 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 109 , MODEL 109 , TARGET 456 
#          The number of residues possible to evaluate: 109 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   158     F     H     C             1.00 
 SSP   159     H     H     H             1.00 
 SSP   160     K     H     H             1.00 
 SSP   161     K     H     H             1.00 
 SSP   162     I     C     H             1.00 
 SSP   163     E     H     H             1.00 
 SSP   164     S     H     H             1.00 
 SSP   165     A     H     H             1.00 
 SSP   166     L     H     H             1.00 
 SSP   167     R     H     C             1.00 
 SSP   168     N     H     C             1.00 
 SSP   169     K     H     C             1.00 
 SSP  BREAK 
 SSP   171     N     H     C             1.00 
 SSP   172     S     H     C             1.00 
 SSP   173     Q     H     C             1.00 
 SSP   174     V     H     H             1.00 
 SSP   175     C     H     H             1.00 
 SSP   176     E     H     H             1.00 
 SSP  BREAK 
 SSP   178     V     H     H             1.00 
 SSP   179     T     H     H             1.00 
 SSP   180     N     H     H             1.00 
 SSP   181     S     H     H             1.00 
 SSP   182     V     H     H             1.00 
 SSP   183     S     H     H             1.00 
 SSP   184     S     H     H             1.00 
 SSP   185     E     H     H             1.00 
 SSP   186     L     H     H             1.00 
 SSP   187     Q     H     C             1.00 
 SSP   188     P     H     C             1.00 
 SSP   189     Y     H     C             1.00 
 SSP   190     F     C     C             1.00 
 SSP   191     Q     C     C             1.00 
 SSP   192     T     C     C             1.00 
 SSP   193     L     C     C             1.00 
 SSP   194     P     C     C             1.00 
 SSP   195     V     C     C             1.00 
 SSP   196     M     E     E             1.00 
 SSP   197     T     E     E             1.00 
 SSP   198     K     E     C             1.00 
 SSP   199     I     C     C             1.00 
 SSP   200     D     C     C             1.00 
 SSP   201     S     C     C             1.00 
 SSP   202     V     C     C             1.00 
 SSP   203     A     E     C             1.00 
 SSP   204     G     E     C             1.00 
 SSP   205     I     E     C             1.00 
 SSP   206     N     E     C             1.00 
 SSP   207     Y     C     C             1.00 
 SSP   208     G     C     C             1.00 
 SSP   209     L     E     C             1.00 
 SSP   210     V     C     C             1.00 
 SSP   211     A     C     C             1.00 
 SSP   212     P     C     C             1.00 
 SSP   213     P     C     C             1.00 
 SSP   214     A     E     H             1.00 
 SSP   215     T     E     H             1.00 
 SSP   216     T     C     H             1.00 
 SSP   217     A     C     H             1.00 
 SSP   218     E     C     C             1.00 
 SSP   219     T     E     C             1.00 
 SSP   220     L     E     H             1.00 
 SSP   221     D     E     H             1.00 
 SSP   222     V     E     H             1.00 
 SSP   223     Q     E     H             1.00 
 SSP   224     M     E     H             1.00 
 SSP   225     K     C     H             1.00 
 SSP   226     G     C     C             1.00 
 SSP   227     E     E     C             1.00 
 SSP   228     F     E     C             1.00 
 SSP   229     Y     E     E             1.00 
 SSP   230     S     E     E             1.00 
 SSP   231     E     C     C             1.00 
 SSP   232     N     C     C             1.00 
 SSP   233     H     C     C             1.00 
 SSP   234     H     C     C             1.00 
 SSP   235     N     C     C             1.00 
 SSP   236     P     C     C             1.00 
 SSP   237     P     C     C             1.00 
 SSP   238     P     C     C             1.00 
 SSP   239     F     C     C             1.00 
 SSP   240     A     C     C             1.00 
 SSP   241     P     C     C             1.00 
 SSP   242     P     C     C             1.00 
 SSP   243     V     C     C             1.00 
 SSP   244     M     C     C             1.00 
 SSP   245     E     C     C             1.00 
 SSP  BREAK 
 SSP   247     P     C     C             1.00 
 SSP   248     A     C     C             1.00 
 SSP   249     A     C     C             1.00 
 SSP   250     H     C     C             1.00 
 SSP   251     D     C     C             1.00 
 SSP   252     R     C     C             1.00 
 SSP   253     M     C     C             1.00 
 SSP   254     V     E     C             1.00 
 SSP   255     Y     E     C             1.00 
 SSP   256     L     E     C             1.00 
 SSP   257     G     E     C             1.00 
 SSP   258     L     E     C             1.00 
 SSP   259     S     E     C             1.00 
 SSP   260     D     H     C             1.00 
 SSP   261     Y     H     H             1.00 
 SSP   262     F     H     H             1.00 
 SSP   263     F     H     H             1.00 
 SSP   264     N     H     H             1.00 
 SSP   265     T     H     H             1.00 
 SSP   266     A     H     H             1.00 
 SSP   267     G     H     H             1.00 
 SSP   268     L     H     H             1.00 
 SSP   269     V     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              65.1      69.2     15.4     90.9     23.9 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        64.7      83.8     23.1     72.4     23.9 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            9              55.6              22.2 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     109    100.0     65.1 
 
 BIN  0.00 - 1.00      1.00     109    100.0     65.1 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         105             105           105            456 
 ALL CONTACTS (< 8.0A)     449             351           449           2232 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       449        222   49.44   63.25    9.95       0     0.00         351      2232  |   1-9999 
 RES CONTACTS       277        221   79.78   85.33   19.73       0     0.00         259      1120  |   1-4    
 RES CONTACTS        31          1    3.23    5.56    0.91       0     0.00          18       110  |   5-8    
 RES CONTACTS       141          0    0.00    0.00    0.00       0     0.00          74      1002  |   9-9999 
 
 
 
# WARNING! TARGET 3510 atoms, MODEL 3255 atoms, 3224 common with TARGET 
           Number of atoms possible to evaluate: 536 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    75.62           47.6   210    23.1   910     ARMSMC  
     SECONDARY STRUCTURE . .    67.48           58.5   118    19.3   612     ARMSMC  
     SURFACE . . . . . . . .    74.50           44.5   110    21.4   514     ARMSMC  
     BURIED  . . . . . . . .    76.83           51.0   100    25.3   396     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   388     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   351     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   268     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   220     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   168     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   286     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   208     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   195     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   160     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   126     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    94     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    73     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    72     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    41     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    41     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    29     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  158 - 169  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    158 - 169      2.14     2.14 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  171 - 176  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    171 - 176      2.67     2.67 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  178 - 245  68   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    178 - 195      4.80    27.75 
  LONGEST_CONTINUOUS_SEGMENT    18    185 - 202      4.79    23.09 
  LONGEST_CONTINUOUS_SEGMENT    18    186 - 203      4.60    23.36 
  LONGEST_CONTINUOUS_SEGMENT    18    187 - 204      4.75    23.72 
  LCS LOCAL_SCORE:             22.95 
 
 FRAGMENT  4  247 - 269  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    252 - 269      4.18     9.82 
  LCS LOCAL_SCORE:             74.48 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  158 - 169  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    158 - 168      1.75     2.30 
  LONGEST_CONTINUOUS_SEGMENT    11    159 - 169      1.99     2.22 
  LCS LOCAL_SCORE:             91.67 
 
 FRAGMENT  2  171 - 176  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    172 - 176      1.61     3.45 
  LCS LOCAL_SCORE:             77.78 
 
 FRAGMENT  3  178 - 245  68   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    178 - 190      1.58    36.98 
  LCS LOCAL_SCORE:             11.59 
 
 FRAGMENT  4  247 - 269  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    259 - 269      1.85    10.95 
  LCS LOCAL_SCORE:             37.81 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  158 - 169  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    160 - 166      0.84     3.05 
  LONGEST_CONTINUOUS_SEGMENT     7    161 - 167      0.92     2.69 
  LCS LOCAL_SCORE:             51.39 
 
 FRAGMENT  2  171 - 176  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    173 - 176      0.44     5.09 
  LCS LOCAL_SCORE:             61.11 
 
 FRAGMENT  3  178 - 245  68   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    178 - 185      0.48    33.61 
  LCS LOCAL_SCORE:              6.62 
 
 FRAGMENT  4  247 - 269  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    260 - 269      0.47    11.01 
  LCS LOCAL_SCORE:             28.54 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     158       F     5   11   12       H        0   0   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3  
 LCS     159       H     5   11   12       H        0   1   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3  
 LCS     160       K     7   11   12       H        0   0   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3  
 LCS     161       K     7   11   12       H        0   0   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3  
 LCS     162       I     7   11   12       C        1   1   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3   3  
 LCS     163       E     7   11   12       H        1   1   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3   3  
 LCS     164       S     7   11   12       H        1   1   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3   3  
 LCS     165       A     7   11   12       H        1   1   1   1   2   2   2   2   2   2   2   2   2   2   2   2   2   2   3   3  
 LCS     166       L     7   11   12       H        1   1   1   1   2   2   2   2   2   2   2   2   2   2   2   3   3   3   4   5  
 LCS     167       R     7   11   12       H        0   1   1   1   2   2   2   2   2   2   2   2   2   4   4   5   5   5   5   5  
 LCS     168       N     4   11   12       H        0   0   1   1   1   2   2   2   2   2   2   2   2   2   3   5   5   5   5   5  
 LCS     169       K     4   11   12       H        0   0   1   1   1   2   3   3   3   4   4   4   4   4   4   5   5   5   5   5  
 LCS     170       M     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     171       N     3    3    6       H        0   0   0   0   0   0   1   1   2   2   3   4   4   4   4   5   5   5   5   5  
 LCS     172       S     3    5    6       H        0   0   0   0   1   1   3   3   3   4   4   4   4   4   4   5   5   5   5   5  
 LCS     173       Q     4    5    6       H        0   1   2   2   3   3   3   3   3   4   4   4   4   4   4   5   5   5   5   5  
 LCS     174       V     4    5    6       H        0   0   0   1   3   3   3   3   3   4   4   4   4   4   4   5   5   5   5   5  
 LCS     175       C     4    5    6       H        0   0   0   1   2   3   3   3   3   4   4   4   4   4   4   5   5   5   5   5  
 LCS     176       E     4    5    6       H        0   0   1   2   3   3   3   3   3   4   4   4   4   4   4   5   5   5   5   5  
 LCS     177       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     178       V     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   4   5   5   5   5   5  
 LCS     179       T     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   4   5   5   5   6   6  
 LCS     180       N     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   5   5   5   6   6   7  
 LCS     181       S     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   5   5   5   6   6   7  
 LCS     182       V     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   5   5   5   6   6   7  
 LCS     183       S     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   5   5   6   7   7   8  
 LCS     184       S     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   5   5   6   7   7   8  
 LCS     185       E     8   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   4   4   5   5   6   7   7   8  
 LCS     186       L     7   13   18       H        1   1   1   2   3   3   3   3   3   4   4   4   4   5   6   6   7   7   8   8  
 LCS     187       Q     7   13   18       H        1   1   1   2   3   3   3   3   3   4   4   4   4   5   5   6   7   7   8   8  
 LCS     188       P     7   13   18       H        1   1   1   2   3   3   3   3   3   4   4   4   4   5   6   6   7   7   8   8  
 LCS     189       Y     7   13   18       H        1   1   2   2   3   3   3   3   3   4   4   4   5   5   6   6   7   7   8   8  
 LCS     190       F     7   13   18       C        0   0   1   1   3   3   3   3   3   4   4   4   5   5   6   6   7   7   8   8  
 LCS     191       Q     4    9   18       C        0   0   1   1   2   2   3   3   3   4   4   4   5   5   6   6   7   7   8   8  
 LCS     192       T     4    9   18       C        0   0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     193       L     4    9   18       C        0   0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     194       P     4    9   18       C        0   0   0   0   1   1   1   2   3   3   3   4   5   5   5   6   6   7   8   8  
 LCS     195       V     5    9   18       C        0   0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     196       M     5    9   18       E        0   0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     197       T     5    9   18       E        0   0   1   1   1   2   2   2   3   3   3   5   5   5   6   6   7   7   8   8  
 LCS     198       K     5    9   18       E        0   1   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7   8   8  
 LCS     199       I     5    9   18       C        0   0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     200       D     4    8   18       C        0   0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     201       S     4    8   18       C        0   0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     202       V     3    8   18       C        0   0   0   1   1   2   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     203       A     4    8   18       E        0   1   1   1   1   1   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     204       G     4    8   18       E        0   1   1   1   1   1   2   2   2   2   2   2   4   5   6   6   7   7   8   8  
 LCS     205       I     4    8   16       E        0   1   1   1   1   1   2   2   2   2   2   2   3   3   3   4   4   5   6   7  
 LCS     206       N     4    8   16       E        0   1   1   1   1   1   2   2   2   2   2   2   3   4   5   5   5   6   6   6  
 LCS     207       Y     4    8   16       C        0   0   0   1   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   6  
 LCS     208       G     3    8   16       C        0   1   1   2   2   3   3   3   4   4   4   5   5   5   5   5   5   6   6   6  
 LCS     209       L     3    8   16       E        0   1   1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   6  
 LCS     210       V     3    8   16       C        0   0   0   2   2   2   3   3   4   4   4   5   5   5   5   5   5   6   6   6  
 LCS     211       A     4    6   16       C        0   1   2   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   6  
 LCS     212       P     4    6   16       C        0   0   0   1   1   1   1   1   2   2   2   2   5   5   5   5   5   6   6   6  
 LCS     213       P     4    6   16       C        0   0   0   1   1   1   2   2   2   2   2   2   3   3   3   3   4   5   5   6  
 LCS     214       A     4    6   14       E        0   0   0   1   1   1   1   1   2   2   2   2   3   3   3   4   4   6   6   7  
 LCS     215       T     4    6   14       E        0   0   0   1   1   1   1   1   2   2   2   3   3   4   5   5   5   6   6   7  
 LCS     216       T     3    4   14       C        0   0   0   0   0   1   1   2   2   2   3   3   4   4   5   5   5   6   6   7  
 LCS     217       A     3    4   13       C        0   0   0   0   0   1   1   1   2   2   3   3   4   4   5   5   5   6   6   7  
 LCS     218       E     3    4   13       C        0   0   0   0   0   1   1   1   2   2   2   3   4   4   5   5   5   6   6   6  
 LCS     219       T     3    4   13       E        0   0   0   0   0   1   1   2   2   2   3   3   4   4   5   5   5   6   6   7  
 LCS     220       L     3    4   13       E        0   0   0   0   0   1   1   2   2   2   3   3   4   4   5   5   5   6   6   7  
 LCS     221       D     3    3   13       E        0   0   0   0   0   1   1   2   2   2   3   3   4   4   5   5   5   6   6   7  
 LCS     222       V     3    3   13       E        0   0   0   0   0   1   1   2   2   2   3   3   4   4   5   6   7   7   8   8  
 LCS     223       Q     3    3   13       E        0   0   0   0   0   0   1   1   1   1   2   3   4   5   6   6   7   7   8   8  
 LCS     224       M     3    4   13       E        0   0   0   0   1   1   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     225       K     3    5   13       C        0   0   0   0   1   1   1   1   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     226       G     3    5   13       C        0   0   0   0   1   1   1   1   1   3   3   4   5   5   6   6   7   7   8   8  
 LCS     227       E     3    6   13       E        0   0   0   0   1   1   1   1   1   1   2   2   2   3   4   4   5   5   5   5  
 LCS     228       F     4    6   12       E        0   0   0   0   1   1   1   1   1   1   2   2   2   3   3   4   5   5   5   5  
 LCS     229       Y     4    6   12       E        0   0   0   0   1   1   1   1   1   1   2   2   2   3   4   5   5   5   5   6  
 LCS     230       S     4    6   13       E        0   0   0   0   1   1   1   1   2   3   3   4   5   5   5   5   5   6   6   6  
 LCS     231       E     4    6   14       C        0   0   0   0   1   1   1   1   2   3   3   3   3   3   4   5   6   7   8   8  
 LCS     232       N     4    6   14       C        0   0   0   0   1   1   1   1   2   3   3   3   3   3   3   5   6   7   8   8  
 LCS     233       H     4    5   14       C        0   0   0   0   1   1   1   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     234       H     4    5   14       C        0   0   0   1   1   1   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     235       N     4    5   14       C        0   0   0   0   0   1   1   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     236       P     4    5   14       C        0   0   0   0   0   1   1   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     237       P     4    8   14       C        0   0   1   1   1   1   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     238       P     3    8   14       C        0   0   1   1   1   1   2   2   3   3   3   4   5   5   6   6   7   7   8   8  
 LCS     239       F     4    8   14       C        0   0   0   1   1   1   1   2   2   3   3   4   4   5   5   5   6   7   7   8  
 LCS     240       A     4    8   14       C        0   0   0   0   1   1   1   2   2   2   3   4   4   5   5   5   6   7   7   8  
 LCS     241       P     4    8   14       C        0   0   0   0   1   1   1   2   2   2   2   2   4   5   5   5   6   7   7   8  
 LCS     242       P     4    8   14       C        0   0   1   1   1   1   1   2   2   2   3   4   4   5   5   5   6   7   7   8  
 LCS     243       V     4    8   14       C        0   0   1   1   1   1   1   2   2   2   3   4   4   5   5   5   6   7   7   8  
 LCS     244       M     4    8   14       C        0   0   1   1   1   1   1   2   2   2   2   2   4   5   5   5   6   7   7   8  
 LCS     245       E     3    5   13       C        0   0   0   0   0   1   1   2   2   2   3   4   4   5   5   5   6   7   7   8  
 LCS     246       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     247       P     3    3   10       C        0   0   0   0   1   1   1   2   2   2   3   4   4   5   5   5   6   7   7   8  
 LCS     248       A     4    7   15       C        0   0   0   1   1   1   1   2   2   2   3   4   4   5   5   5   6   6   7   8  
 LCS     249       A     4    7   15       C        0   0   0   1   1   1   1   2   2   2   3   3   4   5   5   5   6   6   7   7  
 LCS     250       H     4    7   15       C        0   0   0   1   1   1   1   2   2   2   3   3   4   4   5   5   6   6   7   7  
 LCS     251       D     4    7   15       C        0   0   0   1   1   1   1   2   2   2   3   3   4   4   5   5   5   6   6   7  
 LCS     252       R     4    7   18       C        0   0   0   1   1   1   1   2   2   3   3   3   4   5   5   5   5   6   6   6  
 LCS     253       M     4    7   18       C        0   0   0   1   1   1   1   2   2   2   3   3   3   3   5   5   5   6   6   6  
 LCS     254       V     4    7   18       E        0   0   0   1   1   1   1   2   4   4   4   5   5   5   5   5   5   6   6   6  
 LCS     255       Y     4    6   18       E        0   0   0   1   1   1   2   3   4   4   4   5   5   5   5   5   5   6   6   6  
 LCS     256       L     4    7   18       E        0   0   0   1   1   2   2   3   3   3   4   5   5   5   5   5   5   6   6   6  
 LCS     257       G     4    7   18       E        0   0   0   1   1   2   2   3   4   4   4   5   5   5   5   5   5   6   6   7  
 LCS     258       L     4    7   18       E        0   0   0   1   1   2   2   3   3   4   4   5   5   5   5   5   5   6   6   7  
 LCS     259       S     4   11   18       E        0   0   0   1   1   2   3   3   4   4   4   5   5   5   5   5   6   6   7   7  
 LCS     260       D    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   5   7   7   8   8  
 LCS     261       Y    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7   8   8  
 LCS     262       F    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   6   6   7   7   8   8  
 LCS     263       F    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   5   7   7   8   8  
 LCS     264       N    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   6   7   7   8   8  
 LCS     265       T    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   6   7   7   8   8  
 LCS     266       A    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   5   6   7   7   8  
 LCS     267       G    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   5   6   7   7   8  
 LCS     268       L    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   5   6   7   7   8  
 LCS     269       V    10   11   18       H        1   2   2   2   3   3   3   3   4   4   4   5   5   5   5   5   6   7   7   8  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.27 
 
 NUMBER_OF_CA_Tg:  456      NUMBER_OF_CA_Pr:  109      PERCENT_OF_CA:  23.90  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       7      10      11      13      14      16      17      17      20      21      22      23      24      26      28      30      32      35      37      38  
 GDT PERCENT_OF_CA_Pr    6.42    9.17   10.09   11.93   12.84   14.68   15.60   15.60   18.35   19.27   20.18   21.10   22.02   23.85   25.69   27.52   29.36   32.11   33.94   34.86 
 GDT PERCENT_OF_CA_Tg    1.54    2.19    2.41    2.85    3.07    3.51    3.73    3.73    4.39    4.61    4.82    5.04    5.26    5.70    6.14    6.58    7.02    7.68    8.11    8.33 
 GDT FRAGMENT: Beg-End 260-269 260-269 198-269 173-189 173-189 173-190 173-190 173-190 198-269 198-269 198-269 197-269 197-269 189-262 188-262 186-262 186-262 186-265 186-265 186-265 
 GDT RMS_LOCAL           0.19    0.47    0.77    1.39    1.51    1.79    1.92    1.92    3.12    3.27    3.42    3.66    3.91    5.06    5.49    5.74    6.03    6.38    6.61    6.73 
 GDT RMS_ALL_CA         24.14   24.18   25.15   36.17   36.38   36.37   36.49   36.49   28.07   28.16   28.30   27.87   28.10   30.05   29.04   28.35   27.86   28.56   28.68   28.36 
 
 
 TEST (CA)  RMS =  18.45               (Number of atoms:  109) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   18.45        109    23.9   456     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1692                            CRMSCA  
     SECONDARY STRUCTURE . .   19.61         62    20.3   306     CRMSCA  
     SURFACE . . . . . . . .   18.53         57    22.1   258     CRMSCA  
     BURIED  . . . . . . . .   18.35         52    26.3   198     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   18.48        536    23.8  2254     CRMSMC  
     SECONDARY STRUCTURE . .   19.58        306    20.3  1511     CRMSMC  
     SURFACE . . . . . . . .   18.60        284    22.2  1282     CRMSMC  
     BURIED  . . . . . . . .   18.34        252    25.9   972     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   19.00        100     5.9  1686     CRMSSC  
     RELIABLE SIDE CHAINS  .   19.00        100     7.2  1392     CRMSSC  
     SECONDARY STRUCTURE . .   20.14         58     4.9  1184     CRMSSC  
     SURFACE . . . . . . . .   19.12         56     6.0   939     CRMSSC  
     BURIED  . . . . . . . .   18.84         44     5.9   747     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   18.48        536    15.3  3510     CRMSALL 
     SECONDARY STRUCTURE . .   19.58        306    12.7  2408     CRMSALL 
     SURFACE . . . . . . . .   18.60        284    14.4  1971     CRMSALL 
     BURIED  . . . . . . . .   18.34        252    16.4  1539     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.642      1.000       0.500    109    23.9   456     ERRCA  
     SECONDARY STRUCTURE . .   17.305      1.000       0.500     62    20.3   306     ERRCA  
     SURFACE . . . . . . . .   16.467      1.000       0.500     57    22.1   258     ERRCA  
     BURIED  . . . . . . . .   16.833      1.000       0.500     52    26.3   198     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.658      1.000       0.500    536    23.8  2254     ERRMC  
     SECONDARY STRUCTURE . .   17.287      1.000       0.500    306    20.3  1511     ERRMC  
     SURFACE . . . . . . . .   16.536      1.000       0.500    284    22.2  1282     ERRMC  
     BURIED  . . . . . . . .   16.796      1.000       0.500    252    25.9   972     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.952      1.000       0.500    100     5.9  1686     ERRSC  
     RELIABLE SIDE CHAINS  .   16.952      1.000       0.500    100     7.2  1392     ERRSC  
     SECONDARY STRUCTURE . .   17.591      1.000       0.500     58     4.9  1184     ERRSC  
     SURFACE . . . . . . . .   16.873      1.000       0.500     56     6.0   939     ERRSC  
     BURIED  . . . . . . . .   17.052      1.000       0.500     44     5.9   747     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.658      1.000       0.500    536    15.3  3510     ERRALL 
     SECONDARY STRUCTURE . .   17.287      1.000       0.500    306    12.7  2408     ERRALL 
     SURFACE . . . . . . . .   16.536      1.000       0.500    284    14.4  1971     ERRALL 
     BURIED  . . . . . . . .   16.796      1.000       0.500    252    16.4  1539     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         3        17     109     456   DISTCA 
CA  (P)      0.00      0.00      0.00      0.66      3.73             456   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.38      7.76                   DISTCA 
 
ALL (N)         0         0         0        15        84     536    3510   DISTALL 
ALL (P)      0.00      0.00      0.00      0.43      2.39            3510   DISTALL 
ALL (RMS)    0.00      0.00      0.00      4.34      7.64                   DISTALL 
 
 
 
 
END of the results output 
