 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 111 , MODEL 111 , TARGET 248 
#          The number of residues possible to evaluate: 111 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    17     K     C     C             1.00 
 SSP    18     G     C     E             1.00 
 SSP    19     A     C     E             1.00 
 SSP    20     K     C     E             1.00 
 SSP    21     Q     C     E             1.00 
 SSP    22     S     C     C             1.00 
 SSP    23     G     E     C             1.00 
 SSP    24     L     E     C             1.00 
 SSP    25     Y     E     C             1.00 
 SSP    26     F     E     C             1.00 
 SSP    27     I     E     C             1.00 
 SSP    28     K     C     C             1.00 
 SSP    29     P     C     C             1.00 
 SSP  BREAK 
 SSP    33     N     C     C             1.00 
 SSP    34     Q     C     C             1.00 
 SSP    35     Q     C     C             1.00 
 SSP    36     F     E     E             1.00 
 SSP    37     L     E     E             1.00 
 SSP    38     V     E     E             1.00 
 SSP    39     Y     E     E             1.00 
 SSP    40     C     E     E             1.00 
 SSP    41     E     E     E             1.00 
 SSP    42     I     E     E             1.00 
 SSP    43     D     C     E             1.00 
 SSP    44     G     C     C             1.00 
 SSP    45     S     C     C             1.00 
 SSP    46     G     C     C             1.00 
 SSP    47     N     C     C             1.00 
 SSP    48     G     E     E             1.00 
 SSP    49     W     E     E             1.00 
 SSP    50     T     E     E             1.00 
 SSP    51     V     E     E             1.00 
 SSP    52     F     E     E             1.00 
 SSP    53     Q     E     E             1.00 
 SSP    54     K     E     E             1.00 
 SSP    55     R     E     E             1.00 
 SSP    56     L     C     C             1.00 
 SSP    57     D     C     C             1.00 
 SSP    58     G     C     C             1.00 
 SSP    59     S     C     C             1.00 
 SSP  BREAK 
 SSP    63     K     C     C             1.00 
 SSP    64     K     C     E             1.00 
 SSP    65     N     C     E             1.00 
 SSP    66     W     H     E             1.00 
 SSP    67     I     H     E             1.00 
 SSP  BREAK 
 SSP    74     G     E     E             1.00 
 SSP    75     H     C     E             1.00 
 SSP    76     L     C     E             1.00 
 SSP    77     S     C     E             1.00 
 SSP    78     P     C     C             1.00 
 SSP    79     T     C     C             1.00 
 SSP    80     G     C     C             1.00 
 SSP    81     T     C     C             1.00 
 SSP    82     T     C     E             1.00 
 SSP    83     E     C     E             1.00 
 SSP    84     F     E     E             1.00 
 SSP    85     W     E     C             1.00 
 SSP    86     L     C     C             1.00 
 SSP    87     G     C     C             1.00 
 SSP    88     N     H     C             1.00 
 SSP    89     E     H     C             1.00 
 SSP    90     K     H     E             1.00 
 SSP    91     I     H     E             1.00 
 SSP    92     H     H     E             1.00 
 SSP    93     L     H     E             1.00 
 SSP    94     I     H     E             1.00 
 SSP    95     S     H     E             1.00 
 SSP    96     T     H     C             1.00 
 SSP    97     Q     H     C             1.00 
 SSP    98     S     H     C             1.00 
 SSP    99     A     H     C             1.00 
 SSP   100     I     C     E             1.00 
 SSP   101     P     C     E             1.00 
 SSP   102     Y     E     E             1.00 
 SSP  BREAK 
 SSP   106     V     E     E             1.00 
 SSP   107     E     E     E             1.00 
 SSP   108     L     E     E             1.00 
 SSP   109     E     E     C             1.00 
 SSP   110     D     C     C             1.00 
 SSP   111     W     C     C             1.00 
 SSP   112     N     C     C             1.00 
 SSP   113     G     C     H             1.00 
 SSP   114     R     C     H             1.00 
 SSP   115     T     E     H             1.00 
 SSP   116     S     E     C             1.00 
 SSP   117     T     E     C             1.00 
 SSP   118     A     E     E             1.00 
 SSP   119     D     E     E             1.00 
 SSP   120     Y     E     E             1.00 
 SSP   121     A     E     E             1.00 
 SSP  BREAK 
 SSP   124     K     E     E             1.00 
 SSP   125     V     E     E             1.00 
 SSP   126     G     C     E             1.00 
 SSP   127     P     C     E             1.00 
 SSP   128     E     H     E             1.00 
 SSP   129     A     H     C             1.00 
 SSP   130     D     H     C             1.00 
 SSP   131     K     C     C             1.00 
 SSP   132     Y     C     C             1.00 
 SSP   133     R     C     C             1.00 
 SSP   134     L     E     C             1.00 
 SSP   135     T     E     C             1.00 
 SSP   136     Y     C     C             1.00 
 SSP   137     A     C     C             1.00 
 SSP   138     Y     E     E             1.00 
 SSP   139     F     E     E             1.00 
 SSP   140     A     E     C             1.00 
 SSP   141     G     E     C             1.00 
 SSP   142     G     C     C             1.00 
 SSP   143     D     C     E             1.00 
 SSP   144     A     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              55.0       0.0     67.4     62.7     44.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        51.7       0.0     71.6     52.1     44.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           13              60.0              24.6 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     111    100.0     55.0 
 
 BIN  0.00 - 1.00      1.00     111    100.0     55.0 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         105             105           105            249 
 ALL CONTACTS (< 8.0A)     475             376           475           1264 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       475        196   41.26   52.13   15.51       0     0.00         376      1264  |   1-9999 
 RES CONTACTS       196        164   83.67   82.00   28.77       0     0.00         200       570  |   1-4    
 RES CONTACTS        30          9   30.00   25.71   11.11       0     0.00          35        81  |   5-8    
 RES CONTACTS       249         23    9.24   16.31    3.75       0     0.00         141       613  |   9-9999 
 
 
 
# WARNING! TARGET 1995 atoms, MODEL 1792 atoms, 1651 common with TARGET 
           Number of atoms possible to evaluate: 536 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    73.29           48.1   210    42.3   496     ARMSMC  
     SECONDARY STRUCTURE . .    71.47           52.1    96    62.3   154     ARMSMC  
     SURFACE . . . . . . . .    75.05           51.3   113    45.0   251     ARMSMC  
     BURIED  . . . . . . . .    71.18           44.3    97    39.6   245     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   205     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   199     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   106     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    99     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   164     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   131     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    52     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    78     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    51     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    40     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    26     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   17 - 29   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     19 - 29       4.11     7.78 
  LCS LOCAL_SCORE:             82.25 
 
 FRAGMENT  2   33 - 59   27   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    26     34 - 59       4.93     5.52 
  LCS LOCAL_SCORE:             95.88 
 
 FRAGMENT  3   63 - 67   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     63 - 67       1.17     1.17 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   74 - 102  29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19     74 - 92       4.27    13.78 
  LCS LOCAL_SCORE:             61.24 
 
 FRAGMENT  5  106 - 121  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    106 - 121      4.37     4.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  124 - 144  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    125 - 144      4.93     5.09 
  LCS LOCAL_SCORE:             94.56 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   17 - 29   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     21 - 29       1.77    10.32 
  LCS LOCAL_SCORE:             61.54 
 
 FRAGMENT  2   33 - 59   27   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     36 - 45       1.68    13.68 
  LCS LOCAL_SCORE:             31.14 
 
 FRAGMENT  3   63 - 67   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     63 - 67       1.17     1.17 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   74 - 102  29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     76 - 85       1.96    13.95 
  LCS LOCAL_SCORE:             26.75 
 
 FRAGMENT  5  106 - 121  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    115 - 121      2.00     9.44 
  LCS LOCAL_SCORE:             39.06 
 
 FRAGMENT  6  124 - 144  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    134 - 143      1.92     7.10 
  LONGEST_CONTINUOUS_SEGMENT    10    135 - 144      1.91     8.68 
  LCS LOCAL_SCORE:             39.46 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   17 - 29   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     22 - 29       0.75    12.17 
  LCS LOCAL_SCORE:             52.66 
 
 FRAGMENT  2   33 - 59   27   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     37 - 44       0.99    17.62 
  LCS LOCAL_SCORE:             22.22 
 
 FRAGMENT  3   63 - 67   5    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4     63 - 66       0.65     2.15 
  LONGEST_CONTINUOUS_SEGMENT     4     64 - 67       0.83     1.64 
  LCS LOCAL_SCORE:             80.00 
 
 FRAGMENT  4   74 - 102  29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     96 - 101      0.86    19.86 
  LCS LOCAL_SCORE:             16.53 
 
 FRAGMENT  5  106 - 121  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    116 - 121      0.91    11.46 
  LCS LOCAL_SCORE:             31.25 
 
 FRAGMENT  6  124 - 144  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    124 - 128      0.87    10.60 
  LONGEST_CONTINUOUS_SEGMENT     5    128 - 132      0.75    27.39 
  LONGEST_CONTINUOUS_SEGMENT     5    132 - 136      0.94     9.65 
  LONGEST_CONTINUOUS_SEGMENT     5    138 - 142      0.72     7.16 
  LCS LOCAL_SCORE:             23.13 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      17       K     5    5    9       C        1   1   2   2   2   2   2   2   2   3   5   6   6   8   9  10  10  11  12  13  
 LCS      18       G     5    6    9       C        1   1   2   2   2   2   2   2   2   3   5   6   8   8   8   8   9  10  10  11  
 LCS      19       A     5    6   11       C        1   1   2   2   2   2   3   4   5   6   6   8   8   8   8   8  15  16  16  17  
 LCS      20       K     5    6   11       C        1   1   2   2   2   2   3   4   5   8  10  12  12  13  14  15  15  16  16  17  
 LCS      21       Q     5    9   11       C        1   1   2   2   3   3   3   3   4   4  10  12  12  13  14  15  15  16  16  17  
 LCS      22       S     8    9   11       C        1   2   3   3   3   3   4   4   6   7  10  12  12  13  14  15  15  16  16  18  
 LCS      23       G     8    9   11       E        1   2   3   3   3   3   4   5   7   8  10  12  12  13  14  15  15  16  16  17  
 LCS      24       L     8    9   11       E        1   2   3   3   3   3   4   5   6   8   9  12  12  13  14  15  15  16  16  17  
 LCS      25       Y     8    9   11       E        1   2   3   3   3   3   4   4   6   7   8  10  12  13  13  14  15  16  16  17  
 LCS      26       F     8    9   11       E        1   2   3   3   3   3   4   4   4   4   7   8   9  10  12  13  14  14  15  16  
 LCS      27       I     8    9   11       E        1   2   3   3   3   3   4   4   4   4   5   6   8   9  10  11  14  14  15  15  
 LCS      28       K     8    9   11       C        1   2   3   3   3   3   4   4   4   4   5   6   7   9  10  11  12  14  14  15  
 LCS      29       P     8    9   11       C        1   2   3   3   3   3   4   4   4   4   4   6   7   8   8  10  12  13  14  14  
 LCS      30       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      31       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      32       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      33       N     6    8   23       C        1   2   2   2   3   4   5   7   8   8   8   9  10  12  13  13  14  14  15  16  
 LCS      34       Q     6    8   26       C        1   2   2   2   3   4   5   7   8   8   9  11  12  13  13  14  15  16  16  17  
 LCS      35       Q     6    8   26       C        1   2   2   2   3   4   5   7   8   8   9  12  12  13  14  15  15  16  16  17  
 LCS      36       F     6   10   26       E        1   2   2   3   3   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      37       L     8   10   26       E        1   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  16  18  
 LCS      38       V     8   10   26       E        1   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  17  20  
 LCS      39       Y     8   10   26       E        2   2   2   3   3   5   6   7   8   8  10  12  12  13  14  15  15  16  18  20  
 LCS      40       C     8   10   26       E        2   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  17  20  
 LCS      41       E     8   10   26       E        2   2   2   3   3   4   4   5   7   8  10  12  12  13  14  15  15  16  16  17  
 LCS      42       I     8   10   26       E        2   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      43       D     8   10   26       C        2   2   2   3   3   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      44       G     8   10   26       C        2   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      45       S     3   10   26       C        2   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      46       G     3    4   26       C        1   1   1   1   2   2   4   5   6   7   8   9  10  13  13  15  15  16  16  17  
 LCS      47       N     6    7   26       C        1   1   2   2   2   2   4   5   6   7   8  10  10  13  14  15  15  16  16  17  
 LCS      48       G     6    7   26       E        1   2   2   2   2   3   4   5   6   7   8   8   9  10  12  14  15  16  16  17  
 LCS      49       W     6    7   26       E        1   2   2   2   2   3   4   6   6   8   9  11  12  13  14  15  15  16  16  17  
 LCS      50       T     6    7   26       E        1   2   2   2   2   3   4   6   8   8  10  12  12  13  14  15  16  16  18  20  
 LCS      51       V     6    7   26       E        1   2   2   2   2   3   4   6   8   8  10  12  12  13  14  15  15  16  17  20  
 LCS      52       F     6    8   26       E        1   2   2   2   3   5   6   7   8   8  10  12  12  13  15  17  18  18  19  20  
 LCS      53       Q     6    8   26       E        1   2   2   2   3   5   6   7   8   8  10  12  12  13  15  17  18  18  19  20  
 LCS      54       K     5    8   26       E        1   2   2   3   4   5   6   7   8   8  10  12  12  13  15  16  18  18  19  20  
 LCS      55       R     5    8   26       E        1   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  16  18  19  20  
 LCS      56       L     5    8   26       C        1   2   2   2   3   3   4   5   5   6   6   8  12  13  14  15  16  18  19  20  
 LCS      57       D     5    8   26       C        1   1   2   2   3   3   4   5   6   8  10  12  12  13  14  15  15  16  16  17  
 LCS      58       G     3    8   26       C        1   1   1   2   4   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      59       S     3    8   26       C        1   1   1   2   3   4   6   6   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      60       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      62       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      63       K     4    5    5       C        1   1   1   2   2   2   2   2   2   4   8   8   8  10  10  12  14  14  15  16  
 LCS      64       K     4    5    5       C        1   1   1   2   2   2   2   2   2   4   4   6   7   8  10  11  12  13  14  15  
 LCS      65       N     4    5    5       C        1   1   1   2   2   2   2   5   7   8   8   9   9   9  10  10  11  12  13  14  
 LCS      66       W     4    5    5       H        1   1   1   2   2   2   2   2   2   4   4   6   7   8   8  10  11  12  13  13  
 LCS      67       I     4    5    5       H        1   1   1   2   2   2   2   2   2   4   4   6   7   8  10  10  11  12  13  13  
 LCS      68       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      69       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      70       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      71       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      72       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      73       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      74       G     5    7   19       E        1   1   2   2   3   5   6   7   8   8   8   9   9   9  10  11  12  12  15  20  
 LCS      75       H     5    9   19       C        1   1   2   3   4   5   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      76       L     5   10   19       C        1   2   2   3   4   5   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      77       S     5   10   19       C        1   2   2   3   4   5   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      78       P     5   10   19       C        1   2   2   3   4   5   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      79       T     4   10   19       C        1   2   2   3   4   5   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      80       G     4   10   19       C        1   1   2   3   4   5   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      81       T     5   10   19       C        1   1   2   2   2   3   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      82       T     5   10   19       C        1   2   2   2   3   5   6   7   8   8   8   9   9   9  10  10  11  11  12  13  
 LCS      83       E     5   10   19       C        1   1   2   2   3   5   6   7   8   8   8   9   9   9  10  10  16  16  17  20  
 LCS      84       F     5   10   19       E        1   2   2   3   4   5   6   7   8   8   8  11  14  15  16  18  18  18  19  20  
 LCS      85       W     5   10   19       E        1   1   2   2   4   5   6   7   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS      86       L     3    6   19       C        0   1   1   1   2   2   4   5   5   6   9  12  12  13  15  17  18  18  19  20  
 LCS      87       G     5    6   19       C        1   1   2   2   4   5   6   7   8   8  10  12  12  13  15  16  18  18  19  20  
 LCS      88       N     5    6   19       H        1   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      89       E     5    6   19       H        2   2   2   3   4   5   6   7   8   8  10  12  12  13  14  15  15  16  16  17  
 LCS      90       K     5    6   19       H        1   1   2   2   3   5   6   7   8   8  10  12  12  13  14  15  15  16  18  18  
 LCS      91       I     5    6   19       H        0   2   2   3   4   5   6   7   8   8  10  12  12  13  14  16  18  18  19  20  
 LCS      92       H     3    3   19       H        0   1   1   1   1   2   2   3   4   6   7   9  12  13  15  16  18  18  19  20  
 LCS      93       L     3    3   16       H        0   1   1   1   1   2   2   4   5   6   8  10  12  14  15  17  18  18  19  20  
 LCS      94       I     3    3   16       H        1   1   1   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS      95       S     3    8   16       H        1   2   2   2   4   4   5   6   8   9  10  11  13  16  17  18  18  18  19  20  
 LCS      96       T     6    8   16       H        1   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS      97       Q     6    8   16       H        1   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS      98       S     6    8   16       H        1   1   2   2   4   4   5   6   8   9  10  12  13  15  17  18  18  18  19  20  
 LCS      99       A     6    8   16       H        1   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     100       I     6    8   16       C        1   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     101       P     6    8   13       C        1   1   2   2   3   3   3   5   6   6  10  12  13  15  17  18  18  18  19  20  
 LCS     102       Y     5    8   13       E        1   1   2   2   3   3   4   5   7   9  10  12  13  16  17  18  18  18  19  20  
 LCS     103       A     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     104       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     105       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     106       V     5    6   16       E        1   2   2   2   2   2   3   6   6   8   9  11  14  16  17  18  18  18  19  20  
 LCS     107       E     5    6   16       E        1   2   2   2   2   2   5   6   6   7   9  11  14  16  17  18  18  18  19  20  
 LCS     108       L     5    6   16       E        1   2   2   2   3   4   5   6   6   7   9  11  14  16  17  18  18  18  19  20  
 LCS     109       E     5    6   16       E        1   2   2   2   2   2   5   6   6   7   9  11  14  14  16  18  18  18  19  20  
 LCS     110       D     5    6   16       C        1   2   2   2   2   2   3   6   6   7   8   9  11  14  15  16  16  18  19  20  
 LCS     111       W     4    6   16       C        0   1   1   1   2   4   5   6   6   7   8  10  13  14  15  16  17  18  19  20  
 LCS     112       N     4    5   16       C        1   1   1   3   4   4   4   5   7   8   9  11  14  16  17  18  18  18  19  20  
 LCS     113       G     4    5   16       C        1   1   1   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     114       R     4    5   16       C        1   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     115       T     3    7   16       E        0   2   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     116       S     6    7   16       E        1   1   2   2   3   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     117       T     6    7   16       E        2   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     118       A     6    7   16       E        2   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     119       D     6    7   16       E        2   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     120       Y     6    7   16       E        2   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     121       A     6    7   16       E        2   2   2   2   2   3   3   5   7   9  10  12  14  16  17  18  18  18  19  20  
 LCS     122       M     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     123       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     124       K     5    6   17       E        1   1   2   2   2   2   4   5   6   6   8  12  14  16  17  18  18  18  19  20  
 LCS     125       V     5    6   20       E        1   1   2   2   2   2   4   5   6   7   9  12  14  16  17  18  18  18  19  20  
 LCS     126       G     5    6   20       C        1   1   2   2   2   2   4   5   6   6   7  12  14  16  17  18  18  18  19  20  
 LCS     127       P     5    6   20       C        1   1   2   2   2   2   3   5   6   6   7  11  14  16  17  18  18  18  19  20  
 LCS     128       E     5    6   20       H        1   1   2   2   2   2   2   5   6   7   8  12  14  16  17  18  18  18  19  20  
 LCS     129       A     5    6   20       H        1   1   2   2   4   4   5   6   7   9  10  12  14  16  17  18  18  18  19  20  
 LCS     130       D     5    7   20       H        1   1   2   2   3   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     131       K     5    7   20       C        1   2   2   2   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     132       Y     5    7   20       C        1   1   2   2   2   4   4   4   5   6   9  11  14  15  17  18  18  18  19  20  
 LCS     133       R     5    7   20       C        1   1   2   2   3   4   4   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     134       L     5   10   20       E        1   1   2   3   3   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     135       T     5   10   20       E        1   1   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     136       Y     5   10   20       C        1   1   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     137       A     4   10   20       C        1   1   2   3   4   4   5   6   8   9  10  11  14  16  17  18  18  18  19  20  
 LCS     138       Y     5   10   20       E        1   2   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     139       F     5   10   20       E        1   2   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     140       A     5   10   20       E        1   2   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     141       G     5   10   20       E        1   2   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     142       G     5   10   20       C        1   2   2   3   4   4   5   6   8   9  10  12  14  16  17  18  18  18  19  20  
 LCS     143       D     4   10   20       C        1   1   1   3   4   4   5   6   6   7   9  11  14  16  17  18  18  18  19  20  
 LCS     144       A     4   10   20       C        1   1   1   1   2   4   4   4   6   7   9  11  14  16  17  18  18  18  19  20  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.95 
 
 NUMBER_OF_CA_Tg:  249      NUMBER_OF_CA_Pr:  111      PERCENT_OF_CA:  44.58  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       7       8       9      11      14      16      18      21      24      26      31      36      40      44      46      46      47      49      52  
 GDT PERCENT_OF_CA_Pr    4.50    6.31    7.21    8.11    9.91   12.61   14.41   16.22   18.92   21.62   23.42   27.93   32.43   36.04   39.64   41.44   41.44   42.34   44.14   46.85 
 GDT PERCENT_OF_CA_Tg    2.01    2.81    3.21    3.61    4.42    5.62    6.43    7.23    8.43    9.64   10.44   12.45   14.46   16.06   17.67   18.47   18.47   18.88   19.68   20.88 
 GDT FRAGMENT: Beg-End  39-43   38-44   22-29   38-91   37-91   74-89   37-91   36-91   94-142  85-142  85-142  85-142  84-144  85-144  85-144  84-144  84-144  84-144  52-144  52-144 
 GDT RMS_LOCAL           0.20    0.57    0.75    1.33    1.57    2.20    2.42    2.63    3.46    3.78    3.93    4.50    5.12    5.38    5.59    5.75    5.75    5.88    6.19    6.52 
 GDT RMS_ALL_CA         24.62   25.69   21.44   17.55   17.54   26.12   17.38   17.49   17.02   16.75   16.86   16.67   16.43   16.57   16.66   16.73   16.73   16.71   16.30   16.29 
 
 
 TEST (CA)  RMS =  14.45               (Number of atoms:  111) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.45        111    44.6   249     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1302                            CRMSCA  
     SECONDARY STRUCTURE . .   12.13         50    64.9    77     CRMSCA  
     SURFACE . . . . . . . .   15.68         60    47.6   126     CRMSCA  
     BURIED  . . . . . . . .   12.86         51    41.5   123     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.39        536    44.1  1216     CRMSMC  
     SECONDARY STRUCTURE . .   12.18        245    64.3   381     CRMSMC  
     SURFACE . . . . . . . .   15.50        286    46.5   615     CRMSMC  
     BURIED  . . . . . . . .   13.00        250    41.6   601     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   14.30         92     9.2  1000     CRMSSC  
     RELIABLE SIDE CHAINS  .   14.30         92    10.4   888     CRMSSC  
     SECONDARY STRUCTURE . .   12.54         45    13.8   325     CRMSSC  
     SURFACE . . . . . . . .   15.12         46     9.2   498     CRMSSC  
     BURIED  . . . . . . . .   13.42         46     9.2   502     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   14.39        536    26.9  1995     CRMSALL 
     SECONDARY STRUCTURE . .   12.18        245    38.7   633     CRMSALL 
     SURFACE . . . . . . . .   15.50        286    28.5  1002     CRMSALL 
     BURIED  . . . . . . . .   13.00        250    25.2   993     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.116      1.000       0.500    111    44.6   249     ERRCA  
     SECONDARY STRUCTURE . .   11.416      1.000       0.500     50    64.9    77     ERRCA  
     SURFACE . . . . . . . .   14.378      1.000       0.500     60    47.6   126     ERRCA  
     BURIED  . . . . . . . .   11.632      1.000       0.500     51    41.5   123     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.067      1.000       0.500    536    44.1  1216     ERRMC  
     SECONDARY STRUCTURE . .   11.427      1.000       0.500    245    64.3   381     ERRMC  
     SURFACE . . . . . . . .   14.232      1.000       0.500    286    46.5   615     ERRMC  
     BURIED  . . . . . . . .   11.735      1.000       0.500    250    41.6   601     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.982      1.000       0.500     92     9.2  1000     ERRSC  
     RELIABLE SIDE CHAINS  .   12.982      1.000       0.500     92    10.4   888     ERRSC  
     SECONDARY STRUCTURE . .   11.715      1.000       0.500     45    13.8   325     ERRSC  
     SURFACE . . . . . . . .   13.904      1.000       0.500     46     9.2   498     ERRSC  
     BURIED  . . . . . . . .   12.060      1.000       0.500     46     9.2   502     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.067      1.000       0.500    536    26.9  1995     ERRALL 
     SECONDARY STRUCTURE . .   11.427      1.000       0.500    245    38.7   633     ERRALL 
     SURFACE . . . . . . . .   14.232      1.000       0.500    286    28.5  1002     ERRALL 
     BURIED  . . . . . . . .   11.735      1.000       0.500    250    25.2   993     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         1         8        36     111     249   DISTCA 
CA  (P)      0.00      0.40      0.40      3.21     14.46             249   DISTCA 
CA  (RMS)    0.00      1.22      1.22      4.06      7.20                   DISTCA 
 
ALL (N)         3         6         8        32       184     536    1995   DISTALL 
ALL (P)      0.15      0.30      0.40      1.60      9.22            1995   DISTALL 
ALL (RMS)    0.78      1.13      1.58      3.77      7.39                   DISTALL 
 
 
 
 
END of the results output 
