 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 36 , MODEL 36 , TARGET 456 
#          The number of residues possible to evaluate: 36 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    18     S     H     C             1.00 
 SSP    19     Q     H     H             1.00 
 SSP    20     Q     H     H             1.00 
 SSP    21     G     H     H             1.00 
 SSP    22     T     H     H             1.00 
 SSP    23     A     H     H             1.00 
 SSP    24     A     H     H             1.00 
 SSP    25     L     H     H             1.00 
 SSP    26     Q     H     H             1.00 
 SSP    27     K     H     H             1.00 
 SSP    28     E     H     H             1.00 
 SSP    29     L     H     C             1.00 
 SSP    30     K     C     C             1.00 
 SSP    31     R     C     C             1.00 
 SSP    32     I     C     C             1.00 
 SSP    33     K     C     C             1.00 
 SSP    34     I     C     C             1.00 
 SSP    35     P     C     C             1.00 
 SSP    36     D     C     C             1.00 
 SSP  BREAK 
 SSP    77     K     E     C             1.00 
 SSP    78     F     E     C             1.00 
 SSP    79     S     E     C             1.00 
 SSP    80     I     E     H             1.00 
 SSP    81     S     E     H             1.00 
 SSP    82     N     E     H             1.00 
 SSP    83     A     E     H             1.00 
 SSP    84     N     E     H             1.00 
 SSP    85     I     E     H             1.00 
 SSP    86     K     E     H             1.00 
 SSP    87     I     E     H             1.00 
 SSP  BREAK 
 SSP    91     W     E     H             1.00 
 SSP    92     K     E     H             1.00 
 SSP    93     A     E     H             1.00 
 SSP    94     Q     E     H             1.00 
 SSP    95     K     E     C             1.00 
 SSP    96     R     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              50.0      83.3      0.0    100.0      7.9 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        54.2     100.0      0.0     93.8      7.9 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            2              50.0              50.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      36    100.0     50.0 
 
 BIN  0.00 - 1.00      1.00      36    100.0     50.0 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          36              36            36            456 
 ALL CONTACTS (< 8.0A)     139              88           139           2232 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       139         76   54.68   86.36    3.41       0     0.00          88      2232  |   1-9999 
 RES CONTACTS        98         76   77.55   89.41    6.79       0     0.00          85      1120  |   1-4    
 RES CONTACTS        12          0    0.00    0.00    0.00       0     0.00           0       110  |   5-8    
 RES CONTACTS        29          0    0.00    0.00    0.00       0     0.00           3      1002  |   9-9999 
 
 
 
# WARNING! TARGET 3510 atoms, MODEL 3455 atoms, 3397 common with TARGET 
           Number of atoms possible to evaluate: 179 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    80.12           47.0    66     7.3   910     ARMSMC  
     SECONDARY STRUCTURE . .    76.00           53.8    52     8.5   612     ARMSMC  
     SURFACE . . . . . . . .    67.76           48.6    37     7.2   514     ARMSMC  
     BURIED  . . . . . . . .    93.54           44.8    29     7.3   396     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   388     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   351     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   268     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   220     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   168     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   286     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   208     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   195     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   160     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   126     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    94     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    73     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    72     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    41     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    41     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    29     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   18 - 36   19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     18 - 31       4.68    10.81 
  LCS LOCAL_SCORE:             63.99 
 
 FRAGMENT  2   77 - 87   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     77 - 87       4.93     4.93 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   91 - 96   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     91 - 96       3.45     3.45 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   18 - 36   19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     18 - 29       0.72    14.37 
  LCS LOCAL_SCORE:             46.81 
 
 FRAGMENT  2   77 - 87   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     77 - 81       1.29    11.27 
  LCS LOCAL_SCORE:             38.02 
 
 FRAGMENT  3   91 - 96   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4     93 - 96       1.52     5.20 
  LCS LOCAL_SCORE:             61.11 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   18 - 36   19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     18 - 29       0.72    14.37 
  LCS LOCAL_SCORE:             45.71 
 
 FRAGMENT  2   77 - 87   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4     77 - 80       0.88     9.77 
  LONGEST_CONTINUOUS_SEGMENT     4     80 - 83       0.83     8.43 
  LCS LOCAL_SCORE:             33.06 
 
 FRAGMENT  3   91 - 96   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3     91 - 93       0.83     7.16 
  LONGEST_CONTINUOUS_SEGMENT     3     92 - 94       0.73     5.96 
  LONGEST_CONTINUOUS_SEGMENT     3     94 - 96       0.12     5.49 
  LCS LOCAL_SCORE:             50.00 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      18       S    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      19       Q    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      20       Q    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      21       G    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      22       T    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      23       A    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      24       A    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      25       L    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      26       Q    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      27       K    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      28       E    12   12   14       H        1   2   2   2   2   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      29       L    12   12   14       H        1   2   2   2   2   2   2   2   3   4   4   4   4   4   4   4   5   5   5   5  
 LCS      30       K     3    4   14       C        0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   3   3   3   4   4  
 LCS      31       R     3    4   14       C        0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   3   3   4   5   5  
 LCS      32       I     3    4    7       C        0   0   0   0   0   0   1   1   1   1   1   2   2   2   3   3   4   5   5   5  
 LCS      33       K     3    4    7       C        0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   3   3   3   4   4  
 LCS      34       I     3    3    7       C        0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   3   3   3   4   4  
 LCS      35       P     3    3    7       C        0   0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   2   3   3   3  
 LCS      36       D     3    3    7       C        0   0   0   0   0   0   0   0   1   1   1   1   1   1   2   2   2   2   2   3  
 LCS      37       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      38       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      39       D     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      40       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      41       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      42       K     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      43       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      44       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      46       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      47       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      48       K     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      49       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      50       H     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      51       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      52       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      53       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      54       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      55       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      56       M     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      57       D     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      58       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      59       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      60       E     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      62       Q     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      63       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      64       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      65       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      66       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      67       Q     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      69       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      70       M     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      71       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      72       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      73       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      74       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      75       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      76       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      77       K     4    5   11       E        0   0   0   1   1   1   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      78       F     4    5   11       E        0   0   1   1   1   1   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      79       S     4    5   11       E        0   0   1   1   1   1   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      80       I     4    5   11       E        0   0   0   1   1   1   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      81       S     4    5   11       E        0   0   1   1   1   1   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      82       N     4    4   11       E        0   0   1   1   1   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      83       A     4    4   11       E        0   0   1   1   1   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      84       N     3    4   11       E        0   0   1   1   1   2   2   3   4   4   4   4   4   4   4   4   5   5   5   5  
 LCS      85       I     3    3   11       E        0   0   0   0   0   0   1   1   2   2   2   4   4   4   4   4   5   5   5   5  
 LCS      86       K     3    3   11       E        0   0   0   0   0   0   0   1   1   1   1   1   3   3   3   4   5   5   5   5  
 LCS      87       I     3    3   11       E        0   0   0   0   0   0   0   0   1   1   1   1   1   3   3   4   5   5   5   5  
 LCS      88       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      89       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      90       K     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      91       W     3    3    6       E        0   0   0   0   0   0   0   0   1   1   1   1   1   1   1   1   1   1   1   1  
 LCS      92       K     3    3    6       E        0   0   0   0   0   0   1   1   1   1   1   1   1   1   1   1   1   1   1   1  
 LCS      93       A     3    4    6       E        0   0   0   0   0   0   1   1   1   1   1   1   1   1   1   1   1   1   1   1  
 LCS      94       Q     3    4    6       E        0   0   0   0   0   0   1   1   1   1   1   1   1   1   1   1   1   1   1   1  
 LCS      95       K     3    4    6       E        0   0   0   0   0   0   1   1   1   1   1   1   1   1   1   1   1   1   1   1  
 LCS      96       R     3    4    6       C        0   0   0   0   0   0   1   1   1   1   1   1   1   1   1   1   1   1   1   1  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.11 
 
 NUMBER_OF_CA_Tg:  456      NUMBER_OF_CA_Pr:   36      PERCENT_OF_CA:   7.89  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      11      12      12      12      12      13      17      19      20      20      21      21      21      21      21      23      23      24      24  
 GDT PERCENT_OF_CA_Pr   25.00   30.56   33.33   33.33   33.33   33.33   36.11   47.22   52.78   55.56   55.56   58.33   58.33   58.33   58.33   58.33   63.89   63.89   66.67   66.67 
 GDT PERCENT_OF_CA_Tg    1.97    2.41    2.63    2.63    2.63    2.63    2.85    3.73    4.17    4.39    4.39    4.61    4.61    4.61    4.61    4.61    5.04    5.04    5.26    5.26 
 GDT FRAGMENT: Beg-End  18-26   18-28   18-29   18-29   18-29   18-29   18-84   18-84   18-84   18-84   18-84   18-85   18-85   18-85   18-85   18-85   18-87   18-87   18-87   18-87  
 GDT RMS_LOCAL           0.31    0.62    0.72    0.72    0.72    0.72    2.81    3.33    3.49    3.58    3.58    3.97    3.97    3.97    3.97    3.97    4.90    4.90    5.51    5.51 
 GDT RMS_ALL_CA         23.01   22.71   22.55   22.55   22.55   22.55   16.66   16.92   17.07   17.13   17.13   16.64   16.64   16.64   16.64   16.64   15.92   15.92   15.82   15.82 
 
 
 TEST (CA)  RMS =  13.16               (Number of atoms:   36) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   13.16         36     7.9   456     CRMSCA  
     CRN = ALL/NP  . . . . .    0.3657                            CRMSCA  
     SECONDARY STRUCTURE . .   11.77         28     9.2   306     CRMSCA  
     SURFACE . . . . . . . .   14.67         20     7.8   258     CRMSCA  
     BURIED  . . . . . . . .   11.00         16     8.1   198     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   13.29        179     7.9  2254     CRMSMC  
     SECONDARY STRUCTURE . .   11.81        139     9.2  1511     CRMSMC  
     SURFACE . . . . . . . .   14.80         99     7.7  1282     CRMSMC  
     BURIED  . . . . . . . .   11.14         80     8.2   972     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   13.77         35     2.1  1686     CRMSSC  
     RELIABLE SIDE CHAINS  .   13.77         35     2.5  1392     CRMSSC  
     SECONDARY STRUCTURE . .   12.34         27     2.3  1184     CRMSSC  
     SURFACE . . . . . . . .   15.53         19     2.0   939     CRMSSC  
     BURIED  . . . . . . . .   11.33         16     2.1   747     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   13.29        179     5.1  3510     CRMSALL 
     SECONDARY STRUCTURE . .   11.81        139     5.8  2408     CRMSALL 
     SURFACE . . . . . . . .   14.80         99     5.0  1971     CRMSALL 
     BURIED  . . . . . . . .   11.14         80     5.2  1539     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.235      1.000       0.500     36     7.9   456     ERRCA  
     SECONDARY STRUCTURE . .   11.075      1.000       0.500     28     9.2   306     ERRCA  
     SURFACE . . . . . . . .   13.737      1.000       0.500     20     7.8   258     ERRCA  
     BURIED  . . . . . . . .   10.357      1.000       0.500     16     8.1   198     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.308      1.000       0.500    179     7.9  2254     ERRMC  
     SECONDARY STRUCTURE . .   11.078      1.000       0.500    139     9.2  1511     ERRMC  
     SURFACE . . . . . . . .   13.814      1.000       0.500     99     7.7  1282     ERRMC  
     BURIED  . . . . . . . .   10.444      1.000       0.500     80     8.2   972     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.757      1.000       0.500     35     2.1  1686     ERRSC  
     RELIABLE SIDE CHAINS  .   12.757      1.000       0.500     35     2.5  1392     ERRSC  
     SECONDARY STRUCTURE . .   11.596      1.000       0.500     27     2.3  1184     ERRSC  
     SURFACE . . . . . . . .   14.604      1.000       0.500     19     2.0   939     ERRSC  
     BURIED  . . . . . . . .   10.563      1.000       0.500     16     2.1   747     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.308      1.000       0.500    179     5.1  3510     ERRALL 
     SECONDARY STRUCTURE . .   11.078      1.000       0.500    139     5.8  2408     ERRALL 
     SURFACE . . . . . . . .   13.814      1.000       0.500     99     5.0  1971     ERRALL 
     BURIED  . . . . . . . .   10.444      1.000       0.500     80     5.2  1539     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         2        12      36     456   DISTCA 
CA  (P)      0.00      0.00      0.00      0.44      2.63             456   DISTCA 
CA  (RMS)    0.00      0.00      0.00      3.58      8.04                   DISTCA 
 
ALL (N)         0         0         1        12        60     179    3510   DISTALL 
ALL (P)      0.00      0.00      0.03      0.34      1.71            3510   DISTALL 
ALL (RMS)    0.00      0.00      2.70      3.90      8.01                   DISTALL 
 
 
 
 
END of the results output 
