 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 81 , MODEL 82 , TARGET 248 
#          The number of residues possible to evaluate: 81 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   148     F     H     C             1.00 
 SSP   149     D     H     C             1.00 
 SSP   150     G     C     C             1.00 
 SSP   151     F     C     C             1.00 
 SSP   152     D     C     C             1.00 
 SSP   153     F     C     C             1.00 
 SSP   154     G     C     C             1.00 
 SSP   155     D     C     E             1.00 
 SSP   156     D     C     C             1.00 
 SSP   157     P     C     C             1.00 
 SSP   158     S     C     C             1.00 
 SSP   159     D     H     C             1.00 
 SSP   160     K     H     C             1.00 
 SSP   161     F     H     C             1.00 
 SSP   162     F     H     C             1.00 
 SSP   163     T     H     C             1.00 
 SSP   164     S     C     C             1.00 
 SSP   165     H     C     C             1.00 
 SSP   166     N     C     C             1.00 
 SSP  BREAK 
 SSP   173     W     C     C             1.00 
 SSP   174     D     C     C             1.00 
 SSP   175     N     E     E             1.00 
 SSP   176     D     C     C             1.00 
 SSP   177     N     C     C             1.00 
 SSP   178     D     C     C             1.00 
 SSP   179     K     C     C             1.00 
 SSP   180     F     C     C             1.00 
 SSP   181     E     C     E             1.00 
 SSP   182     G     C     C             1.00 
 SSP   183     N     C     C             1.00 
 SSP   184     C     H     C             1.00 
 SSP   185     A     H     C             1.00 
 SSP   186     E     H     C             1.00 
 SSP   187     Q     H     E             1.00 
 SSP   188     D     H     C             1.00 
 SSP   189     G     C     C             1.00 
 SSP   190     S     C     C             1.00 
 SSP  BREAK 
 SSP   195     N     C     C             1.00 
 SSP   196     K     C     C             1.00 
 SSP   197     C     C     C             1.00 
 SSP   198     H     C     C             1.00 
 SSP   199     A     C     C             1.00 
 SSP   200     G     E     C             1.00 
 SSP  BREAK 
 SSP   203     N     C     C             1.00 
 SSP   204     G     C     C             1.00 
 SSP   205     V     E     C             1.00 
 SSP   206     Y     C     C             1.00 
 SSP   207     Y     C     C             1.00 
 SSP   208     Q     C     C             1.00 
 SSP   209     G     C     C             1.00 
 SSP   210     G     C     C             1.00 
 SSP   211     T     E     C             1.00 
 SSP   212     Y     C     C             1.00 
 SSP   213     S     C     C             1.00 
 SSP   214     K     C     C             1.00 
 SSP   215     A     C     C             1.00 
 SSP   216     S     C     C             1.00 
 SSP   217     T     C     C             1.00 
 SSP   218     P     C     C             1.00 
 SSP   219     N     C     C             1.00 
 SSP   220     G     C     C             1.00 
 SSP   221     Y     C     C             1.00 
 SSP   222     D     C     C             1.00 
 SSP  BREAK 
 SSP   230     W     C     C             1.00 
 SSP   231     K     C     C             1.00 
 SSP   232     T     C     C             1.00 
 SSP   233     R     C     H             1.00 
 SSP  BREAK 
 SSP   236     S     C     H             1.00 
 SSP   237     M     C     H             1.00 
 SSP   238     K     C     H             1.00 
 SSP   239     K     E     H             1.00 
 SSP   240     T     E     C             1.00 
 SSP   241     T     E     C             1.00 
 SSP   242     M     E     C             1.00 
 SSP   243     K     E     C             1.00 
 SSP   244     I     E     C             1.00 
 SSP   245     I     E     C             1.00 
 SSP   246     P     E     C             1.00 
 SSP   247     F     C     C             1.00 
 SSP   248     N     C     C             1.00 
 SSP   249     R     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              64.2       0.0      8.3     89.5     32.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        47.7       0.0      8.3     61.9     32.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            5               0.0              20.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      81    100.0     64.2 
 
 BIN  0.00 - 1.00      1.00      81    100.0     64.2 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          79              79            97            249 
 ALL CONTACTS (< 8.0A)     279             253           381           1264 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       279        130   46.59   51.38   10.28       0     0.00         253      1264  |   1-9999 
 RES CONTACTS       150        119   79.33   78.29   20.88       0     0.00         152       570  |   1-4    
 RES CONTACTS        54          5    9.26   25.00    6.17       0     0.00          20        81  |   5-8    
 RES CONTACTS        75          6    8.00    7.41    0.98       0     0.00          81       613  |   9-9999 
 
 
 
# WARNING! TARGET 1995 atoms, MODEL 1837 atoms, 1737 common with TARGET 
           Number of atoms possible to evaluate: 397 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    96.38           28.9   152    30.6   496     ARMSMC  
     SECONDARY STRUCTURE . .    89.99           18.8    16    10.4   154     ARMSMC  
     SURFACE . . . . . . . .    86.78           32.5    80    31.9   251     ARMSMC  
     BURIED  . . . . . . . .   106.03           25.0    72    29.4   245     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   205     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   199     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   106     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    99     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   164     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   131     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    52     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    78     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    51     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    40     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    26     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  148 - 166  19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    154 - 164      4.66    10.93 
  LONGEST_CONTINUOUS_SEGMENT    11    155 - 165      4.61    11.47 
  LCS LOCAL_SCORE:             54.85 
 
 FRAGMENT  2  173 - 190  18   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    173 - 188      4.73     6.91 
  LCS LOCAL_SCORE:             85.19 
 
 FRAGMENT  3  195 - 200  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    195 - 200      2.56     2.56 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  203 - 222  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    205 - 222      4.72     6.04 
  LCS LOCAL_SCORE:             88.50 
 
 FRAGMENT  5  230 - 233  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    230 - 233      1.59     1.59 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  236 - 250  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    239 - 247      4.91     9.18 
  LONGEST_CONTINUOUS_SEGMENT     9    240 - 248      4.77     9.51 
  LONGEST_CONTINUOUS_SEGMENT     9    242 - 250      4.48    11.10 
  LCS LOCAL_SCORE:             58.67 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  148 - 166  19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    148 - 153      1.81    16.04 
  LCS LOCAL_SCORE:             26.59 
 
 FRAGMENT  2  173 - 190  18   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    175 - 182      2.00     7.96 
  LCS LOCAL_SCORE:             33.95 
 
 FRAGMENT  3  195 - 200  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    196 - 200      1.80     3.47 
  LCS LOCAL_SCORE:             77.78 
 
 FRAGMENT  4  203 - 222  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    208 - 215      1.76     8.25 
  LCS LOCAL_SCORE:             35.00 
 
 FRAGMENT  5  230 - 233  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    230 - 233      1.59     1.59 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  236 - 250  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    244 - 250      1.86    15.77 
  LCS LOCAL_SCORE:             36.89 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  148 - 166  19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    159 - 163      0.79    13.47 
  LCS LOCAL_SCORE:             20.50 
 
 FRAGMENT  2  173 - 190  18   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    174 - 177      0.81     8.24 
  LONGEST_CONTINUOUS_SEGMENT     4    178 - 181      0.38    10.33 
  LONGEST_CONTINUOUS_SEGMENT     4    181 - 184      0.80    12.40 
  LCS LOCAL_SCORE:             20.06 
 
 FRAGMENT  3  195 - 200  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    197 - 200      0.62     5.00 
  LCS LOCAL_SCORE:             61.11 
 
 FRAGMENT  4  203 - 222  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    205 - 209      0.55    15.83 
  LONGEST_CONTINUOUS_SEGMENT     5    209 - 213      0.83    11.64 
  LCS LOCAL_SCORE:             21.50 
 
 FRAGMENT  5  230 - 233  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    230 - 232      0.84     3.47 
  LONGEST_CONTINUOUS_SEGMENT     3    231 - 233      0.24     3.36 
  LCS LOCAL_SCORE:             75.00 
 
 FRAGMENT  6  236 - 250  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    245 - 250      0.39    17.37 
  LCS LOCAL_SCORE:             29.78 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     148       F     3    6    8       H        0   1   1   1   2   2   2   2   2   2   2   2   2   3   4   4   5   5   6   6  
 LCS     149       D     4    6   10       H        1   1   1   1   2   2   2   2   2   2   3   3   4   4   4   4   5   5   6   6  
 LCS     150       G     4    6   10       C        1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4   5   5   6   6  
 LCS     151       F     4    6   10       C        1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4   5   5   6   6  
 LCS     152       D     4    6   10       C        1   1   1   1   2   2   2   2   2   2   3   3   4   4   4   4   4   4   4   5  
 LCS     153       F     3    6   10       C        1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4   5   5   6   6  
 LCS     154       G     3    4   11       C        1   1   1   1   1   2   2   2   3   3   3   3   4   4   4   4   5   5   6   6  
 LCS     155       D     3    4   11       C        0   1   1   1   1   2   2   2   3   3   4   4   4   4   4   4   5   5   6   6  
 LCS     156       D     3    4   11       C        0   1   1   1   1   2   2   2   3   3   4   4   4   4   4   4   5   5   6   6  
 LCS     157       P     3    4   11       C        0   1   1   1   2   2   2   2   3   3   4   4   4   4   4   4   5   5   6   6  
 LCS     158       S     3    4   11       C        0   1   1   1   1   2   2   2   3   3   4   4   4   4   4   4   5   5   6   6  
 LCS     159       D     5    5   11       H        1   1   2   2   2   2   2   2   3   3   4   4   4   4   4   4   5   5   6   6  
 LCS     160       K     5    5   11       H        1   1   2   2   2   2   2   2   3   3   4   4   4   4   4   4   4   4   6   6  
 LCS     161       F     5    5   11       H        1   1   2   2   2   2   2   2   3   3   4   4   4   4   4   4   4   4   6   6  
 LCS     162       F     5    5   11       H        1   1   2   2   2   2   2   2   3   3   4   4   4   4   4   4   4   5   6   6  
 LCS     163       T     5    5   11       H        1   1   2   2   2   2   2   2   3   3   4   4   4   4   4   4   4   4   5   6  
 LCS     164       S     4    5   11       C        1   1   1   1   1   2   2   2   3   3   4   4   4   4   4   4   5   5   6   6  
 LCS     165       H     4    5   11       C        1   1   1   1   1   2   2   2   2   2   2   3   4   4   4   4   5   5   6   6  
 LCS     166       N     4    5    8       C        1   1   1   1   1   2   2   2   2   2   2   3   3   3   4   4   4   5   6   6  
 LCS     167       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     168       M     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     169       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     170       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     171       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     172       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     173       W     3    6   16       C        1   1   1   1   2   2   2   2   4   5   5   5   5   5   6   6   6   6   6   6  
 LCS     174       D     4    6   16       C        1   1   1   2   2   3   3   3   4   5   5   5   5   6   6   6   7   7   7   7  
 LCS     175       N     4    8   16       E        1   1   1   2   2   3   3   3   4   5   5   5   5   6   6   6   7   8   9  10  
 LCS     176       D     4    8   16       C        1   1   1   2   2   3   3   4   5   5   5   6   6   7   8   9   9  10  10  11  
 LCS     177       N     4    8   16       C        1   1   1   2   2   3   3   4   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     178       D     4    8   16       C        1   1   1   2   2   2   3   4   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     179       K     4    8   16       C        1   1   1   2   2   3   3   4   4   5   6   6   8   8   8   9   9  10  10  11  
 LCS     180       F     4    8   16       C        1   1   1   2   2   3   3   3   4   5   6   6   8   8   8   9   9  10  10  11  
 LCS     181       E     4    8   16       C        1   1   1   2   2   3   3   4   4   5   6   6   8   8   8   9   9  10  10  11  
 LCS     182       G     4    8   16       C        1   1   1   2   2   3   3   3   4   5   6   6   8   8   8   9   9  10  10  11  
 LCS     183       N     4    5   16       C        1   1   1   1   2   2   2   3   4   5   5   5   5   6   7   8   9  10  10  11  
 LCS     184       C     4    5   16       H        1   1   1   1   2   2   2   3   4   5   5   5   5   5   6   6   6   6   6   7  
 LCS     185       A     3    4   16       H        1   1   1   2   2   2   2   3   4   5   5   5   5   6   6   6   7   7   9  11  
 LCS     186       E     3    4   16       H        1   1   1   1   2   2   3   3   4   4   5   5   5   6   6   6   7   7  10  11  
 LCS     187       Q     3    4   16       H        1   1   1   1   2   2   2   3   4   4   5   5   5   6   6   6   7   7  10  11  
 LCS     188       D     3    4   16       H        1   1   1   1   1   2   2   3   4   4   4   5   5   6   6   6   7   7   7  11  
 LCS     189       G     3    4   10       C        1   1   1   1   1   1   2   3   4   4   5   6   6   7   8   9   9  10  10  11  
 LCS     190       S     3    4   10       C        1   1   1   1   1   2   3   4   5   5   5   6   7   8   8   9   9  10  10  11  
 LCS     191       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     192       W     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     193       W     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     194       M     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     195       N     3    3    6       C        0   0   1   1   1   1   2   2   2   4   6   6   8   8   8   9   9  10  10  11  
 LCS     196       K     3    5    6       C        0   1   1   2   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  
 LCS     197       C     4    5    6       C        0   1   1   2   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  
 LCS     198       H     4    5    6       C        1   1   1   2   2   2   3   4   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     199       A     4    5    6       C        1   1   1   1   2   2   3   4   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     200       G     4    5    6       E        1   1   1   2   2   2   2   3   4   4   6   6   8   8   8   9   9  10  10  11  
 LCS     201       H     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     202       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     203       N     3    4   15       C        0   1   1   1   1   1   2   2   3   3   3   3   6   6   7   7   8   9  10  10  
 LCS     204       G     3    6   15       C        1   1   1   1   1   2   2   3   4   4   5   6   6   7   7   8   8   9  10  11  
 LCS     205       V     5    7   18       E        1   2   2   2   2   4   4   4   4   5   5   6   6   7   7   8   8   9   9   9  
 LCS     206       Y     5    7   18       C        1   2   2   2   3   4   4   5   5   5   5   6   6   7   7   8   8   9  10  11  
 LCS     207       Y     5    7   18       C        1   2   2   2   3   4   4   5   5   5   5   6   6   7   7   8   9  10  10  11  
 LCS     208       Q     5    8   18       C        1   2   2   2   3   4   4   5   5   5   5   6   6   7   7   8   9  10  10  11  
 LCS     209       G     5    8   18       C        1   2   2   2   3   4   4   5   5   5   5   6   6   7   7   8   8  10  10  11  
 LCS     210       G     5    8   18       C        1   1   2   2   3   4   4   5   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     211       T     5    8   18       E        1   1   2   2   3   4   4   5   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     212       Y     5    8   18       C        1   1   2   2   3   4   4   5   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     213       S     5    8   18       C        1   1   2   2   3   4   4   5   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     214       K     4    8   18       C        1   1   1   2   3   4   4   5   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     215       A     4    8   18       C        1   1   1   2   3   4   4   5   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     216       S     4    7   18       C        1   1   1   1   2   2   3   4   5   5   6   6   8   8   8   9   9  10  10  11  
 LCS     217       T     4    7   18       C        1   1   1   2   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  
 LCS     218       P     4    7   18       C        1   1   1   1   2   2   3   3   3   4   4   6   6   6   7   8   8   9   9   9  
 LCS     219       N     4    7   18       C        1   1   1   1   2   2   3   3   3   4   4   6   6   6   7   7   8   8   8   9  
 LCS     220       G     4    7   18       C        1   1   1   1   2   4   4   5   5   5   5   6   6   7   7   8   8   8   9   9  
 LCS     221       Y     4    5   18       C        1   1   2   2   3   4   4   5   5   5   5   6   6   7   7   8   8   8   9   9  
 LCS     222       D     3    5   18       C        1   1   1   1   3   4   4   5   5   5   5   6   6   7   7   8   8   8   9   9  
 LCS     223       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     224       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     225       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     226       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     227       W     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     228       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     229       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     230       W     3    4    4       C        0   1   1   1   1   1   2   2   2   2   3   3   3   6   7   8   8   8   9   9  
 LCS     231       K     3    4    4       C        1   1   1   1   1   1   2   2   4   4   5   6   6   7   7   8   8   8   9   9  
 LCS     232       T     3    4    4       C        1   1   1   1   1   1   2   2   2   2   5   6   6   7   7   8   8   8   9   9  
 LCS     233       R     3    4    4       C        1   1   1   1   1   1   1   2   2   2   3   3   3   4   6   6   6   8   9   9  
 LCS     234       W     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     235       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     236       S     3    3    8       C        0   1   1   1   1   1   2   2   2   4   4   6   6   6   6   6   6   6   7   8  
 LCS     237       M     3    4    8       C        1   1   1   1   1   2   2   2   2   2   3   6   6   6   6   6   6   6   7   8  
 LCS     238       K     3    4    8       C        1   1   1   1   1   2   2   2   2   2   2   6   6   6   6   6   6   6   7   8  
 LCS     239       K     3    4    9       E        1   1   1   1   1   2   2   2   2   2   3   6   6   6   6   6   6   6   7   8  
 LCS     240       T     3    4    9       E        1   1   1   1   1   2   2   2   2   2   3   3   4   4   4   5   5   5   7   8  
 LCS     241       T     4    5    9       E        1   1   1   1   1   2   2   2   2   2   3   3   4   4   4   4   5   5   7   7  
 LCS     242       M     4    5    9       E        1   1   1   1   1   2   2   2   2   2   2   3   4   4   4   4   5   5   5   5  
 LCS     243       K     4    5    9       E        1   1   1   1   1   2   2   2   2   3   3   3   4   4   4   4   5   5   5   5  
 LCS     244       I     4    7    9       E        1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   5   5   5   5  
 LCS     245       I     6    7    9       E        2   2   2   2   2   2   2   2   2   3   3   3   4   4   4   4   5   5   5   5  
 LCS     246       P     6    7    9       E        2   2   2   2   2   2   2   2   2   3   3   3   4   4   4   4   4   5   5   5  
 LCS     247       F     6    7    9       C        2   2   2   2   2   2   2   2   2   3   3   3   4   4   4   4   5   5   5   5  
 LCS     248       N     6    7    9       C        2   2   2   2   2   2   2   2   2   3   3   3   4   4   4   4   5   5   5   5  
 LCS     249       R     6    7    9       C        2   2   2   2   2   2   2   2   2   3   3   3   4   4   4   4   5   5   5   5  
 LCS     250       L     6    7    9       -        2   2   2   2   2   2   2   2   2   3   3   3   4   4   4   4   5   5   5   5  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.53 
 
 NUMBER_OF_CA_Tg:  249      NUMBER_OF_CA_Pr:   82      PERCENT_OF_CA:  32.93  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       6       6       7       8      10      12      13      13      14      16      16      20      20      21      23      24      26      26      29  
 GDT PERCENT_OF_CA_Pr    6.10    7.32    7.32    8.54    9.76   12.20   14.63   15.85   15.85   17.07   19.51   19.51   24.39   24.39   25.61   28.05   29.27   31.71   31.71   35.37 
 GDT PERCENT_OF_CA_Tg    2.01    2.41    2.41    2.81    3.21    4.02    4.82    5.22    5.22    5.62    6.43    6.43    8.03    8.03    8.43    9.24    9.64   10.44   10.44   11.65 
 GDT FRAGMENT: Beg-End 245-249 245-250 245-250 208-221 208-222 208-221 207-222 206-222 206-222 205-222 178-217 178-217 177-217 177-217 177-217 176-217 176-217 176-217 176-217 176-217 
 GDT RMS_LOCAL           0.33    0.39    0.39    1.21    1.60    2.02    2.49    2.69    2.69    3.15    4.07    4.07    4.87    4.87    5.08    5.57    5.80    6.37    6.32    6.89 
 GDT RMS_ALL_CA         57.65   57.15   57.15   40.93   40.60   40.17   39.40   38.74   38.74   37.80   19.51   19.51   20.06   20.06   20.10   20.30   20.47   19.64   20.02   20.58 
 
 
 TEST (CA)  RMS =  16.87               (Number of atoms:   82) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   16.87         82    32.9   249     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2058                            CRMSCA  
     SECONDARY STRUCTURE . .   17.77          8    10.4    77     CRMSCA  
     SURFACE . . . . . . . .   17.70         42    33.3   126     CRMSCA  
     BURIED  . . . . . . . .   15.96         40    32.5   123     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   16.95        397    32.6  1216     CRMSMC  
     SECONDARY STRUCTURE . .   17.78         40    10.5   381     CRMSMC  
     SURFACE . . . . . . . .   17.66        206    33.5   615     CRMSMC  
     BURIED  . . . . . . . .   16.14        191    31.8   601     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   17.59         70     7.0  1000     CRMSSC  
     RELIABLE SIDE CHAINS  .   17.59         70     7.9   888     CRMSSC  
     SECONDARY STRUCTURE . .   18.08          8     2.5   325     CRMSSC  
     SURFACE . . . . . . . .   18.56         38     7.6   498     CRMSSC  
     BURIED  . . . . . . . .   16.36         32     6.4   502     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.95        397    19.9  1995     CRMSALL 
     SECONDARY STRUCTURE . .   17.78         40     6.3   633     CRMSALL 
     SURFACE . . . . . . . .   17.66        206    20.6  1002     CRMSALL 
     BURIED  . . . . . . . .   16.14        191    19.2   993     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.834      1.000       0.500     82    32.9   249     ERRCA  
     SECONDARY STRUCTURE . .   17.534      1.000       0.500      8    10.4    77     ERRCA  
     SURFACE . . . . . . . .   16.737      1.000       0.500     42    33.3   126     ERRCA  
     BURIED  . . . . . . . .   14.886      1.000       0.500     40    32.5   123     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.914      1.000       0.500    397    32.6  1216     ERRMC  
     SECONDARY STRUCTURE . .   17.536      1.000       0.500     40    10.5   381     ERRMC  
     SURFACE . . . . . . . .   16.741      1.000       0.500    206    33.5   615     ERRMC  
     BURIED  . . . . . . . .   15.022      1.000       0.500    191    31.8   601     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.602      1.000       0.500     70     7.0  1000     ERRSC  
     RELIABLE SIDE CHAINS  .   16.602      1.000       0.500     70     7.9   888     ERRSC  
     SECONDARY STRUCTURE . .   17.768      1.000       0.500      8     2.5   325     ERRSC  
     SURFACE . . . . . . . .   17.649      1.000       0.500     38     7.6   498     ERRSC  
     BURIED  . . . . . . . .   15.357      1.000       0.500     32     6.4   502     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.914      1.000       0.500    397    19.9  1995     ERRALL 
     SECONDARY STRUCTURE . .   17.536      1.000       0.500     40     6.3   633     ERRALL 
     SURFACE . . . . . . . .   16.741      1.000       0.500    206    20.6  1002     ERRALL 
     BURIED  . . . . . . . .   15.022      1.000       0.500    191    19.2   993     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         3        16      82     249   DISTCA 
CA  (P)      0.00      0.00      0.00      1.20      6.43             249   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.19      7.70                   DISTCA 
 
ALL (N)         0         2         3        11        71     397    1995   DISTALL 
ALL (P)      0.00      0.10      0.15      0.55      3.56            1995   DISTALL 
ALL (RMS)    0.00      1.53      1.95      3.81      7.63                   DISTALL 
 
 
 
 
END of the results output 
