         62    59.6   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   16.23        592    55.5  1067     CRMSMC  
     SECONDARY STRUCTURE . .   15.27        354    57.8   612     CRMSMC  
     SURFACE . . . . . . . .   17.42        294    53.2   553     CRMSMC  
     BURIED  . . . . . . . .   14.97        298    58.0   514     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   16.70        100    12.0   831     CRMSSC  
     RELIABLE SIDE CHAINS  .   16.70        100    13.8   723     CRMSSC  
     SECONDARY STRUCTURE . .   15.85         62    12.2   509     CRMSSC  
     SURFACE . . . . . . . .   18.10         50    12.0   417     CRMSSC  
     BURIED  . . . . . . . .   15.17         50    12.1   414     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.23        592    34.9  1695     CRMSALL 
     SECONDARY STRUCTURE . .   15.27        354    35.4  1001     CRMSALL 
     SURFACE . . . . . . . .   17.42        294    34.0   865     CRMSALL 
     BURIED  . . . . . . . .   14.97        298    35.9   830     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.392      1.000       0.500    123    56.9   216     ERRCA  
     SECONDARY STRUCTURE . .   13.601      1.000       0.500     73    59.3   123     ERRCA  
     SURFACE . . . . . . . .   15.594      1.000       0.500     61    54.5   112     ERRCA  
     BURIED  . . . . . . . .   13.209      1.000       0.500     62    59.6   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.473      1.000       0.500    592    55.5  1067     ERRMC  
     SECONDARY STRUCTURE . .   13.711      1.000       0.500    354    57.8   612     ERRMC  
     SURFACE . . . . . . . .   15.615      1.000       0.500    294    53.2   553     ERRMC  
     BURIED  . . . . . . . .   13.346      1.000       0.500    298    58.0   514     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.912      1.000       0.500    100    12.0   831     ERRSC  
     RELIABLE SIDE CHAINS  .   14.912      1.000       0.500    100    13.8   723     ERRSC  
     SECONDARY STRUCTURE . .   14.211      1.000       0.500     62    12.2   509     ERRSC  
     SURFACE . . . . . . . .   16.290      1.000       0.500     50    12.0   417     ERRSC  
     BURIED  . . . . . . . .   13.533      1.000       0.500     50    12.1   414     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.473      1.000       0.500    592    34.9  1695     ERRALL 
     SECONDARY STRUCTURE . .   13.711      1.000       0.500    354    35.4  1001     ERRALL 
     SURFACE . . . . . . . .   15.615      1.000       0.500    294    34.0   865     ERRALL 
     BURIED  . . . . . . . .   13.346      1.000       0.500    298    35.9   830     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         1         9        41     123     216   DISTCA 
CA  (P)      0.00      0.46      0.46      4.17     18.98             216   DISTCA 
CA  (RMS)    0.00      1.98      1.98      3.95      7.13                   DISTCA 
 
ALL (N)         0         1         9        49       201     592    1695   DISTALL 
ALL (P)      0.00      0.06      0.53      2.89     11.86            1695   DISTALL 
ALL (RMS)    0.00      1.98      2.42      3.99      7.22                   DISTALL 
 
 
 
 
END of the results output 
