 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 82 , MODEL 82 , TARGET 182 
#          The number of residues possible to evaluate: 82 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   380     F     E     C             1.00 
 SSP   381     V     E     C             1.00 
 SSP   382     G     E     C             1.00 
 SSP   383     V     E     C             1.00 
 SSP   384     R     E     C             1.00 
 SSP   385     L     C     C             1.00 
 SSP   386     S     C     C             1.00 
 SSP   387     R     C     C             1.00 
 SSP   388     G     C     H             1.00 
 SSP   389     L     H     H             1.00 
 SSP   390     E     H     H             1.00 
 SSP   391     E     H     H             1.00 
 SSP   392     R     H     H             1.00 
 SSP   393     K     H     H             1.00 
 SSP   394     E     H     H             1.00 
 SSP   395     I     H     H             1.00 
 SSP   396     L     H     H             1.00 
 SSP   397     Q     H     H             1.00 
 SSP   398     M     H     H             1.00 
 SSP   399     L     H     H             1.00 
 SSP   400     N     C     H             1.00 
 SSP   401     D     C     H             1.00 
 SSP   402     G     C     C             1.00 
 SSP   403     G     C     C             1.00 
 SSP   404     Y     C     C             1.00 
 SSP   405     S     E     C             1.00 
 SSP   406     V     E     C             1.00 
 SSP   407     V     C     C             1.00 
 SSP   408     D     C     H             1.00 
 SSP   409     L     C     H             1.00 
 SSP   410     S     C     H             1.00 
 SSP   411     D     C     H             1.00 
 SSP   412     D     C     H             1.00 
 SSP   413     E     C     H             1.00 
 SSP   414     M     C     H             1.00 
 SSP   415     A     C     H             1.00 
 SSP   416     K     C     H             1.00 
 SSP   417     L     C     H             1.00 
 SSP  BREAK 
 SSP   419     V     H     H             1.00 
 SSP   420     R     H     H             1.00 
 SSP   421     Y     H     H             1.00 
 SSP   422     M     C     H             1.00 
 SSP   423     V     C     H             1.00 
 SSP   424     G     C     H             1.00 
 SSP   425     G     C     C             1.00 
 SSP   426     R     C     H             1.00 
 SSP   427     P     C     H             1.00 
 SSP   428     S     C     H             1.00 
 SSP   429     H     C     C             1.00 
 SSP   430     P     C     C             1.00 
 SSP   431     L     C     C             1.00 
 SSP  BREAK 
 SSP   433     E     C     C             1.00 
 SSP   434     R     E     E             1.00 
 SSP   435     L     E     E             1.00 
 SSP   436     Y     E     E             1.00 
 SSP   437     S     E     E             1.00 
 SSP   438     F     E     E             1.00 
 SSP   439     E     C     C             1.00 
 SSP   440     F     C     C             1.00 
 SSP   441     P     C     C             1.00 
 SSP   442     E     C     H             1.00 
 SSP   443     S     C     H             1.00 
 SSP   444     P     C     H             1.00 
 SSP   445     G     C     H             1.00 
 SSP   446     A     H     H             1.00 
 SSP   447     L     H     H             1.00 
 SSP   448     L     H     H             1.00 
 SSP   449     R     H     H             1.00 
 SSP   450     F     H     H             1.00 
 SSP   451     L     H     H             1.00 
 SSP   452     N     H     H             1.00 
 SSP   453     T     H     H             1.00 
 SSP   454     L     H     H             1.00 
 SSP   455     G     C     C             1.00 
 SSP   456     T     C     C             1.00 
 SSP   457     Y     C     E             1.00 
 SSP   458     W     C     E             1.00 
 SSP   459     N     C     E             1.00 
 SSP   460     I     C     E             1.00 
 SSP   461     S     C     E             1.00 
 SSP   462     L     E     E             1.00 
 SSP   463     F     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              56.1     100.0     42.9     37.8     45.1 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        51.4      95.7     39.8     35.9     45.1 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            7              71.4               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      82    100.0     56.1 
 
 BIN  0.00 - 1.00      1.00      82    100.0     56.1 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          79              79            79            181 
 ALL CONTACTS (< 8.0A)     337             225           337            805 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       337        193   57.27   85.78   23.98       0     0.00         225       805  |   1-9999 
 RES CONTACTS       231        187   80.95   95.90   41.74       0     0.00         195       448  |   1-4    
 RES CONTACTS        23          5   21.74   45.45   15.15       0     0.00          11        33  |   5-8    
 RES CONTACTS        83          1    1.20    5.26    0.31       0     0.00          19       324  |   9-9999 
 
 
 
# WARNING! TARGET 1362 atoms, MODEL 3692 atoms, 1144 common with TARGET 
           Number of atoms possible to evaluate: 399 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    67.53           53.2   158    44.0   359     ARMSMC  
     SECONDARY STRUCTURE . .    19.62           87.1    62    39.0   159     ARMSMC  
     SURFACE . . . . . . . .    80.00           44.2    95    42.6   223     ARMSMC  
     BURIED  . . . . . . . .    42.24           66.7    63    46.3   136     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   118     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    63     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    51     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    99     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    68     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    49     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    40     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    31     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    18     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    27     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    14     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  380 - 417  38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    33    383 - 415      4.99     7.40 
  LONGEST_CONTINUOUS_SEGMENT    33    384 - 416      4.76     7.60 
  LONGEST_CONTINUOUS_SEGMENT    33    385 - 417      4.75     7.79 
  LCS LOCAL_SCORE:             85.94 
 
 FRAGMENT  2  419 - 431  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    419 - 431      4.98     4.98 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  433 - 463  31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    24    434 - 457      4.97     6.85 
  LCS LOCAL_SCORE:             73.78 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  380 - 417  38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    387 - 406      1.81     8.17 
  LCS LOCAL_SCORE:             40.30 
 
 FRAGMENT  2  419 - 431  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    419 - 425      1.84     7.59 
  LCS LOCAL_SCORE:             46.15 
 
 FRAGMENT  3  433 - 463  31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14    443 - 456      1.81    12.71 
  LCS LOCAL_SCORE:             31.95 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  380 - 417  38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14    388 - 401      0.88     8.42 
  LCS LOCAL_SCORE:             22.09 
 
 FRAGMENT  2  419 - 431  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    419 - 423      0.39     7.45 
  LCS LOCAL_SCORE:             30.18 
 
 FRAGMENT  3  433 - 463  31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    445 - 456      0.86    12.50 
  LCS LOCAL_SCORE:             23.52 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     380       F     6    8   27       E        2   2   3   3   3   5   6   8   9  11  12  13  13  13  13  13  13  14  14  15  
 LCS     381       V     6    8   27       E        2   2   3   3   3   5   7   8   9  11  12  13  13  13  13  14  14  15  15  15  
 LCS     382       G     6    8   32       E        2   2   3   3   3   5   7   8   9  11  12  13  13  13  13  14  14  15  15  15  
 LCS     383       V     6    8   33       E        2   2   3   3   3   6   7   9  10  11  12  13  14  14  17  17  17  18  19  20  
 LCS     384       R     6    8   33       E        2   2   3   3   3   6   7   9  10  11  12  13  15  16  17  17  17  19  19  20  
 LCS     385       L     6   16   33       C        2   2   4   7   9   9  10  11  13  14  15  15  15  16  17  17  17  19  19  20  
 LCS     386       S     3   19   33       C        1   1   2   2   3   4  10  13  14  14  15  15  15  16  17  17  17  18  18  20  
 LCS     387       R     3   20   33       C        1   1   4   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     388       G    14   20   33       C        4   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     389       L    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     390       E    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     391       E    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     392       R    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  19  20  
 LCS     393       K    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     394       E    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     395       I    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  19  20  
 LCS     396       L    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     397       Q    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     398       M    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     399       L    14   20   33       H        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     400       N    14   20   33       C        5   7   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     401       D    14   20   33       C        1   2   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     402       G     4   20   33       C        1   2   2   6   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     403       G     5   20   33       C        2   3   4   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     404       Y     5   20   33       C        1   4   7   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     405       S     5   20   33       E        1   2   3   3   8  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     406       V     5   20   33       E        2   3   6   8   9  12  12  13  14  14  15  15  15  16  17  17  17  18  18  19  
 LCS     407       V     5   17   33       C        1   2   3   4   8   9  12  13  14  14  15  15  15  16  17  17  17  18  19  20  
 LCS     408       D     5   17   33       C        1   2   3   6   9  12  12  13  14  14  15  15  15  16  17  17  17  19  19  20  
 LCS     409       L     4   17   33       C        1   2   3   6   8  12  12  13  14  14  15  15  15  16  17  17  17  19  19  20  
 LCS     410       S     4    7   33       C        1   2   2   3   6   6   7  12  14  14  15  15  15  16  17  17  17  19  19  20  
 LCS     411       D     3    7   33       C        1   1   2   2   4   5   7   7   9  11  15  15  15  16  17  17  17  19  19  20  
 LCS     412       D     6    7   33       C        2   3   3   7   9  11  12  13  14  14  15  15  15  16  17  17  17  19  19  20  
 LCS     413       E     6    7   33       C        2   3   3   4   4   4   5   7  11  13  13  15  15  16  17  17  17  19  19  20  
 LCS     414       M     6    7   33       C        2   3   3   4   4   5   5   6   6   7  12  12  13  14  15  16  17  19  19  20  
 LCS     415       A     6    7   33       C        2   3   3   4   6   6   7   8   9  10  12  12  13  14  15  17  17  19  19  20  
 LCS     416       K     6    7   33       C        2   3   3   4   4   5   5   6   8  12  13  14  15  16  16  17  17  19  19  20  
 LCS     417       L     6    7   33       C        2   3   3   4   4   5   5   6   6   7   8   8  10  10  14  17  17  19  19  20  
 LCS     418       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     419       V     5    7   13       H        2   2   3   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     420       R     5    7   13       H        2   2   3   4   4   5   5   6   6   7   8   9  12  14  15  16  17  19  19  20  
 LCS     421       Y     5    7   13       H        2   2   3   3   4   5   5   6   6   7   8   8   8  10  14  15  17  19  19  20  
 LCS     422       M     5    7   13       C        2   2   3   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     423       V     5    7   13       C        1   2   3   3   4   5   5   6   8  10  12  12  13  14  15  16  17  19  19  20  
 LCS     424       G     4    7   13       C        1   1   2   2   3   4   4   5   6   7   9   9  12  14  15  16  17  19  19  20  
 LCS     425       G     4    7   13       C        0   1   2   3   4   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     426       R     3    4   13       C        1   1   2   3   3   4   6   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     427       P     3    5   13       C        1   1   2   3   3   4   6   7   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     428       S     3    5   13       C        1   1   2   2   2   3   3   4   6   7  12  12  13  14  15  16  17  19  19  20  
 LCS     429       H     3    5   13       C        1   1   2   2   2   2   2   3   3   4   4   5   6   7   7   8   8  13  18  18  
 LCS     430       P     3    5   13       C        1   1   2   2   2   3   3   4   6   6   6   6   7   7   8  12  14  17  18  18  
 LCS     431       L     3    5   13       C        1   1   1   3   3   4   4   5   6   6   6   6   9  12  14  15  16  17  18  19  
 LCS     432       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     433       E     5    8   19       C        2   2   2   3   4   4   4   5   6   7   9  11  13  14  15  16  17  19  19  20  
 LCS     434       R     5    8   24       E        2   2   2   3   4   4   4   5   7  10  12  12  13  14  15  16  17  19  19  20  
 LCS     435       L     5    8   24       E        2   2   2   3   4   5   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     436       Y     5    8   24       E        2   2   2   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     437       S     5    8   24       E        2   2   2   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     438       F     5    8   24       E        2   2   2   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     439       E     5    8   24       C        2   2   2   3   4   4   6   8   9   9  12  12  13  14  15  15  17  18  19  20  
 LCS     440       F     4    8   24       C        1   2   2   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     441       P     4    6   24       C        1   2   3   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     442       E     4    6   24       C        1   2   3   4   6   6   7   8   9  10  12  12  13  14  15  16  17  19  19  20  
 LCS     443       S     4   14   24       C        1   2   2   6   6   6   7   7   7   9  10  11  13  14  15  16  17  19  19  20  
 LCS     444       P     4   14   24       C        1   2   2   2   3   5   7   7   7   8   8   8   8   9  12  13  17  19  19  20  
 LCS     445       G    12   14   24       C        4   6   6   6   6   6   7   7   7   9  10  11  12  13  14  15  17  19  19  20  
 LCS     446       A    12   14   24       H        4   6   6   6   6   6   7   7   7   9  10  11  12  13  14  16  17  19  19  20  
 LCS     447       L    12   14   24       H        4   6   6   6   6   6   7   7   7   9  10  11  12  14  15  16  17  19  19  20  
 LCS     448       L    12   14   24       H        4   6   6   6   6   6   7   7   7   9  10  11  12  13  13  14  15  17  19  20  
 LCS     449       R    12   14   24       H        4   6   6   6   6   6   7   7   7   9  10  11  12  12  13  13  14  15  15  18  
 LCS     450       F    12   14   24       H        4   6   6   6   6   6   7   7   7   9  10  11  12  12  13  13  14  15  15  15  
 LCS     451       L    12   14   24       H        4   6   6   6   6   6   7   7   7   9  10  11  12  12  13  13  14  15  18  19  
 LCS     452       N    12   14   24       H        4   6   6   6   6   6   7   7   7   9  10  11  12  12  13  13  14  15  15  15  
 LCS     453       T    12   14   24       H        4   6   6   6   6   6   7   7   7   8  10  11  12  12  13  13  14  15  15  15  
 LCS     454       L    12   14   24       H        4   6   6   6   6   6   7   7   7   8  10  11  12  12  13  13  14  15  15  15  
 LCS     455       G    12   14   24       C        4   6   6   6   6   6   7   7   7   9  10  11  12  12  13  13  14  15  15  15  
 LCS     456       T    12   14   24       C        1   1   2   6   6   6   7   7   7   9  10  11  12  12  13  13  14  15  15  15  
 LCS     457       Y     4    5   24       C        1   1   2   2   3   4   5   6   7   8   9  11  12  12  13  13  14  15  15  15  
 LCS     458       W     4    5   19       C        1   1   2   2   2   3   3   4   6   7   8   8   9   9  10  13  14  15  15  15  
 LCS     459       N     4    5   19       C        2   2   2   2   3   4   5   6   7   8   9  11  12  12  13  14  15  15  18  18  
 LCS     460       I     4    5   19       C        2   2   2   2   3   4   5   6   7   8   9  11  12  12  13  14  15  16  18  18  
 LCS     461       S     4    5   19       C        2   2   2   2   3   4   5   6   7   8   8   9   9   9  12  13  14  15  15  15  
 LCS     462       L     4    5   19       E        2   2   2   2   3   4   5   6   7   8   8   9  12  12  13  13  14  15  15  15  
 LCS     463       F     3    5   19       E        1   1   1   2   2   3   3   4   7   8   8   9  12  12  13  13  14  15  15  15  
 LCS    BREAK 
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.80 
 
 NUMBER_OF_CA_Tg:  182      NUMBER_OF_CA_Pr:   82      PERCENT_OF_CA:  45.05  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      13      14      16      18      22      23      24      26      27      28      29      29      30      31      32      32      35      36      38  
 GDT PERCENT_OF_CA_Pr   12.20   15.85   17.07   19.51   21.95   26.83   28.05   29.27   31.71   32.93   34.15   35.37   35.37   36.59   37.80   39.02   39.02   42.68   43.90   46.34 
 GDT PERCENT_OF_CA_Tg    5.49    7.14    7.69    8.79    9.89   12.09   12.64   13.19   14.29   14.84   15.38   15.93   15.93   16.48   17.03   17.58   17.58   19.23   19.78   20.88 
 GDT FRAGMENT: Beg-End 391-400 388-400 388-404 388-406 387-406 387-409 387-412 387-412 386-412 385-412 385-412 385-413 385-413 385-416 383-413 384-417 385-417 384-447 384-447 383-447 
 GDT RMS_LOCAL           0.39    0.52    0.79    1.24    1.53    2.02    2.07    2.21    2.52    2.77    2.95    3.19    3.19    3.59    4.20    4.78    4.46    6.24    6.31    6.68 
 GDT RMS_ALL_CA         28.43   28.14   28.47   28.81   29.49   29.98   29.92   30.03   30.21   30.02   30.06   29.93   29.93   29.52   29.19   27.99   28.79   15.91   16.05   15.44 
 
 
 TEST (CA)  RMS =  12.97               (Number of atoms:   82) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   12.97         82    45.1   182     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1582                            CRMSCA  
     SECONDARY STRUCTURE . .   12.60         32    40.0    80     CRMSCA  
     SURFACE . . . . . . . .   13.34         49    43.4   113     CRMSCA  
     BURIED  . . . . . . . .   12.40         33    47.8    69     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   12.94        399    44.8   891     CRMSMC  
     SECONDARY STRUCTURE . .   12.72        159    40.1   397     CRMSMC  
     SURFACE . . . . . . . .   13.26        238    43.4   548     CRMSMC  
     BURIED  . . . . . . . .   12.46        161    46.9   343     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   13.06         71    11.2   634     CRMSSC  
     RELIABLE SIDE CHAINS  .   13.06         71    13.3   534     CRMSSC  
     SECONDARY STRUCTURE . .   12.77         31     9.6   322     CRMSSC  
     SURFACE . . . . . . . .   13.53         42    11.1   379     CRMSSC  
     BURIED  . . . . . . . .   12.35         29    11.4   255     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   12.94        399    29.3  1362     CRMSALL 
     SECONDARY STRUCTURE . .   12.72        159    24.8   642     CRMSALL 
     SURFACE . . . . . . . .   13.26        238    28.6   831     CRMSALL 
     BURIED  . . . . . . . .   12.46        161    30.3   531     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.994      1.000       0.500     82    45.1   182     ERRCA  
     SECONDARY STRUCTURE . .   11.608      1.000       0.500     32    40.0    80     ERRCA  
     SURFACE . . . . . . . .   12.391      1.000       0.500     49    43.4   113     ERRCA  
     BURIED  . . . . . . . .   11.405      1.000       0.500     33    47.8    69     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.983      1.000       0.500    399    44.8   891     ERRMC  
     SECONDARY STRUCTURE . .   11.698      1.000       0.500    159    40.1   397     ERRMC  
     SURFACE . . . . . . . .   12.283      1.000       0.500    238    43.4   548     ERRMC  
     BURIED  . . . . . . . .   11.539      1.000       0.500    161    46.9   343     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.159      1.000       0.500     71    11.2   634     ERRSC  
     RELIABLE SIDE CHAINS  .   12.159      1.000       0.500     71    13.3   534     ERRSC  
     SECONDARY STRUCTURE . .   11.677      1.000       0.500     31     9.6   322     ERRSC  
     SURFACE . . . . . . . .   12.725      1.000       0.500     42    11.1   379     ERRSC  
     BURIED  . . . . . . . .   11.340      1.000       0.500     29    11.4   255     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.983      1.000       0.500    399    29.3  1362     ERRALL 
     SECONDARY STRUCTURE . .   11.698      1.000       0.500    159    24.8   642     ERRALL 
     SURFACE . . . . . . . .   12.283      1.000       0.500    238    28.6   831     ERRALL 
     BURIED  . . . . . . . .   11.539      1.000       0.500    161    30.3   531     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         7        32      82     182   DISTCA 
CA  (P)      0.00      0.00      0.55      3.85     17.58             182   DISTCA 
CA  (RMS)    0.00      0.00      2.82      4.06      7.29                   DISTCA 
 
ALL (N)         0         3         7        30       153     399    1362   DISTALL 
ALL (P)      0.00      0.22      0.51      2.20     11.23            1362   DISTALL 
ALL (RMS)    0.00      1.55      2.16      3.78      7.33                   DISTALL 
 
 
 
 
END of the results output 
