 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 114 , MODEL 114 , TARGET 182 
#          The number of residues possible to evaluate: 114 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   377     A     E     C             1.00 
 SSP   378     C     E     E             1.00 
 SSP   379     I     E     E             1.00 
 SSP   380     F     E     E             1.00 
 SSP   381     V     E     E             1.00 
 SSP   382     G     E     E             1.00 
 SSP   383     V     E     C             1.00 
 SSP   384     R     E     C             1.00 
 SSP   385     L     C     C             1.00 
 SSP   386     S     C     C             1.00 
 SSP   387     R     C     H             1.00 
 SSP   388     G     C     H             1.00 
 SSP   389     L     H     H             1.00 
 SSP   390     E     H     H             1.00 
 SSP   391     E     H     H             1.00 
 SSP   392     R     H     H             1.00 
 SSP   393     K     H     H             1.00 
 SSP   394     E     H     H             1.00 
 SSP   395     I     H     H             1.00 
 SSP   396     L     H     H             1.00 
 SSP   397     Q     H     H             1.00 
 SSP   398     M     H     H             1.00 
 SSP   399     L     H     H             1.00 
 SSP   400     N     C     H             1.00 
 SSP   401     D     C     C             1.00 
 SSP   402     G     C     C             1.00 
 SSP   403     G     C     E             1.00 
 SSP   404     Y     C     E             1.00 
 SSP   405     S     E     E             1.00 
 SSP   406     V     E     E             1.00 
 SSP   407     V     C     E             1.00 
 SSP   408     D     C     C             1.00 
 SSP   409     L     C     C             1.00 
 SSP   410     S     C     C             1.00 
 SSP   411     D     C     C             1.00 
 SSP   412     D     C     C             1.00 
 SSP  BREAK 
 SSP   420     R     H     C             1.00 
 SSP   421     Y     H     C             1.00 
 SSP   422     M     C     E             1.00 
 SSP   423     V     C     E             1.00 
 SSP   424     G     C     C             1.00 
 SSP   425     G     C     C             1.00 
 SSP   426     R     C     C             1.00 
 SSP   427     P     C     C             1.00 
 SSP   428     S     C     C             1.00 
 SSP   429     H     C     H             1.00 
 SSP   430     P     C     H             1.00 
 SSP   431     L     C     H             1.00 
 SSP   432     Q     C     C             1.00 
 SSP   433     E     C     C             1.00 
 SSP   434     R     E     E             1.00 
 SSP   435     L     E     E             1.00 
 SSP   436     Y     E     E             1.00 
 SSP   437     S     E     E             1.00 
 SSP   438     F     E     E             1.00 
 SSP   439     E     C     C             1.00 
 SSP   440     F     C     C             1.00 
 SSP   441     P     C     C             1.00 
 SSP   442     E     C     H             1.00 
 SSP   443     S     C     H             1.00 
 SSP   444     P     C     H             1.00 
 SSP   445     G     C     H             1.00 
 SSP   446     A     H     H             1.00 
 SSP   447     L     H     H             1.00 
 SSP   448     L     H     H             1.00 
 SSP   449     R     H     H             1.00 
 SSP   450     F     H     H             1.00 
 SSP   451     L     H     H             1.00 
 SSP   452     N     H     H             1.00 
 SSP   453     T     H     H             1.00 
 SSP   454     L     H     C             1.00 
 SSP   455     G     C     C             1.00 
 SSP   456     T     C     C             1.00 
 SSP   457     Y     C     C             1.00 
 SSP   458     W     C     E             1.00 
 SSP   459     N     C     E             1.00 
 SSP   460     I     C     E             1.00 
 SSP   461     S     C     E             1.00 
 SSP   462     L     E     E             1.00 
 SSP   463     F     E     C             1.00 
 SSP   464     H     E     C             1.00 
 SSP   465     Y     E     C             1.00 
 SSP   466     R     E     C             1.00 
 SSP   467     S     C     C             1.00 
 SSP   468     H     C     C             1.00 
 SSP   469     G     C     C             1.00 
 SSP   470     T     C     C             1.00 
 SSP   471     D     C     C             1.00 
 SSP   472     Y     C     C             1.00 
 SSP   473     G     C     C             1.00 
 SSP   474     R     C     C             1.00 
 SSP   475     V     E     E             1.00 
 SSP   476     L     E     E             1.00 
 SSP   477     A     E     E             1.00 
 SSP   478     A     E     E             1.00 
 SSP   479     F     E     E             1.00 
 SSP   480     E     C     C             1.00 
 SSP  BREAK 
 SSP   496     G     C     C             1.00 
 SSP   497     Y     C     H             1.00 
 SSP   498     D     C     H             1.00 
 SSP   499     C     E     H             1.00 
 SSP  BREAK 
 SSP   502     E     C     C             1.00 
 SSP   503     T     C     C             1.00 
 SSP   504     N     C     C             1.00 
 SSP   505     N     C     C             1.00 
 SSP   506     P     H     C             1.00 
 SSP   507     A     H     C             1.00 
 SSP   508     F     H     E             1.00 
 SSP   509     R     H     E             1.00 
 SSP   510     F     H     E             1.00 
 SSP   511     F     H     E             1.00 
 SSP   512     L     C     E             1.00 
 SSP   513     A     C     C             1.00 
 SSP   514     G     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              65.8      67.9     69.2     63.3     62.6 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        68.0      69.0     74.3     65.3     62.6 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              70.0              20.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     114    100.0     65.8 
 
 BIN  0.00 - 1.00      1.00     114    100.0     65.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         112             112           118            181 
 ALL CONTACTS (< 8.0A)     490             399           523            805 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       490        225   45.92   56.39   27.95       0     0.00         399       805  |   1-9999 
 RES CONTACTS       255        216   84.71   82.76   48.21       0     0.00         261       448  |   1-4    
 RES CONTACTS        14          1    7.14    5.88    3.03       0     0.00          17        33  |   5-8    
 RES CONTACTS       221          8    3.62    6.61    2.47       0     0.00         121       324  |   9-9999 
 
 
 
# WARNING! TARGET 1362 atoms, MODEL 3566 atoms, 1056 common with TARGET 
           Number of atoms possible to evaluate: 556 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    78.94           51.0   196    54.6   359     ARMSMC  
     SECONDARY STRUCTURE . .    46.05           77.9    86    54.1   159     ARMSMC  
     SURFACE . . . . . . . .    89.42           42.2   116    52.0   223     ARMSMC  
     BURIED  . . . . . . . .    60.59           63.8    80    58.8   136     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   118     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    63     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    51     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    99     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    68     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    49     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    40     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    31     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    18     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    27     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    14     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  377 - 412  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    36    377 - 412      4.52     4.52 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  420 - 480  61   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    26    441 - 466      4.91    16.67 
  LCS LOCAL_SCORE:             34.67 
 
 FRAGMENT  3  496 - 499  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    496 - 499      0.99     0.99 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  502 - 514  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    502 - 512      4.48     6.92 
  LCS LOCAL_SCORE:             80.47 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  377 - 412  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    387 - 402      1.87     6.23 
  LCS LOCAL_SCORE:             30.71 
 
 FRAGMENT  2  420 - 480  61   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14    442 - 455      1.99    15.73 
  LONGEST_CONTINUOUS_SEGMENT    14    443 - 456      1.79    16.04 
  LONGEST_CONTINUOUS_SEGMENT    14    444 - 457      1.97    16.10 
  LCS LOCAL_SCORE:             14.22 
 
 FRAGMENT  3  496 - 499  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    496 - 499      0.99     0.99 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  502 - 514  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    502 - 507      1.80    16.90 
  LCS LOCAL_SCORE:             37.87 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  377 - 412  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    387 - 401      0.86     7.50 
  LCS LOCAL_SCORE:             26.08 
 
 FRAGMENT  2  420 - 480  61   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    445 - 455      0.77    15.78 
  LCS LOCAL_SCORE:              9.22 
 
 FRAGMENT  3  496 - 499  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    496 - 499      0.99     0.99 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  502 - 514  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    503 - 506      0.77    15.91 
  LCS LOCAL_SCORE:             25.44 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     377       A     8    8   36       E        2   3   4   4   4   4  10  13  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     378       C     8    8   36       E        2   3   4   4   4   4   7  11  14  16  19  20  22  24  25  25  26  26  28  29  
 LCS     379       I     8    8   36       E        2   3   4   4   4   4  10  13  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     380       F     8    8   36       E        2   3   4   4   4   4   5   7  10  16  19  20  22  24  25  25  26  26  28  29  
 LCS     381       V     8    8   36       E        2   3   4   5   6   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     382       G     8    8   36       E        2   3   4   5   6   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     383       V     8    8   36       E        2   3   4   4   4   7  11  13  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     384       R     8    8   36       E        1   3   4   4   6   7  11  13  14  17  19  20  22  24  25  25  26  26  28  29  
 LCS     385       L     3    3   36       C        1   1   1   1   2   4   6   9  12  15  17  20  22  24  25  25  26  26  28  28  
 LCS     386       S     3    3   36       C        1   2   3   5   6   7   7   9  12  15  19  20  22  24  25  25  26  26  28  29  
 LCS     387       R    15   16   36       C        1   4   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     388       G    15   16   36       C        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     389       L    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     390       E    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     391       E    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     392       R    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     393       K    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     394       E    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     395       I    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     396       L    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     397       Q    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     398       M    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     399       L    15   16   36       H        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     400       N    15   16   36       C        6   7   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     401       D    15   16   36       C        1   2   7   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     402       G     3   16   36       C        1   1   2   3   6   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     403       G     5   10   36       C        1   2   2   3   6   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     404       Y     5   10   36       C        2   2   2   3   6   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     405       S     5    8   36       E        2   2   2   3   6   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     406       V     5    8   36       E        2   2   2   3   7   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     407       V     5    8   36       C        2   2   2   3   3   4  10  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     408       D     4    8   36       C        1   2   2   3   3   6  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     409       L     4    8   36       C        1   2   2   3   3   4  10  12  14  16  19  20  22  24  25  25  26  26  28  29  
 LCS     410       S     4    5   36       C        1   2   2   5   6   7   7  10  12  15  18  20  22  24  25  25  26  26  28  29  
 LCS     411       D     3    4   36       C        1   1   1   3   4   6   8  11  12  14  14  17  19  22  24  25  26  26  28  29  
 LCS     412       D     0    3   36       C        0   0   1   1   1   3   4   6   8  10  12  14  15  16  18  18  19  21  25  29  
 LCS     413       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     414       M     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     415       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     416       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     417       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     418       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     419       V     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     420       R     0    3   20       H        0   0   1   1   1   2   3   4   5   6   7   8   9   9  13  13  14  15  18  19  
 LCS     421       Y     3    5   20       H        1   1   1   2   2   2   3   3   4   5   7   8   9   9  10  10  13  15  18  19  
 LCS     422       M     3    5   20       C        1   1   1   2   2   2   3   3   4   6   7   8  10  12  13  13  14  15  18  19  
 LCS     423       V     3    5   20       C        1   1   1   1   2   5   6   7   8   9   9   9  15  18  19  20  22  24  26  29  
 LCS     424       G     3    5   20       C        1   1   2   2   4   6   6   7   8   9  12  13  15  18  19  20  22  24  26  29  
 LCS     425       G     3    5   20       C        0   1   2   2   4   6   6   7   8   9   9  12  15  18  19  20  22  24  25  28  
 LCS     426       R     4    5   20       C        1   2   2   2   3   3   6   7   8   9   9   9  10  12  13  13  14  15  18  25  
 LCS     427       P     4    5   20       C        1   2   2   3   4   6   6   7   8   9   9   9  10  12  13  13  22  24  25  26  
 LCS     428       S     4    5   20       C        1   2   2   2   3   4   6   7   8   9   9   9  10  12  13  13  19  24  25  29  
 LCS     429       H     4    5   20       C        1   2   2   2   3   3   4   4   4   5   6   8   9   9   9  10  13  13  14  19  
 LCS     430       P     3    5   20       C        0   1   1   2   3   4   6   7   8   9   9   9   9   9  10  10  13  13  14  14  
 LCS     431       L     3    8   20       C        0   1   2   3   4   6   6   7   8   9   9   9   9   9  10  10  12  12  15  15  
 LCS     432       Q     3    9   20       C        0   1   1   2   3   6   6   7   8   9   9   9   9   9  10  11  13  14  17  19  
 LCS     433       E     7    9   20       C        2   2   3   4   4   6   6   7   8   9   9   9  10  12  13  15  18  19  20  20  
 LCS     434       R     7    9   24       E        2   2   3   4   4   6   6   7   8   9   9  10  12  14  16  18  19  19  20  20  
 LCS     435       L     7    9   24       E        2   3   3   4   4   6   6   7   8   9   9  10  12  14  15  18  19  19  20  20  
 LCS     436       Y     7    9   25       E        2   3   3   4   4   6   6   7   8  10  11  13  15  17  18  18  19  19  20  20  
 LCS     437       S     7    9   25       E        2   3   3   4   4   6   6   7   8  10  11  13  15  17  18  18  19  19  20  20  
 LCS     438       F     7    9   25       E        2   3   3   4   4   6   6   7   8  10  11  13  15  17  18  18  19  19  20  20  
 LCS     439       E     7    9   25       C        2   3   3   4   4   4   6   7   8  10  11  13  15  17  18  18  19  19  20  20  
 LCS     440       F     7    9   25       C        2   3   3   4   4   4   6   7   7   9   9   9  10  12  12  14  18  19  20  20  
 LCS     441       P     3    3   26       C        1   1   2   2   2   2   4   6   7   9  11  13  15  17  18  18  19  19  20  20  
 LCS     442       E     3   14   26       C        1   1   2   3   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     443       S     4   14   26       C        1   2   2   4   6   7   7   8   8  10  11  13  15  17  18  18  19  19  20  20  
 LCS     444       P     4   14   26       C        1   2   2   2   4   7   7   8   8   8   8  12  14  17  18  18  19  19  20  20  
 LCS     445       G    11   14   26       C        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     446       A    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     447       L    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     448       L    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     449       R    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     450       F    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     451       L    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     452       N    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     453       T    11   14   26       H        3   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     454       L    11   14   26       H        2   5   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     455       G    11   14   26       C        1   1   5   6   6   7   7   8   9  10  11  13  15  17  18  18  19  19  20  20  
 LCS     456       T     4   14   26       C        1   2   3   6   6   7   7   8   9  10  11  13  15  17  18  18  19  24  25  26  
 LCS     457       Y     4   14   26       C        1   2   3   5   6   6   7   8   9  10  11  13  15  17  18  18  19  19  20  25  
 LCS     458       W     4    8   26       C        2   2   2   3   3   4   5   6   8  10  10  13  14  17  18  18  19  19  20  20  
 LCS     459       N     4    8   26       C        2   2   3   3   4   6   7   8   9  10  11  13  15  17  18  18  19  23  25  29  
 LCS     460       I     4    8   26       C        2   2   2   3   5   6   7   8   9  10  11  13  15  17  18  18  19  23  26  29  
 LCS     461       S     4    8   26       C        1   2   3   3   5   6   7   8   9  10  11  13  14  17  18  18  19  19  20  23  
 LCS     462       L     4    8   26       E        2   2   2   3   4   6   7   8   9  10  11  13  15  17  18  18  19  19  22  23  
 LCS     463       F     4    8   26       E        1   1   2   3   3   4   5   5   5   6   7  13  14  17  18  18  19  19  22  23  
 LCS     464       H     4    8   26       E        1   1   2   3   3   4   5   5   5   9  11  13  15  17  18  18  19  19  22  23  
 LCS     465       Y     3    8   26       E        1   1   2   3   3   4   5   5   5   5   7   9  10  13  18  18  19  25  26  27  
 LCS     466       R     3    4   26       E        0   1   2   2   2   4   5   5   5   8  10  13  15  17  18  21  24  26  28  29  
 LCS     467       S     3    4   20       C        1   1   2   3   5   7   8  12  14  16  19  20  22  24  25  25  26  26  28  29  
 LCS     468       H     3    4   10       C        1   1   1   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     469       G     3    4   10       C        1   1   1   2   2   3   9   9  12  16  18  20  21  22  22  23  24  25  26  26  
 LCS     470       T     3    4   11       C        1   1   5   8   9   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     471       D     3    4   11       C        1   1   3   5   7   9  12  13  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     472       Y     3    8   11       C        0   1   2   3   3   4   5   5   5   5   6   7   7  10  10  12  22  24  25  25  
 LCS     473       G     3    8   11       C        1   1   2   3   4   4   5   5   5   5   6   8   9  10  21  23  23  24  25  26  
 LCS     474       R     7    8   11       C        2   3   3   3   4   4   5   5   6  11  18  20  21  21  22  23  24  24  25  26  
 LCS     475       V     7    8   11       E        2   3   3   3   4   9  12  14  15  17  19  20  22  24  25  25  26  26  28  29  
 LCS     476       L     7    8   11       E        2   3   3   3   4   4   5   5   6  16  18  20  22  24  25  25  26  26  28  29  
 LCS     477       A     7    8   11       E        2   3   3   3   4   4   5   5   8  10  13  16  22  24  25  25  26  26  28  29  
 LCS     478       A     7    8   11       E        1   3   3   3   4   5   6   7   8  10  11  13  15  17  18  18  19  19  22  23  
 LCS     479       F     7    8   11       E        1   3   3   3   4   4   5   5   6   7   7   8   9  10  11  12  17  19  22  23  
 LCS     480       E     7    8   11       C        1   3   3   3   4   4   5   5   6   7   7   8   9  10  10  12  13  14  15  17  
 LCS     481       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     482       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS    BREAK 
 LCS     496       G     4    4    4       C        1   2   2   5   6   7   7  11  13  14  17  20  22  24  25  25  26  26  28  29  
 LCS     497       Y     4    4    4       C        1   2   3   5   6   7   8  12  13  14  18  20  22  24  25  25  26  26  28  29  
 LCS     498       D     4    4    4       C        1   1   2   2   3   4   6   8   9  12  14  17  19  24  25  25  26  26  28  29  
 LCS     499       C     4    4    4       E        0   1   2   2   2   2   6   7   9  10  12  16  19  21  25  25  26  26  28  29  
 LCS     500       H     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     501       D     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     502       E     3    6   11       C        1   1   2   2   2   2   3   3   4   4   6   6  17  19  22  24  26  26  28  29  
 LCS     503       T     4    6   11       C        1   2   2   2   2   3   4   4   4   4   6   6   6   7   8   9  10  11  11  12  
 LCS     504       N     4    6   11       C        1   2   2   2   2   3   4   4   4   4   6   6   6   7   8   9  10  11  11  12  
 LCS     505       N     4    6   11       C        1   2   2   2   2   3   4   4   4   4  13  16  19  21  25  25  26  26  28  29  
 LCS     506       P     4    6   11       H        1   2   2   2   2   3   4   4   4   4   6   6   8   8   8   9  10  21  28  29  
 LCS     507       A     3    6   11       H        1   1   1   2   2   3   4   4   4   4   7   7   8   8   9   9  23  26  28  28  
 LCS     508       F     3    5   11       H        1   1   1   2   2   3   4   4   4   4   6   6   6   7   8  21  24  25  28  28  
 LCS     509       R     3    3   11       H        0   1   1   1   1   2   2   3   4   4   6   6   6   7   9  10  12  12  12  17  
 LCS     510       F     3    4   11       H        1   1   1   1   2   2   2   3   4   4   5   6   6   8   9  10  12  12  12  12  
 LCS     511       F     3    4   11       H        1   1   1   2   2   2   2   3   4   4   6   6   6   7   7  10  12  12  12  12  
 LCS     512       L     3    4   11       C        1   1   1   2   2   2   2   2   2   2   3   5   6   7   7   7   9  14  15  18  
 LCS     513       A     3    4    8       C        1   1   1   2   2   2   2   2   2   7   7   8   9  10  10  12  13  14  16  18  
 LCS     514       G     3    4    7       C        1   1   1   2   2   2   2   2   2   2   7   9   9  10  10  12  13  14  16  17  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.23 
 
 NUMBER_OF_CA_Tg:  182      NUMBER_OF_CA_Pr:  114      PERCENT_OF_CA:  62.64  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      12      13      14      15      17      18      23      27      29      32      35      38      41      44      46      47      48      49      52      53  
 GDT PERCENT_OF_CA_Pr   10.53   11.40   12.28   13.16   14.91   15.79   20.18   23.68   25.44   28.07   30.70   33.33   35.96   38.60   40.35   41.23   42.11   42.98   45.61   46.49 
 GDT PERCENT_OF_CA_Tg    6.59    7.14    7.69    8.24    9.34    9.89   12.64   14.84   15.93   17.58   19.23   20.88   22.53   24.18   25.27   25.82   26.37   26.92   28.57   29.12 
 GDT FRAGMENT: Beg-End 388-400 388-400 388-401 387-401 387-470 387-475 387-475 381-475 379-475 377-475 377-475 377-497 377-497 377-498 377-505 377-505 377-505 377-507 377-508 377-506 
 GDT RMS_LOCAL           0.31    0.34    0.61    0.86    1.23    1.62    2.56    2.83    3.07    3.39    3.70    4.33    4.55    4.97    5.23    5.31    5.50    5.67    6.05    6.53 
 GDT RMS_ALL_CA         18.36   18.42   18.56   18.77   17.10   16.77   16.52   16.29   16.18   16.12   15.94   15.31   15.22   15.04   14.93   14.88   14.88   14.90   14.94   14.55 
 
 
 TEST (CA)  RMS =  13.59               (Number of atoms:  114) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   13.59        114    62.6   182     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1192                            CRMSCA  
     SECONDARY STRUCTURE . .   13.96         50    62.5    80     CRMSCA  
     SURFACE . . . . . . . .   14.44         69    61.1   113     CRMSCA  
     BURIED  . . . . . . . .   12.17         45    65.2    69     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   13.63        556    62.4   891     CRMSMC  
     SECONDARY STRUCTURE . .   14.10        248    62.5   397     CRMSMC  
     SURFACE . . . . . . . .   14.38        333    60.8   548     CRMSMC  
     BURIED  . . . . . . . .   12.41        223    65.0   343     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   13.81        100    15.8   634     CRMSSC  
     RELIABLE SIDE CHAINS  .   13.81        100    18.7   534     CRMSSC  
     SECONDARY STRUCTURE . .   14.44         48    14.9   322     CRMSSC  
     SURFACE . . . . . . . .   14.79         57    15.0   379     CRMSSC  
     BURIED  . . . . . . . .   12.38         43    16.9   255     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   13.63        556    40.8  1362     CRMSALL 
     SECONDARY STRUCTURE . .   14.10        248    38.6   642     CRMSALL 
     SURFACE . . . . . . . .   14.38        333    40.1   831     CRMSALL 
     BURIED  . . . . . . . .   12.41        223    42.0   531     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.355      1.000       0.500    114    62.6   182     ERRCA  
     SECONDARY STRUCTURE . .   12.552      1.000       0.500     50    62.5    80     ERRCA  
     SURFACE . . . . . . . .   13.106      1.000       0.500     69    61.1   113     ERRCA  
     BURIED  . . . . . . . .   11.204      1.000       0.500     45    65.2    69     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.410      1.000       0.500    556    62.4   891     ERRMC  
     SECONDARY STRUCTURE . .   12.705      1.000       0.500    248    62.5   397     ERRMC  
     SURFACE . . . . . . . .   13.063      1.000       0.500    333    60.8   548     ERRMC  
     BURIED  . . . . . . . .   11.434      1.000       0.500    223    65.0   343     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.710      1.000       0.500    100    15.8   634     ERRSC  
     RELIABLE SIDE CHAINS  .   12.710      1.000       0.500    100    18.7   534     ERRSC  
     SECONDARY STRUCTURE . .   13.157      1.000       0.500     48    14.9   322     ERRSC  
     SURFACE . . . . . . . .   13.571      1.000       0.500     57    15.0   379     ERRSC  
     BURIED  . . . . . . . .   11.570      1.000       0.500     43    16.9   255     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.410      1.000       0.500    556    40.8  1362     ERRALL 
     SECONDARY STRUCTURE . .   12.705      1.000       0.500    248    38.6   642     ERRALL 
     SURFACE . . . . . . . .   13.063      1.000       0.500    333    40.1   831     ERRALL 
     BURIED  . . . . . . . .   11.434      1.000       0.500    223    42.0   531     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         4        12        42     114     182   DISTCA 
CA  (P)      0.00      0.55      2.20      6.59     23.08             182   DISTCA 
CA  (RMS)    0.00      1.93      2.74      3.68      7.45                   DISTCA 
 
ALL (N)         0         5        19        51       194     556    1362   DISTALL 
ALL (P)      0.00      0.37      1.40      3.74     14.24            1362   DISTALL 
ALL (RMS)    0.00      1.68      2.47      3.54      7.40                   DISTALL 
 
 
 
 
END of the results output 
