 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 87 , MODEL 87 , TARGET 456 
#          The number of residues possible to evaluate: 87 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     2     N     C     C             1.00 
 SSP     3     P     C     C             1.00 
 SSP     4     G     C     C             1.00 
 SSP     5     V     E     C             1.00 
 SSP     6     V     E     C             1.00 
 SSP     7     V     E     C             1.00 
 SSP     8     R     E     C             1.00 
 SSP     9     I     E     C             1.00 
 SSP    10     S     E     H             1.00 
 SSP    11     Q     H     H             1.00 
 SSP    12     K     H     H             1.00 
 SSP    13     G     H     H             1.00 
 SSP    14     L     H     H             1.00 
 SSP    15     D     H     H             1.00 
 SSP    16     Y     H     C             1.00 
 SSP    17     A     H     C             1.00 
 SSP    18     S     H     C             1.00 
 SSP    19     Q     H     H             1.00 
 SSP    20     Q     H     H             1.00 
 SSP    21     G     H     H             1.00 
 SSP    22     T     H     H             1.00 
 SSP    23     A     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     L     H     H             1.00 
 SSP    26     Q     H     H             1.00 
 SSP    27     K     H     H             1.00 
 SSP    28     E     H     H             1.00 
 SSP    29     L     H     H             1.00 
 SSP    30     K     C     H             1.00 
 SSP    31     R     C     H             1.00 
 SSP    32     I     C     C             1.00 
 SSP    33     K     C     C             1.00 
 SSP    34     I     C     C             1.00 
 SSP    35     P     C     C             1.00 
 SSP    36     D     C     C             1.00 
 SSP  BREAK 
 SSP    38     S     E     C             1.00 
 SSP    39     D     E     C             1.00 
 SSP    40     S     E     C             1.00 
 SSP    41     F     E     E             1.00 
 SSP    42     K     E     E             1.00 
 SSP    43     I     E     E             1.00 
 SSP    44     K     C     E             1.00 
 SSP    45     H     C     E             1.00 
 SSP    46     L     C     E             1.00 
 SSP    47     G     E     E             1.00 
 SSP    48     K     E     C             1.00 
 SSP    49     G     E     C             1.00 
 SSP    50     H     E     E             1.00 
 SSP    51     Y     E     E             1.00 
 SSP  BREAK 
 SSP    53     F     E     E             1.00 
 SSP    54     Y     E     E             1.00 
 SSP    55     S     E     E             1.00 
 SSP    56     M     E     E             1.00 
 SSP    57     D     E     C             1.00 
 SSP    58     I     E     C             1.00 
 SSP    59     R     E     C             1.00 
 SSP    60     E     E     E             1.00 
 SSP    61     F     E     C             1.00 
 SSP    62     Q     E     C             1.00 
 SSP    63     L     C     C             1.00 
 SSP    64     P     C     C             1.00 
 SSP    65     S     C     C             1.00 
 SSP    66     S     E     C             1.00 
 SSP    67     Q     E     C             1.00 
 SSP    68     I     E     C             1.00 
 SSP    69     S     E     C             1.00 
 SSP    70     M     E     C             1.00 
 SSP    71     V     E     C             1.00 
 SSP    72     P     C     C             1.00 
 SSP    73     N     C     C             1.00 
 SSP    74     V     C     C             1.00 
 SSP    75     G     E     C             1.00 
 SSP    76     L     E     C             1.00 
 SSP    77     K     E     E             1.00 
 SSP    78     F     E     E             1.00 
 SSP    79     S     E     E             1.00 
 SSP    80     I     E     E             1.00 
 SSP    81     S     E     E             1.00 
 SSP    82     N     E     E             1.00 
 SSP    83     A     E     C             1.00 
 SSP    84     N     E     C             1.00 
 SSP    85     I     E     E             1.00 
 SSP    86     K     E     E             1.00 
 SSP    87     I     E     E             1.00 
 SSP    88     S     E     E             1.00 
 SSP    89     G     E     E             1.00 
 SSP    90     K     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              59.8      84.2     44.9     73.7     19.1 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        46.3      60.5     38.1     52.6     19.1 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            5              80.0              20.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            3                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      87    100.0     59.8 
 
 BIN  0.00 - 1.00      1.00      87    100.0     59.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          81              81            81            456 
 ALL CONTACTS (< 8.0A)     318             268           318           2232 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       318        153   48.11   57.09    6.85       0     0.00         268      2232  |   1-9999 
 RES CONTACTS       183        151   82.51   85.31   13.48       0     0.00         177      1120  |   1-4    
 RES CONTACTS        29          0    0.00    0.00    0.00       0     0.00          15       110  |   5-8    
 RES CONTACTS       106          2    1.89    2.63    0.20       0     0.00          76      1002  |   9-9999 
 
 
 
# WARNING! TARGET 3510 atoms, MODEL 3310 atoms, 3256 common with TARGET 
           Number of atoms possible to evaluate: 422 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    74.22           48.2   168    18.5   910     ARMSMC  
     SECONDARY STRUCTURE . .    69.58           53.0   132    21.6   612     ARMSMC  
     SURFACE . . . . . . . .    76.34           45.7    92    17.9   514     ARMSMC  
     BURIED  . . . . . . . .    71.57           51.3    76    19.2   396     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   388     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   351     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   268     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   220     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   168     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   286     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   208     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   195     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   160     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   126     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    94     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    73     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    72     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    41     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    41     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    29     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    2 - 36   35   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    25      9 - 33       4.87    14.60 
  LONGEST_CONTINUOUS_SEGMENT    25     10 - 34       4.57    16.00 
  LONGEST_CONTINUOUS_SEGMENT    25     11 - 35       4.54    16.81 
  LCS LOCAL_SCORE:             67.92 
 
 FRAGMENT  2   38 - 51   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     38 - 47       3.32     8.93 
  LCS LOCAL_SCORE:             69.39 
 
 FRAGMENT  3   53 - 90   38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17     67 - 83       4.84    21.15 
  LCS LOCAL_SCORE:             37.67 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    2 - 36   35   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18     15 - 32       1.85    18.06 
  LONGEST_CONTINUOUS_SEGMENT    18     16 - 33       1.91    18.22 
  LCS LOCAL_SCORE:             39.51 
 
 FRAGMENT  2   38 - 51   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     38 - 46       1.73     9.92 
  LCS LOCAL_SCORE:             53.06 
 
 FRAGMENT  3   53 - 90   38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     83 - 90       1.53    24.79 
  LCS LOCAL_SCORE:             15.86 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    2 - 36   35   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     18 - 31       0.99    18.65 
  LCS LOCAL_SCORE:             26.78 
 
 FRAGMENT  2   38 - 51   14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     38 - 44       0.88    11.45 
  LCS LOCAL_SCORE:             38.78 
 
 FRAGMENT  3   53 - 90   38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     75 - 80       1.00    22.40 
  LONGEST_CONTINUOUS_SEGMENT     6     84 - 89       0.73    23.56 
  LONGEST_CONTINUOUS_SEGMENT     6     85 - 90       0.99    23.89 
  LCS LOCAL_SCORE:             11.15 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       2       N     3   10   19       C        0   0   1   1   2   2   2   2   2   2   2   2   2   3   3   3   3   3   3   3  
 LCS       3       P     3   10   19       C        0   0   1   1   2   2   2   2   3   3   3   3   3   4   4   4   4   4   4   4  
 LCS       4       G     7   10   19       C        0   1   1   1   2   2   2   3   3   3   3   3   3   4   4   4   4   4   4   4  
 LCS       5       V     7   10   19       E        1   1   1   1   2   2   2   3   3   3   3   3   3   4   4   4   4   4   4   4  
 LCS       6       V     7   10   19       E        1   1   1   1   2   2   2   3   3   3   3   3   3   4   4   4   4   4   4   4  
 LCS       7       V     7   10   19       E        1   1   1   1   2   2   2   3   3   3   3   3   3   4   4   4   4   4   4   5  
 LCS       8       R     7   10   19       E        1   1   1   1   2   2   2   3   3   3   3   3   3   4   4   4   4   4   4   5  
 LCS       9       I     7   10   25       E        1   1   1   1   2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5  
 LCS      10       S     7   10   25       E        0   1   1   1   2   2   2   3   3   3   3   4   4   5   5   5   5   5   5   5  
 LCS      11       Q     7   10   25       H        0   1   1   1   2   2   2   3   3   4   4   4   4   5   5   5   5   5   8   8  
 LCS      12       K     6    8   25       H        0   1   1   1   1   2   2   3   3   3   3   4   4   5   5   7   7   8   8   8  
 LCS      13       G     6    8   25       H        0   1   1   1   1   2   2   3   3   3   3   4   4   5   6   7   7   8   8   8  
 LCS      14       L     6    8   25       H        0   1   1   1   2   2   2   3   3   4   4   5   5   6   7   7   7   8   8   8  
 LCS      15       D     6   18   25       H        0   1   1   2   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      16       Y     5   18   25       H        0   1   1   1   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      17       A     5   18   25       H        0   0   1   2   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      18       S    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      19       Q    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      20       Q    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      21       G    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      22       T    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      23       A    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      24       A    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      25       L    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      26       Q    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      27       K    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      28       E    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      29       L    14   18   25       H        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      30       K    14   18   25       C        1   2   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      31       R    14   18   25       C        0   1   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      32       I    12   18   25       C        0   1   2   3   3   3   3   4   4   4   5   5   5   6   7   7   7   8   8   8  
 LCS      33       K     6   18   25       C        0   1   1   1   1   3   3   4   4   4   4   5   5   6   7   7   7   8   8   8  
 LCS      34       I     6    6   25       C        0   1   1   1   1   1   1   1   3   4   4   4   4   5   6   6   7   7   8   8  
 LCS      35       P     6    6   25       C        0   0   1   1   1   1   1   1   2   2   2   3   3   3   4   4   4   5   5   5  
 LCS      36       D     6    6   24       C        0   1   1   1   1   1   1   1   2   2   2   2   2   3   4   4   4   4   4   4  
 LCS      37       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      38       S     7    9   10       E        0   1   1   1   1   1   1   1   1   1   2   2   2   2   3   3   3   4   4   4  
 LCS      39       D     7    9   10       E        0   1   1   1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3   4  
 LCS      40       S     7    9   10       E        0   1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   2  
 LCS      41       F     7    9   10       E        0   1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   2  
 LCS      42       K     7    9   10       E        0   1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   2  
 LCS      43       I     7    9   10       E        0   1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   3  
 LCS      44       K     7    9   10       C        0   1   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   3  
 LCS      45       H     5    9   10       C        0   0   1   1   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   3  
 LCS      46       L     4    9   10       C        0   0   0   0   1   1   1   1   1   1   2   2   2   2   2   2   2   2   2   3  
 LCS      47       G     4    5   10       E        0   0   0   0   1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3  
 LCS      48       K     4    5    9       E        0   0   0   0   1   1   1   1   1   1   1   2   2   2   2   2   3   3   3   3  
 LCS      49       G     4    5    9       E        0   0   0   0   1   1   1   1   2   2   2   2   2   2   2   2   3   3   3   3  
 LCS      50       H     3    4    9       E        0   0   0   0   0   1   1   1   2   2   2   2   2   2   2   2   3   3   3   3  
 LCS      51       Y     3    4    9       E        0   0   0   0   1   1   1   1   2   2   2   2   2   2   2   2   3   3   3   3  
 LCS      52       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      53       F     3    5    8       E        0   0   0   0   1   1   1   1   2   2   2   2   2   2   2   2   3   3   3   3  
 LCS      54       Y     4    5    8       E        0   0   0   0   1   1   1   1   2   2   2   2   2   2   2   2   3   5   5   5  
 LCS      55       S     4    5   13       E        0   0   0   0   1   1   1   1   2   2   2   2   2   2   3   4   4   5   7   8  
 LCS      56       M     4    5   13       E        0   0   0   0   1   1   1   1   2   3   3   5   5   6   7   7   7   8   8   8  
 LCS      57       D     4    5   13       E        0   0   1   1   1   1   2   3   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      58       I     4    5   13       E        0   0   0   0   1   1   2   3   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      59       R     4    5   13       E        0   0   0   1   1   1   2   2   3   4   5   5   5   6   6   7   7   8   8   8  
 LCS      60       E     4    5   13       E        0   0   0   1   1   1   2   3   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      61       F     4    5   13       E        0   0   0   0   1   1   2   3   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      62       Q     0    5   13       E        0   0   0   0   1   1   2   3   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      63       L     0    5   14       C        0   0   0   0   1   1   1   1   1   2   2   2   5   6   7   7   7   8   8   8  
 LCS      64       P     4    5   15       C        0   0   0   0   1   1   1   1   1   2   2   3   3   3   4   6   6   7   8   8  
 LCS      65       S     4    5   15       C        0   0   0   0   1   1   1   1   1   2   2   3   3   3   4   4   4   5   5   5  
 LCS      66       S     4    5   15       E        0   0   0   1   1   1   1   1   1   2   2   3   3   3   4   4   4   4   4   4  
 LCS      67       Q     4    5   17       E        0   0   0   1   1   1   1   1   1   2   2   3   3   3   4   4   4   4   4   4  
 LCS      68       I     3    5   17       E        0   0   0   1   1   1   1   1   1   2   2   3   3   3   4   4   4   4   4   4  
 LCS      69       S     3    5   17       E        0   0   0   1   1   1   1   1   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      70       M     3    5   17       E        0   0   0   1   1   1   1   1   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      71       V     3    4   17       E        0   0   0   0   1   1   1   1   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      72       P     3    5   17       C        0   0   0   1   1   1   1   1   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      73       N     3    5   17       C        0   0   0   1   1   1   1   1   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      74       V     3    7   17       C        0   0   0   1   1   1   1   1   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      75       G     6    7   17       E        0   0   1   1   1   1   1   2   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      76       L     6    7   17       E        0   0   1   1   1   1   1   2   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      77       K     6    7   17       E        0   0   1   1   1   1   1   2   2   3   3   3   3   3   4   4   4   4   4   4  
 LCS      78       F     6    7   17       E        0   0   1   1   1   1   1   2   2   3   3   3   3   3   4   4   4   4   5   6  
 LCS      79       S     6    7   17       E        0   0   1   1   1   1   1   2   2   3   3   3   3   3   4   4   6   7   7   8  
 LCS      80       I     6    7   17       E        0   0   1   1   1   1   2   3   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      81       S     4    6   17       E        0   1   1   1   1   1   2   3   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      82       N     4    6   17       E        0   0   1   1   1   1   1   2   3   4   5   5   5   6   7   7   7   8   8   8  
 LCS      83       A     3    8   17       E        0   0   0   1   1   1   1   2   2   2   3   3   5   6   7   7   7   8   8   8  
 LCS      84       N     6    8   13       E        0   1   1   1   1   1   1   2   2   2   2   3   4   5   7   7   7   8   8   8  
 LCS      85       I     6    8   13       E        0   1   1   1   1   1   1   1   2   2   2   3   4   5   7   7   7   8   8   8  
 LCS      86       K     6    8   10       E        0   1   1   1   1   1   1   1   2   2   2   3   4   5   6   7   7   8   8   8  
 LCS      87       I     6    8   10       E        0   1   1   1   1   1   1   1   2   2   2   3   4   5   5   7   7   8   8   8  
 LCS      88       S     6    8   10       E        0   1   1   1   1   1   1   1   2   2   2   2   2   2   3   6   7   8   8   8  
 LCS      89       G     6    8   10       E        0   1   1   1   1   1   1   1   2   2   2   2   2   2   3   4   4   5   7   8  
 LCS      90       K     6    8   10       E        0   1   1   1   1   1   1   1   2   2   2   2   2   2   3   3   4   5   5   5  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.27 
 
 NUMBER_OF_CA_Tg:  456      NUMBER_OF_CA_Pr:   87      PERCENT_OF_CA:  19.08  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      13      13      15      16      17      18      19      19      22      25      26      27      29      32      35      36      37      39      39  
 GDT PERCENT_OF_CA_Pr   10.34   14.94   14.94   17.24   18.39   19.54   20.69   21.84   21.84   25.29   28.74   29.89   31.03   33.33   36.78   40.23   41.38   42.53   44.83   44.83 
 GDT PERCENT_OF_CA_Tg    1.97    2.85    2.85    3.29    3.51    3.73    3.95    4.17    4.17    4.82    5.48    5.70    5.92    6.36    7.02    7.68    7.89    8.11    8.55    8.55 
 GDT FRAGMENT: Beg-End  18-26   18-30   18-30   18-32   17-32   15-32   15-32   15-33   15-33   16-82   16-81   16-82   15-82   14-83   15-85   14-86   14-87   13-87   11-88   12-88  
 GDT RMS_LOCAL           0.35    0.68    0.68    1.17    1.44    1.63    1.85    2.05    2.05    3.93    4.11    4.19    4.38    4.73    5.29    5.60    5.70    5.83    6.15    6.12 
 GDT RMS_ALL_CA         24.59   24.82   24.82   24.60   24.60   25.06   25.02   25.64   25.64   22.68   22.62   22.62   22.60   22.56   21.84   22.19   22.27   22.29   22.87   22.50 
 
 
 TEST (CA)  RMS =  19.99               (Number of atoms:   87) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   19.99         87    19.1   456     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2298                            CRMSCA  
     SECONDARY STRUCTURE . .   18.24         68    22.2   306     CRMSCA  
     SURFACE . . . . . . . .   19.73         48    18.6   258     CRMSCA  
     BURIED  . . . . . . . .   20.30         39    19.7   198     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   19.89        422    18.7  2254     CRMSMC  
     SECONDARY STRUCTURE . .   18.23        330    21.8  1511     CRMSMC  
     SURFACE . . . . . . . .   19.70        233    18.2  1282     CRMSMC  
     BURIED  . . . . . . . .   20.11        189    19.4   972     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   19.95         74     4.4  1686     CRMSSC  
     RELIABLE SIDE CHAINS  .   19.95         74     5.3  1392     CRMSSC  
     SECONDARY STRUCTURE . .   18.46         58     4.9  1184     CRMSSC  
     SURFACE . . . . . . . .   20.62         41     4.4   939     CRMSSC  
     BURIED  . . . . . . . .   19.10         33     4.4   747     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   19.89        422    12.0  3510     CRMSALL 
     SECONDARY STRUCTURE . .   18.23        330    13.7  2408     CRMSALL 
     SURFACE . . . . . . . .   19.70        233    11.8  1971     CRMSALL 
     BURIED  . . . . . . . .   20.11        189    12.3  1539     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.413      1.000       0.500     87    19.1   456     ERRCA  
     SECONDARY STRUCTURE . .   15.976      1.000       0.500     68    22.2   306     ERRCA  
     SURFACE . . . . . . . .   17.567      1.000       0.500     48    18.6   258     ERRCA  
     BURIED  . . . . . . . .   17.224      1.000       0.500     39    19.7   198     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.345      1.000       0.500    422    18.7  2254     ERRMC  
     SECONDARY STRUCTURE . .   15.948      1.000       0.500    330    21.8  1511     ERRMC  
     SURFACE . . . . . . . .   17.538      1.000       0.500    233    18.2  1282     ERRMC  
     BURIED  . . . . . . . .   17.108      1.000       0.500    189    19.4   972     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.541      1.000       0.500     74     4.4  1686     ERRSC  
     RELIABLE SIDE CHAINS  .   17.541      1.000       0.500     74     5.3  1392     ERRSC  
     SECONDARY STRUCTURE . .   16.334      1.000       0.500     58     4.9  1184     ERRSC  
     SURFACE . . . . . . . .   18.663      1.000       0.500     41     4.4   939     ERRSC  
     BURIED  . . . . . . . .   16.147      1.000       0.500     33     4.4   747     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.345      1.000       0.500    422    12.0  3510     ERRALL 
     SECONDARY STRUCTURE . .   15.948      1.000       0.500    330    13.7  2408     ERRALL 
     SURFACE . . . . . . . .   17.538      1.000       0.500    233    11.8  1971     ERRALL 
     BURIED  . . . . . . . .   17.108      1.000       0.500    189    12.3  1539     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         2         5        23      87     456   DISTCA 
CA  (P)      0.00      0.00      0.44      1.10      5.04             456   DISTCA 
CA  (RMS)    0.00      0.00      2.59      3.25      6.61                   DISTCA 
 
ALL (N)         0         1         8        30       117     422    3510   DISTALL 
ALL (P)      0.00      0.03      0.23      0.85      3.33            3510   DISTALL 
ALL (RMS)    0.00      1.95      2.43      3.63      6.84                   DISTALL 
 
 
 
 
END of the results output 
