 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 115 , MODEL 115 , TARGET 216 
#          The number of residues possible to evaluate: 115 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     7     E     E     C             1.00 
 SSP     8     F     C     H             1.00 
 SSP     9     Q     C     H             1.00 
 SSP    10     A     H     H             1.00 
 SSP    11     E     H     H             1.00 
 SSP    12     I     H     H             1.00 
 SSP    13     T     H     H             1.00 
 SSP    14     Q     H     H             1.00 
 SSP    15     L     H     H             1.00 
 SSP    16     M     H     H             1.00 
 SSP    17     S     H     H             1.00 
 SSP    18     L     H     H             1.00 
 SSP    19     I     H     H             1.00 
 SSP    20     I     H     H             1.00 
 SSP    21     N     H     C             1.00 
 SSP    22     T     C     C             1.00 
 SSP    23     V     C     C             1.00 
 SSP    24     Y     C     C             1.00 
 SSP    25     S     C     C             1.00 
 SSP    26     N     C     C             1.00 
 SSP    27     K     C     C             1.00 
 SSP    28     E     C     C             1.00 
 SSP    29     I     H     C             1.00 
 SSP    30     F     H     C             1.00 
 SSP  BREAK 
 SSP    77     I     E     C             1.00 
 SSP    78     R     E     C             1.00 
 SSP    79     D     E     C             1.00 
 SSP    80     S     C     C             1.00 
 SSP    81     G     C     C             1.00 
 SSP    82     I     C     C             1.00 
 SSP    83     G     C     H             1.00 
 SSP    84     M     C     H             1.00 
 SSP    85     T     C     H             1.00 
 SSP    86     K     H     H             1.00 
 SSP    87     A     H     H             1.00 
 SSP    88     E     H     H             1.00 
 SSP    89     L     H     H             1.00 
 SSP    90     I     H     H             1.00 
 SSP    91     N     H     H             1.00 
 SSP    92     N     H     H             1.00 
 SSP    93     L     C     H             1.00 
 SSP    94     G     C     C             1.00 
 SSP    95     T     C     C             1.00 
 SSP    96     I     C     C             1.00 
 SSP    97     A     C     C             1.00 
 SSP    98     K     C     C             1.00 
 SSP    99     S     C     C             1.00 
 SSP   100     G     C     C             1.00 
 SSP   101     T     H     C             1.00 
 SSP   102     K     H     H             1.00 
 SSP   103     A     H     H             1.00 
 SSP   104     F     H     H             1.00 
 SSP   105     M     H     H             1.00 
 SSP   106     E     H     H             1.00 
 SSP   107     A     H     H             1.00 
 SSP   108     L     H     H             1.00 
 SSP   109     S     H     H             1.00 
 SSP   110     A     H     H             1.00 
 SSP   111     G     C     H             1.00 
 SSP   112     A     C     H             1.00 
 SSP   113     D     C     H             1.00 
 SSP   114     V     H     H             1.00 
 SSP   115     S     H     H             1.00 
 SSP   116     M     H     H             1.00 
 SSP   117     I     H     H             1.00 
 SSP   118     G     H     H             1.00 
 SSP   119     Q     H     H             1.00 
 SSP   120     F     H     H             1.00 
 SSP   121     G     C     C             1.00 
 SSP   122     V     C     C             1.00 
 SSP   123     G     H     C             1.00 
 SSP   124     F     H     C             1.00 
 SSP   125     Y     H     C             1.00 
 SSP   126     S     H     H             1.00 
 SSP   127     L     H     H             1.00 
 SSP   128     F     H     H             1.00 
 SSP   129     L     H     H             1.00 
 SSP   130     V     C     H             1.00 
 SSP   131     A     E     H             1.00 
 SSP   132     D     E     H             1.00 
 SSP   133     R     E     H             1.00 
 SSP   134     V     E     H             1.00 
 SSP   135     Q     E     H             1.00 
 SSP   136     V     E     H             1.00 
 SSP   137     I     E     H             1.00 
 SSP   138     S     E     H             1.00 
 SSP   139     K     E     H             1.00 
 SSP   140     S     C     C             1.00 
 SSP   141     N     C     C             1.00 
 SSP   142     D     C     C             1.00 
 SSP   143     D     C     C             1.00 
 SSP   144     E     C     C             1.00 
 SSP   145     Q     E     C             1.00 
 SSP   146     Y     E     C             1.00 
 SSP   147     I     E     C             1.00 
 SSP   148     W     E     C             1.00 
 SSP   149     E     E     C             1.00 
 SSP   150     S     E     C             1.00 
 SSP   151     N     C     C             1.00 
 SSP   152     A     C     C             1.00 
 SSP   153     G     C     C             1.00 
 SSP   154     G     C     C             1.00 
 SSP   155     S     E     C             1.00 
 SSP   156     F     E     C             1.00 
 SSP   157     T     E     C             1.00 
 SSP   158     V     E     C             1.00 
 SSP   159     T     E     C             1.00 
 SSP   160     L     E     H             1.00 
 SSP   161     D     C     H             1.00 
 SSP   162     E     C     H             1.00 
 SSP   163     V     C     H             1.00 
 SSP   164     N     C     H             1.00 
 SSP   165     E     C     H             1.00 
 SSP   166     R     C     H             1.00 
 SSP   167     I     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              58.3      84.4      0.0     64.4     53.2 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        48.8      71.0      0.0     53.7     53.2 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           11              45.5              18.2 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     115    100.0     58.3 
 
 BIN  0.00 - 1.00      1.00     115    100.0     58.3 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         110             110           110            215 
 ALL CONTACTS (< 8.0A)     350             470           350           1099 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       350        242   69.14   51.49   22.02       0     0.00         470      1099  |   1-9999 
 RES CONTACTS       304        236   77.63   85.20   39.93       0     0.00         277       591  |   1-4    
 RES CONTACTS        21          3   14.29   12.00    6.00       0     0.00          25        50  |   5-8    
 RES CONTACTS        25          3   12.00    1.79    0.66       0     0.00         168       458  |   9-9999 
 
 
 
# WARNING! TARGET 1695 atoms, MODEL 1425 atoms, 1380 common with TARGET 
           Number of atoms possible to evaluate: 560 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    79.49           51.8   226    52.6   430     ARMSMC  
     SECONDARY STRUCTURE . .    60.95           65.7   137    55.7   246     ARMSMC  
     SURFACE . . . . . . . .    83.30           52.4   103    46.4   222     ARMSMC  
     BURIED  . . . . . . . .    76.15           51.2   123    59.1   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   184     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   170     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   110     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    94     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    90     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   142     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   112     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    88     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    48     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    34     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    7 - 30   24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    24      7 - 30       4.93     4.93 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   77 - 167  91   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22     95 - 116      4.56    36.18 
  LCS LOCAL_SCORE:             18.60 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    7 - 30   24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13      9 - 21       1.83    10.26 
  LCS LOCAL_SCORE:             39.76 
 
 FRAGMENT  2   77 - 167  91   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    100 - 111      1.63    45.78 
  LONGEST_CONTINUOUS_SEGMENT    12    101 - 112      1.81    47.55 
  LCS LOCAL_SCORE:              8.63 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    7 - 30   24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9      9 - 17       0.58    13.19 
  LCS LOCAL_SCORE:             25.17 
 
 FRAGMENT  2   77 - 167  91   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    101 - 111      0.31    48.65 
  LCS LOCAL_SCORE:              6.48 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       7       E     3    4   24       E        0   1   2   4   4   5   6   8   9  10  11  12  13  16  17  17  17  18  18  18  
 LCS       8       F     3   11   24       C        1   1   3   4   5   6   6   8   9  10  11  12  13  16  17  17  17  18  18  18  
 LCS       9       Q     9   13   24       C        3   4   4   4   5   7   7   8   9  10  12  13  14  16  17  17  17  18  18  18  
 LCS      10       A     9   13   24       H        3   4   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      11       E     9   13   24       H        3   4   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      12       I     9   13   24       H        3   4   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      13       T     9   13   24       H        3   4   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      14       Q     9   13   24       H        3   4   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      15       L     9   13   24       H        3   4   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      16       M     9   13   24       H        3   4   4   4   5   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      17       S     9   13   24       H        2   4   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      18       L     6   13   24       H        2   2   3   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      19       I     6   13   24       H        2   2   3   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      20       I     6   13   24       H        2   2   3   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      21       N     6   13   24       H        2   2   3   4   5   6   6   8   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      22       T     3    5   24       C        1   1   1   1   3   4   5   6   6   7   8  12  13  14  17  17  17  18  18  18  
 LCS      23       V     4    5   24       C        1   1   1   2   3   4   5   6   6   6   8   9   9  10  11  11  11  18  18  18  
 LCS      24       Y     4    5   24       C        1   1   1   1   2   4   5   6   6   6   7   8   8  10  11  11  11  11  12  13  
 LCS      25       S     4    5   24       C        1   1   1   2   3   4   5   6   6   6   8   9   9  10  11  11  11  11  16  18  
 LCS      26       N     4    5   24       C        1   1   1   2   3   4   5   6   6   6   8   9   9  10  11  11  11  15  17  18  
 LCS      27       K     4    5   24       C        1   1   1   2   4   5   6   8   9  10  11  12  13  15  17  17  17  18  18  18  
 LCS      28       E     4    5   24       C        1   1   1   2   2   2   4   6   9  10  11  12  13  16  17  17  17  18  18  18  
 LCS      29       I     4    5   24       H        0   1   1   2   2   2   4   5   6   6  10  12  13  14  17  17  17  18  18  18  
 LCS      30       F     3    5   24       H        0   1   1   2   5   6   6   8   9  10  11  12  14  16  17  17  17  18  18  18  
 LCS      31       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      32       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      33       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      34       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      35       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      36       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      37       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      38       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      39       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      40       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      41       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      42       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      43       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      44       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       I     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      46       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      47       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      48       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      49       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      50       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      51       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      52       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      53       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      54       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      55       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      56       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      57       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      58       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      59       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      60       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      62       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      63       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      64       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      65       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      66       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      67       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       P     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      69       K     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      70       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      71       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      72       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      73       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      74       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      75       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      76       E     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      77       I     5    7   18       E        1   2   2   2   2   3   3   3   3   4   5  12  13  16  17  17  17  18  18  18  
 LCS      78       R     5    7   18       E        1   2   2   2   2   3   3   4   5  11  12  13  14  16  17  17  17  18  18  19  
 LCS      79       D     5    7   18       E        1   2   2   2   2   3   4   4   5   6  12  13  14  16  17  17  17  18  18  19  
 LCS      80       S     5    7   18       C        1   2   2   2   2   3   4   4   5  11  12  13  14  16  17  17  17  18  18  18  
 LCS      81       G     5    7   18       C        1   2   2   3   5   6   6   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      82       I     4    7   18       C        1   2   2   3   5   6   6   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      83       G     4    7   18       C        0   1   2   3   5   6   6   8   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      84       M     4    9   18       C        0   1   2   3   5   6   6   8   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      85       T    10   10   18       C        3   3   4   4   4   5   7   8   8  10  12  13  14  16  17  17  17  18  18  18  
 LCS      86       K    10   10   18       H        3   3   4   4   6   7   7   8   9  10  11  12  14  16  17  17  17  18  18  18  
 LCS      87       A    10   10   18       H        3   3   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      88       E    10   10   18       H        3   3   4   4   5   6   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      89       L    10   10   18       H        3   3   4   4   6   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      90       I    10   10   18       H        3   3   4   4   5   7   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      91       N    10   10   18       H        3   3   4   4   4   5   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      92       N    10   10   18       H        1   3   4   4   4   5   6   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      93       L    10   10   18       C        1   3   4   4   4   5   7   9   9  11  12  13  14  16  17  17  17  18  18  18  
 LCS      94       G    10   10   18       C        1   2   4   4   4   5   5   5   6  11  12  13  14  16  17  17  17  18  18  18  
 LCS      95       T     5    5   22       C        1   2   2   2   3   4   5   6   7   7   8   9   9   9   9  10  11  12  13  14  
 LCS      96       I     5    5   22       C        1   2   2   2   2   2   4   5   6   7   8   9   9   9   9  10  11  12  13  14  
 LCS      97       A     5    5   22       C        1   2   2   2   2   4   5   6   7   7   8   9   9   9   9  10  11  12  13  14  
 LCS      98       K     5    6   22       C        1   2   2   3   5   6   6   6   7   7   8   9   9   9   9  10  10  10  10  11  
 LCS      99       S     5    6   22       C        1   2   2   2   3   5   6   6   7   7   8   9   9   9   9  10  10  12  13  14  
 LCS     100       G     4   12   22       C        1   1   1   2   4   6   6   6   7   7   8   9   9   9   9  10  11  12  13  14  
 LCS     101       T    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9   9  10  10  11  13  14  
 LCS     102       K    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9  11  12  12  13  14  15  
 LCS     103       A    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9  10  12  12  13  14  15  
 LCS     104       F    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9  11  12  12  13  13  14  
 LCS     105       M    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9  11  12  12  13  14  16  
 LCS     106       E    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9  12  14  15  17  18  19  
 LCS     107       A    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9  12  14  15  17  18  19  
 LCS     108       L    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9   9   9  11  13  15  17  18  19  
 LCS     109       S    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9  11  11  12  14  15  17  18  19  
 LCS     110       A    11   12   22       H        5   5   5   5   5   6   6   6   7   7   8   9  11  11  12  14  15  17  18  19  
 LCS     111       G    11   12   22       C        5   5   5   5   5   6   6   6   7   7   8   9  11  11  12  14  15  17  18  19  
 LCS     112       A     3   12   22       C        1   1   2   3   4   5   6   6   7   7   8   9  11  11  12  14  15  17  18  19  
 LCS     113       D     5   10   22       C        1   1   2   4   4   4   4   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     114       V     5   10   22       H        1   1   2   4   4   5   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     115       S     5   10   22       H        1   1   2   4   4   5   5   5   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     116       M     6   10   22       H        2   2   2   4   4   5   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     117       I     6   10   18       H        2   2   2   4   4   5   5   5   6   6   6   9   9  11  12  14  15  17  18  19  
 LCS     118       G     6   10   18       H        2   2   2   4   4   5   5   5   6   6   6   7   8   9  11  12  12  14  16  17  
 LCS     119       Q     6   10   18       H        2   2   3   4   4   5   5   5   6   6   6   7   8   9  10  12  13  15  17  18  
 LCS     120       F     6   10   18       H        2   2   2   4   4   5   5   5   6   6   6   7   8   9  10  11  12  14  16  18  
 LCS     121       G     6   10   18       C        1   1   2   3   4   5   5   5   6   6   6   7   8   9  10  11  11  12  12  13  
 LCS     122       V     4   10   18       C        1   1   2   4   4   5   5   5   6   6   6   6   7   8  10  10  11  12  12  13  
 LCS     123       G     4    6   18       H        1   1   1   1   2   5   5   5   6   6   6   6   7   9  10  11  11  12  12  13  
 LCS     124       F     3    9   18       H        0   1   2   3   4   5   5   5   5   6   6   7   8   9  10  11  11  12  16  17  
 LCS     125       Y     7    9   18       H        1   2   3   3   4   5   5   5   5   6   6   7   8  10  12  13  15  16  18  19  
 LCS     126       S     7    9   18       H        1   2   3   3   4   5   5   5   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     127       L     7    9   18       H        1   2   3   3   4   5   5   5   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     128       F     7    9   18       H        1   2   3   3   4   5   5   5   5   6   6   7   8  10  11  12  13  16  18  19  
 LCS     129       L     7    9   18       H        1   2   3   3   4   5   5   5   5   6   6   7   8  10  11  12  13  13  16  17  
 LCS     130       V     7    9   18       C        1   2   3   3   4   5   5   5   5   6   6   8   8  10  11  12  13  15  18  19  
 LCS     131       A     7    9   18       E        1   2   3   3   4   5   5   5   5   6   6   7   8  10  11  13  14  17  18  19  
 LCS     132       D     4    9   18       E        1   1   2   3   4   5   5   5   5   6   6   7   8   9  10  11  11  12  12  13  
 LCS     133       R     4    4   18       E        1   1   1   1   1   2   3   3   4   5   6   8   8   9  10  11  13  14  16  17  
 LCS     134       V     4    4   15       E        0   1   1   1   1   2   3   3   4   6   6   7   9  11  12  14  15  17  18  19  
 LCS     135       Q     3    3   15       E        1   1   1   2   2   2   3   3   4   5   6   7   9  11  12  14  15  17  18  19  
 LCS     136       V     3    3   15       E        1   1   1   1   2   3   4   5   5   6   7   8  10  11  12  14  15  17  18  19  
 LCS     137       I     3    3   15       E        1   1   1   2   2   3   3   5   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     138       S     3    3   15       E        1   1   1   1   2   3   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     139       K     3    3   15       E        0   1   1   1   2   3   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     140       S     4    6   15       C        1   1   1   2   3   4   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     141       N     4    6   15       C        1   1   1   2   2   3   3   5   5   6   6   9  11  11  12  12  14  15  17  18  
 LCS     142       D     4    6   15       C        1   1   1   2   2   3   3   5   5   6   6   7   8  11  12  12  14  15  16  18  
 LCS     143       D     4    6   15       C        1   1   1   2   2   3   3   5   5   5   6   9  11  11  12  13  14  17  17  19  
 LCS     144       E     3    6   15       C        1   1   1   2   2   3   3   5   5   6   7   8   9  11  12  14  15  17  18  19  
 LCS     145       Q     3    6   15       E        1   1   1   2   2   2   3   5   5   5   7   7   9  11  12  14  15  17  18  19  
 LCS     146       Y     5    7   11       E        1   1   2   2   3   3   3   3   4   4   6   6   8  10  12  14  15  17  18  19  
 LCS     147       I     5    7    8       E        1   1   2   2   3   3   3   4   4   6   6   8  10  11  12  14  15  17  18  19  
 LCS     148       W     5    7    8       E        1   1   2   2   3   3   3   4   4   4   5   6   8  10  11  13  14  17  18  19  
 LCS     149       E     5    7    8       E        1   1   2   2   3   3   3   3   4   5   5   5   6   6   7   7   9  12  14  14  
 LCS     150       S     5    7    8       E        1   1   2   2   3   3   3   3   3   4   4   5   6   6   7   7   8   9   9  10  
 LCS     151       N     5    7    8       C        1   1   2   2   3   3   3   3   3   3   3   4   5   6   7   7   8   8   9  10  
 LCS     152       A     3    7    8       C        1   1   1   2   3   3   3   3   3   3   3   4   5   5   6   6   7   8   8   9  
 LCS     153       G     3    5    9       C        0   1   1   1   1   2   3   5   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     154       G     3    5    9       C        1   1   1   1   1   2   3   3   4   5   7   8  10  11  12  14  15  17  18  19  
 LCS     155       S     3    5   13       E        1   1   1   1   2   3   4   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     156       F     4    6   13       E        1   1   2   3   4   4   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     157       T     4    6   13       E        1   1   2   3   4   4   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     158       V     4    6   13       E        1   1   2   2   4   4   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     159       T     4    6   13       E        1   1   2   3   4   4   5   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     160       L     4    6   13       E        1   1   2   2   2   3   3   5   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     161       D     4    6   13       C        1   1   2   3   4   4   4   6   6   7   8   9  11  11  12  14  15  17  18  19  
 LCS     162       E     4    5   13       C        1   1   1   2   2   3   3   4   5   6   6   6   7  10  11  12  14  15  16  18  
 LCS     163       V     4    5   13       C        1   1   1   2   2   3   3   4   5   6   6   6   7   8   8   8  10  13  16  18  
 LCS     164       N     4    5   13       C        1   1   1   2   2   3   3   4   5   6   6   6   9  11  12  14  15  17  17  18  
 LCS     165       E     3    5   13       C        1   1   1   1   2   2   3   3   4   6   6   6   7  10  10  12  14  15  16  18  
 LCS     166       R     3    4   13       C        1   1   1   1   1   1   5   6   6   6   6   7   7   7   8   9   9   9  12  12  
 LCS     167       I     3    4   13       C        1   1   1   1   3   3   5   6   6   6   6   7   7   7   8   9   9  11  12  12  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.46 
 
 NUMBER_OF_CA_Tg:  216      NUMBER_OF_CA_Pr:  115      PERCENT_OF_CA:  53.24  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      11      11      11      11      13      16      17      20      21      25      28      29      31      35      38      38      38      39      40      42  
 GDT PERCENT_OF_CA_Pr    9.57    9.57    9.57    9.57   11.30   13.91   14.78   17.39   18.26   21.74   24.35   25.22   26.96   30.43   33.04   33.04   33.04   33.91   34.78   36.52 
 GDT PERCENT_OF_CA_Tg    5.09    5.09    5.09    5.09    6.02    7.41    7.87    9.26    9.72   11.57   12.96   13.43   14.35   16.20   17.59   17.59   17.59   18.06   18.52   19.44 
 GDT FRAGMENT: Beg-End 101-111 101-111 101-111 101-111  10-89    9-90    9-90   10-93    7-88   10-94    9-94    9-94    9-94    7-94    7-94    7-94    7-94    7-94   78-161  78-161 
 GDT RMS_LOCAL           0.31    0.31    0.31    0.31    1.77    2.00    2.18    3.02    2.99    3.61    3.86    3.98    4.25    4.78    5.14    5.14    5.14    5.36    6.78    6.98 
 GDT RMS_ALL_CA         47.20   47.20   47.20   47.20   24.93   24.75   24.69   24.95   27.10   24.73   25.08   25.10   25.38   25.92   26.67   26.67   26.67   26.88   20.04   20.04 
 
 
 TEST (CA)  RMS =  17.93               (Number of atoms:  115) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   17.93        115    53.2   216     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1559                            CRMSCA  
     SECONDARY STRUCTURE . .   14.52         70    56.9   123     CRMSCA  
     SURFACE . . . . . . . .   19.50         52    46.4   112     CRMSCA  
     BURIED  . . . . . . . .   16.52         63    60.6   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   18.00        560    52.5  1067     CRMSMC  
     SECONDARY STRUCTURE . .   14.61        345    56.4   612     CRMSMC  
     SURFACE . . . . . . . .   19.59        253    45.8   553     CRMSMC  
     BURIED  . . . . . . . .   16.58        307    59.7   514     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   18.62        100    12.0   831     CRMSSC  
     RELIABLE SIDE CHAINS  .   18.62        100    13.8   723     CRMSSC  
     SECONDARY STRUCTURE . .   14.79         65    12.8   509     CRMSSC  
     SURFACE . . . . . . . .   20.56         45    10.8   417     CRMSSC  
     BURIED  . . . . . . . .   16.87         55    13.3   414     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   18.00        560    33.0  1695     CRMSALL 
     SECONDARY STRUCTURE . .   14.61        345    34.5  1001     CRMSALL 
     SURFACE . . . . . . . .   19.59        253    29.2   865     CRMSALL 
     BURIED  . . . . . . . .   16.58        307    37.0   830     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.924      1.000       0.500    115    53.2   216     ERRCA  
     SECONDARY STRUCTURE . .   13.270      1.000       0.500     70    56.9   123     ERRCA  
     SURFACE . . . . . . . .   17.120      1.000       0.500     52    46.4   112     ERRCA  
     BURIED  . . . . . . . .   14.936      1.000       0.500     63    60.6   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.981      1.000       0.500    560    52.5  1067     ERRMC  
     SECONDARY STRUCTURE . .   13.328      1.000       0.500    345    56.4   612     ERRMC  
     SURFACE . . . . . . . .   17.183      1.000       0.500    253    45.8   553     ERRMC  
     BURIED  . . . . . . . .   14.991      1.000       0.500    307    59.7   514     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.403      1.000       0.500    100    12.0   831     ERRSC  
     RELIABLE SIDE CHAINS  .   16.403      1.000       0.500    100    13.8   723     ERRSC  
     SECONDARY STRUCTURE . .   13.490      1.000       0.500     65    12.8   509     ERRSC  
     SURFACE . . . . . . . .   17.869      1.000       0.500     45    10.8   417     ERRSC  
     BURIED  . . . . . . . .   15.203      1.000       0.500     55    13.3   414     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.981      1.000       0.500    560    33.0  1695     ERRALL 
     SECONDARY STRUCTURE . .   13.328      1.000       0.500    345    34.5  1001     ERRALL 
     SURFACE . . . . . . . .   17.183      1.000       0.500    253    29.2   865     ERRALL 
     BURIED  . . . . . . . .   14.991      1.000       0.500    307    37.0   830     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         5        29     115     216   DISTCA 
CA  (P)      0.00      0.00      0.46      2.31     13.43             216   DISTCA 
CA  (RMS)    0.00      0.00      2.21      3.73      7.36                   DISTCA 
 
ALL (N)         0         1         6        26       143     560    1695   DISTALL 
ALL (P)      0.00      0.06      0.35      1.53      8.44            1695   DISTALL 
ALL (RMS)    0.00      1.73      2.50      4.04      7.38                   DISTALL 
 
 
 
 
END of the results output 
