 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 83 , MODEL 83 , TARGET 216 
#          The number of residues possible to evaluate: 83 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   131     A     E     C             1.00 
 SSP   132     D     E     E             1.00 
 SSP   133     R     E     E             1.00 
 SSP   134     V     E     E             1.00 
 SSP   135     Q     E     E             1.00 
 SSP   136     V     E     E             1.00 
 SSP   137     I     E     C             1.00 
 SSP   138     S     E     C             1.00 
 SSP   139     K     E     C             1.00 
 SSP   140     S     C     C             1.00 
 SSP   141     N     C     C             1.00 
 SSP   142     D     C     C             1.00 
 SSP   143     D     C     C             1.00 
 SSP   144     E     C     C             1.00 
 SSP   145     Q     E     C             1.00 
 SSP   146     Y     E     E             1.00 
 SSP   147     I     E     E             1.00 
 SSP   148     W     E     E             1.00 
 SSP   149     E     E     E             1.00 
 SSP   150     S     E     E             1.00 
 SSP   151     N     C     E             1.00 
 SSP   152     A     C     E             1.00 
 SSP   153     G     C     C             1.00 
 SSP  BREAK 
 SSP   155     S     E     C             1.00 
 SSP   156     F     E     E             1.00 
 SSP   157     T     E     E             1.00 
 SSP   158     V     E     E             1.00 
 SSP   159     T     E     E             1.00 
 SSP   160     L     E     E             1.00 
 SSP   161     D     C     E             1.00 
 SSP   162     E     C     E             1.00 
 SSP   163     V     C     E             1.00 
 SSP   164     N     C     E             1.00 
 SSP   165     E     C     C             1.00 
 SSP   166     R     C     C             1.00 
 SSP   167     I     C     E             1.00 
 SSP   168     G     C     E             1.00 
 SSP   169     R     C     E             1.00 
 SSP   170     G     E     E             1.00 
 SSP   171     T     E     E             1.00 
 SSP   172     I     E     E             1.00 
 SSP   173     L     E     C             1.00 
 SSP   174     R     E     C             1.00 
 SSP   175     L     E     H             1.00 
 SSP   176     F     E     H             1.00 
 SSP   177     L     E     H             1.00 
 SSP   178     K     C     C             1.00 
 SSP   179     D     C     C             1.00 
 SSP   180     D     C     C             1.00 
 SSP   181     Q     C     C             1.00 
 SSP   182     L     H     C             1.00 
 SSP   183     E     H     H             1.00 
 SSP   184     Y     H     H             1.00 
 SSP   185     L     H     H             1.00 
 SSP   186     E     C     H             1.00 
 SSP   187     E     H     H             1.00 
 SSP   188     K     H     H             1.00 
 SSP   189     R     H     H             1.00 
 SSP   190     I     H     H             1.00 
 SSP   191     K     H     H             1.00 
 SSP  BREAK 
 SSP   194     I     H     H             1.00 
 SSP   195     K     H     H             1.00 
 SSP   196     R     H     H             1.00 
 SSP   197     H     H     H             1.00 
 SSP   198     S     C     H             1.00 
 SSP   199     E     C     H             1.00 
 SSP   200     F     C     H             1.00 
 SSP   201     V     C     H             1.00 
 SSP   202     A     C     H             1.00 
 SSP   203     Y     C     H             1.00 
 SSP   204     P     C     H             1.00 
 SSP   205     I     E     H             1.00 
 SSP   206     Q     E     H             1.00 
 SSP   207     L     E     H             1.00 
 SSP   208     V     C     H             1.00 
 SSP   209     V     C     H             1.00 
 SSP   210     T     C     H             1.00 
 SSP   211     K     C     H             1.00 
 SSP   212     E     C     C             1.00 
 SSP   213     V     C     C             1.00 
 SSP   214     E     C     C             1.00 
 SSP   215     K     C     C             1.00 
 SSP   216     E     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              56.6      92.3     56.2     44.7     38.4 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        58.2      55.6     69.3     49.7     38.4 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            7              78.6              21.4 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      83    100.0     56.6 
 
 BIN  0.00 - 1.00      1.00      83    100.0     56.6 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          81              81            81            215 
 ALL CONTACTS (< 8.0A)     337             281           337           1099 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       337        172   51.04   61.21   15.65       0     0.00         281      1099  |   1-9999 
 RES CONTACTS       208        156   75.00   89.66   26.40       0     0.00         174       591  |   1-4    
 RES CONTACTS        31          3    9.68   15.79    6.00       0     0.00          19        50  |   5-8    
 RES CONTACTS        98         13   13.27   14.77    2.84       0     0.00          88       458  |   9-9999 
 
 
 
# WARNING! TARGET 1695 atoms, MODEL 1469 atoms, 1423 common with TARGET 
           Number of atoms possible to evaluate: 410 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    79.23           47.5   160    37.2   430     ARMSMC  
     SECONDARY STRUCTURE . .    65.80           55.1    78    31.7   246     ARMSMC  
     SURFACE . . . . . . . .    88.04           45.3    86    38.7   222     ARMSMC  
     BURIED  . . . . . . . .    67.58           50.0    74    35.6   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   184     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   170     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   110     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    94     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    90     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   142     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   112     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    88     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    48     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    34     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  131 - 153  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23    131 - 153      4.27     4.27 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  155 - 191  37   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    171 - 191      4.62    13.05 
  LCS LOCAL_SCORE:             52.08 
 
 FRAGMENT  3  194 - 216  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    194 - 206      4.59    16.99 
  LONGEST_CONTINUOUS_SEGMENT    13    197 - 209      4.95     9.71 
  LCS LOCAL_SCORE:             51.61 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  131 - 153  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    143 - 152      1.96     5.32 
  LCS LOCAL_SCORE:             38.00 
 
 FRAGMENT  2  155 - 191  37   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    155 - 162      1.94    26.80 
  LCS LOCAL_SCORE:             17.31 
 
 FRAGMENT  3  194 - 216  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    194 - 201      1.91    25.94 
  LCS LOCAL_SCORE:             24.95 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  131 - 153  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    132 - 139      0.96    10.69 
  LCS LOCAL_SCORE:             26.84 
 
 FRAGMENT  2  155 - 191  37   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    181 - 186      0.69    12.30 
  LONGEST_CONTINUOUS_SEGMENT     6    186 - 191      0.41    31.00 
  LCS LOCAL_SCORE:             12.56 
 
 FRAGMENT  3  194 - 216  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    194 - 199      0.99    29.94 
  LCS LOCAL_SCORE:             18.53 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     131       A     3    3   23       E        0   1   1   1   1   1   2   4   4   4   7   7  10  12  15  17  18  18  18  21  
 LCS     132       D     8    8   23       E        2   3   3   3   3   4   5   5   6   8  10  11  13  15  16  17  18  18  18  21  
 LCS     133       R     8    8   23       E        2   3   3   3   3   4   5   6   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     134       V     8    8   23       E        2   3   3   3   3   4   5   6   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     135       Q     8    8   23       E        2   3   3   3   3   4   5   6   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     136       V     8    8   23       E        2   3   3   3   3   4   5   5   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     137       I     8    8   23       E        1   3   3   3   3   4   5   6   7   9  10  11  13  15  16  17  18  18  18  21  
 LCS     138       S     8    8   23       E        1   3   3   3   3   4   5   5   6   6   8  10  12  13  15  16  17  18  18  21  
 LCS     139       K     8    8   23       E        1   1   2   3   3   4   5   6   7   9  10  11  12  15  16  17  18  18  18  21  
 LCS     140       S     3    8   23       C        1   1   1   2   3   4   5   6   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     141       N     4    8   23       C        1   1   2   3   4   4   5   6   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     142       D     4    9   23       C        1   1   1   3   4   5   5   6   7   9  10  12  13  15  16  17  18  18  18  18  
 LCS     143       D     4   10   23       C        1   1   1   2   4   5   5   6   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     144       E     4   10   23       C        1   1   1   2   3   5   5   6   7   9  10  12  13  15  16  17  18  18  18  21  
 LCS     145       Q     7   10   23       E        1   2   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  21  
 LCS     146       Y     7   10   23       E        1   3   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  20  
 LCS     147       I     7   10   23       E        1   3   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  21  
 LCS     148       W     7   10   23       E        1   3   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  21  
 LCS     149       E     7   10   23       E        1   3   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  21  
 LCS     150       S     7   10   23       E        1   3   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  21  
 LCS     151       N     7   10   23       C        1   2   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  21  
 LCS     152       A     4   10   23       C        1   1   3   4   5   6   7   8   9  10  11  12  13  14  16  17  18  18  18  21  
 LCS     153       G     3    9   23       C        1   1   2   3   5   6   7   8   8  10  11  12  13  15  16  17  18  18  18  21  
 LCS     154       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     155       S     5    8   17       E        1   2   2   2   3   3   5   6   7  10  11  12  13  15  16  17  18  18  18  21  
 LCS     156       F     5    8   17       E        1   2   2   2   3   3   3   4   6   9  11  12  13  15  16  17  18  18  18  21  
 LCS     157       T     5    8   17       E        1   2   2   2   3   3   3   4   7   8  10  12  13  15  16  17  18  18  18  21  
 LCS     158       V     5    8   17       E        1   2   2   2   3   3   3   4   5   5   6   6   7   8   8  16  18  18  18  18  
 LCS     159       T     5    8   17       E        1   2   2   2   3   3   3   4   5   5  10  12  13  15  16  17  18  18  18  18  
 LCS     160       L     4    8   17       E        1   1   1   2   2   3   3   4   5   5   6  12  13  15  16  17  18  18  18  18  
 LCS     161       D     4    8   17       C        1   1   1   2   3   3   3   4   7   9  10  12  13  15  16  17  18  18  18  18  
 LCS     162       E     3    8   17       C        1   1   1   2   3   3   3   4   6   6  10  12  13  15  16  17  18  18  18  18  
 LCS     163       V     3    5   17       C        1   1   1   1   2   2   3   4   5   7  10  12  13  15  16  17  18  18  18  18  
 LCS     164       N     3    5   17       C        1   1   3   3   4   6   7   8   8   9  10  11  12  14  16  17  18  18  18  21  
 LCS     165       E     3    5   17       C        1   1   1   3   4   6   7   8   8   9  10  11  13  15  16  17  18  18  18  21  
 LCS     166       R     4    5   17       C        1   3   3   4   5   6   7   8   8   9  10  12  13  15  16  17  18  18  18  20  
 LCS     167       I     4    5   17       C        1   2   3   4   5   5   5   6   6   8   9  10  11  12  13  15  18  18  18  21  
 LCS     168       G     4    7   17       C        1   1   1   2   3   3   4   4   4   5   6   6   7   7   8  10  12  12  12  13  
 LCS     169       R     4    7   17       C        1   1   2   2   3   3   4   4   4   4   4   6   7   7   8   9  10  10  10  12  
 LCS     170       G     5    7   17       E        1   2   2   2   2   3   4   4   4   4   5   6   7   7   8   9  10  10  10  12  
 LCS     171       T     5    7   21       E        1   2   2   2   3   3   4   4   4   4   6   6   7   8   8   9  10  10  16  17  
 LCS     172       I     5    7   21       E        1   2   2   2   3   3   4   4   4   4   7   7   9   9  12  15  15  15  17  17  
 LCS     173       L     5    7   21       E        1   2   2   2   3   4   6   6   8  10  11  12  13  13  14  15  15  15  17  17  
 LCS     174       R     5    7   21       E        1   2   2   2   2   4   4   6   6  10  11  12  13  13  14  15  15  15  17  17  
 LCS     175       L     4    7   21       E        1   1   1   2   3   3   4   6   6   7   9  11  11  13  14  15  15  15  17  17  
 LCS     176       F     4    4   21       E        1   1   1   1   3   3   4   7   9  10  11  12  13  13  14  15  15  15  18  21  
 LCS     177       L     3    3   21       E        1   2   3   4   5   5   6   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     178       K     3    4   21       C        1   1   1   2   3   4   6   7   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     179       D     3    4   21       C        1   3   3   4   5   6   7   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     180       D     3    4   21       C        1   1   2   4   4   6   7   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     181       Q     6    7   21       C        1   2   3   3   4   6   7   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     182       L     6    7   21       H        1   2   3   3   4   6   7   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     183       E     6    7   21       H        1   2   2   3   4   6   7   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     184       Y     6    7   21       H        1   2   2   3   4   5   7   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     185       L     6    7   21       H        1   2   2   3   4   5   6   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     186       E     6    7   21       C        1   2   2   3   4   5   6   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     187       E     6    7   21       H        2   2   2   3   3   4   4   6   6   7   9  10  12  13  14  15  16  17  18  21  
 LCS     188       K     6    6   21       H        2   2   2   2   3   3   4   5   6   7   8   8   9  10  14  15  15  15  17  17  
 LCS     189       R     6    6   21       H        2   2   2   2   3   4   5   6   9  10  11  12  13  13  14  15  15  15  18  21  
 LCS     190       I     6    6   21       H        2   2   2   2   3   4   6   8   9  10  11  12  13  13  14  15  16  17  18  21  
 LCS     191       K     6    6   21       H        2   2   2   2   3   4   4   6   8  10  11  12  13  13  14  15  15  16  18  21  
 LCS     192       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     193       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     194       I     6    8   13       H        1   2   2   4   4   5   6   8   9  10  11  12  13  13  14  15  15  15  17  21  
 LCS     195       K     6    8   13       H        1   2   2   4   4   5   6   8   9  10  11  12  13  13  14  15  15  15  17  17  
 LCS     196       R     6    8   13       H        1   2   2   4   4   5   6   8   9  10  11  12  13  13  14  15  15  15  17  17  
 LCS     197       H     6    8   13       H        1   2   2   4   4   5   6   8   9  10  11  12  13  13  14  15  15  15  17  17  
 LCS     198       S     6    8   13       C        1   2   2   4   4   5   6   8   9  10  11  12  13  13  14  15  15  15  17  17  
 LCS     199       E     6    8   13       C        1   1   2   4   4   5   6   8   9  10  11  12  13  13  14  15  15  15  17  17  
 LCS     200       F     4    8   13       C        1   1   2   3   4   5   6   8   9  10  11  12  13  13  14  15  15  15  18  21  
 LCS     201       V     4    8   13       C        1   1   2   3   4   5   6   8   9  10  11  12  13  13  14  15  15  15  18  21  
 LCS     202       A     4    6   13       C        1   1   1   3   4   4   6   8   9  10  11  12  13  13  14  15  15  15  18  21  
 LCS     203       Y     4    4   13       C        1   1   1   1   3   4   5   6   6   6   7   8   8  10  12  13  15  17  18  21  
 LCS     204       P     4    4   13       C        1   1   1   1   1   2   3   3   4   4   5   5   6   7   8  11  13  15  16  18  
 LCS     205       I     3    3   13       E        1   1   1   1   1   2   3   4   6   6   8  11  12  15  16  17  18  18  18  18  
 LCS     206       Q     3    3   13       E        1   1   1   2   2   4   5   6   7   9  10  12  13  15  16  17  18  18  18  18  
 LCS     207       L     3    3   13       E        1   1   1   2   2   4   5   6   7   9  10  12  13  15  16  17  18  18  18  18  
 LCS     208       V     3    3   13       C        1   1   1   1   1   1   2   2   6   9  10  12  13  14  16  17  18  18  18  18  
 LCS     209       V     3    3   13       C        1   1   1   1   1   1   2   2   3   4   5   5   5   6   6   7   7   8   9   9  
 LCS     210       T     3    3   11       C        1   1   1   1   1   2   2   2   2   4   4   4   5   6   6   7   7   8   9   9  
 LCS     211       K     4    6    9       C        1   1   1   2   2   2   2   2   2   4   4   4   5   6   6   7   7   8   9   9  
 LCS     212       E     4    6    9       C        0   1   2   2   2   2   2   2   2   4   4   4   5   5   6   7   7   8   9   9  
 LCS     213       V     4    6    9       C        1   1   2   2   2   2   2   2   2   4   4   4   5   5   6   7   7   8   9   9  
 LCS     214       E     4    6    9       C        1   1   2   2   2   2   2   2   2   3   3   4   5   5   6   6   7   8   9   9  
 LCS     215       K     4    6    9       C        1   1   2   2   2   2   2   2   2   2   3   3   3   4   5   5   6   6   7   7  
 LCS     216       E     4    6    9       C        0   1   2   2   2   2   2   2   2   2   3   3   3   4   5   5   5   6   7   7  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.88 
 
 NUMBER_OF_CA_Tg:  216      NUMBER_OF_CA_Pr:   83      PERCENT_OF_CA:  38.43  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       7       8       9      11      15      16      19      21      23      25      27      30      33      36      37      39      40      40      46  
 GDT PERCENT_OF_CA_Pr    6.02    8.43    9.64   10.84   13.25   18.07   19.28   22.89   25.30   27.71   30.12   32.53   36.14   39.76   43.37   44.58   46.99   48.19   48.19   55.42 
 GDT PERCENT_OF_CA_Tg    2.31    3.24    3.70    4.17    5.09    6.94    7.41    8.80    9.72   10.65   11.57   12.50   13.89   15.28   16.67   17.13   18.06   18.52   18.52   21.30 
 GDT FRAGMENT: Beg-End 187-191 132-138 146-177 145-179 145-177 145-183 145-182 152-202 152-202 173-202 152-202 152-202 132-208 132-207 132-208 131-208 131-208 131-208 131-208 131-203 
 GDT RMS_LOCAL           0.20    0.52    0.85    1.18    1.51    2.35    2.38    3.17    3.33    3.61    3.77    4.02    4.81    5.05    5.30    5.40    5.67    5.77    5.77    7.44 
 GDT RMS_ALL_CA         33.56   20.30   22.28   20.29   21.83   18.97   19.60   19.04   19.06   19.45   19.00   19.34   18.80   18.61   18.52   18.37   18.30   18.36   18.36   17.37 
 
 
 TEST (CA)  RMS =  14.89               (Number of atoms:   83) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.89         83    38.4   216     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1794                            CRMSCA  
     SECONDARY STRUCTURE . .   12.57         41    33.3   123     CRMSCA  
     SURFACE . . . . . . . .   16.56         45    40.2   112     CRMSCA  
     BURIED  . . . . . . . .   12.62         38    36.5   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.97        410    38.4  1067     CRMSMC  
     SECONDARY STRUCTURE . .   12.62        203    33.2   612     CRMSMC  
     SURFACE . . . . . . . .   16.69        222    40.1   553     CRMSMC  
     BURIED  . . . . . . . .   12.63        188    36.6   514     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   15.40         78     9.4   831     CRMSSC  
     RELIABLE SIDE CHAINS  .   15.40         78    10.8   723     CRMSSC  
     SECONDARY STRUCTURE . .   13.04         39     7.7   509     CRMSSC  
     SURFACE . . . . . . . .   17.16         42    10.1   417     CRMSSC  
     BURIED  . . . . . . . .   13.05         36     8.7   414     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   14.97        410    24.2  1695     CRMSALL 
     SECONDARY STRUCTURE . .   12.62        203    20.3  1001     CRMSALL 
     SURFACE . . . . . . . .   16.69        222    25.7   865     CRMSALL 
     BURIED  . . . . . . . .   12.63        188    22.7   830     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.861      1.000       0.500     83    38.4   216     ERRCA  
     SECONDARY STRUCTURE . .   12.266      1.000       0.500     41    33.3   123     ERRCA  
     SURFACE . . . . . . . .   15.132      1.000       0.500     45    40.2   112     ERRCA  
     BURIED  . . . . . . . .   12.355      1.000       0.500     38    36.5   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.910      1.000       0.500    410    38.4  1067     ERRMC  
     SECONDARY STRUCTURE . .   12.304      1.000       0.500    203    33.2   612     ERRMC  
     SURFACE . . . . . . . .   15.234      1.000       0.500    222    40.1   553     ERRMC  
     BURIED  . . . . . . . .   12.346      1.000       0.500    188    36.6   514     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.284      1.000       0.500     78     9.4   831     ERRSC  
     RELIABLE SIDE CHAINS  .   14.284      1.000       0.500     78    10.8   723     ERRSC  
     SECONDARY STRUCTURE . .   12.712      1.000       0.500     39     7.7   509     ERRSC  
     SURFACE . . . . . . . .   15.634      1.000       0.500     42    10.1   417     ERRSC  
     BURIED  . . . . . . . .   12.710      1.000       0.500     36     8.7   414     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.910      1.000       0.500    410    24.2  1695     ERRALL 
     SECONDARY STRUCTURE . .   12.304      1.000       0.500    203    20.3  1001     ERRALL 
     SURFACE . . . . . . . .   15.234      1.000       0.500    222    25.7   865     ERRALL 
     BURIED  . . . . . . . .   12.346      1.000       0.500    188    22.7   830     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         1        13      83     216   DISTCA 
CA  (P)      0.00      0.00      0.00      0.46      6.02             216   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.46      7.73                   DISTCA 
 
ALL (N)         0         0         0         6        67     410    1695   DISTALL 
ALL (P)      0.00      0.00      0.00      0.35      3.95            1695   DISTALL 
ALL (RMS)    0.00      0.00      0.00      4.31      7.91                   DISTALL 
 
 
 
 
END of the results output 
