 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 130 , MODEL 130 , TARGET 182 
#          The number of residues possible to evaluate: 130 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   339     A     E     C             1.00 
 SSP   340     L     E     E             1.00 
 SSP   341     L     E     E             1.00 
 SSP   342     A     E     E             1.00 
 SSP   343     V     E     E             1.00 
 SSP   344     T     E     E             1.00 
 SSP   345     I     E     C             1.00 
 SSP   346     P     C     C             1.00 
 SSP   347     E     C     C             1.00 
 SSP   348     E     C     C             1.00 
 SSP   349     K     C     C             1.00 
 SSP   350     G     C     C             1.00 
 SSP   351     S     C     C             1.00 
 SSP   352     F     C     H             1.00 
 SSP   353     L     H     H             1.00 
 SSP   354     K     H     H             1.00 
 SSP   355     F     H     H             1.00 
 SSP   356     C     H     H             1.00 
 SSP   357     Q     H     H             1.00 
 SSP   358     L     C     H             1.00 
 SSP   359     L     C     H             1.00 
 SSP   360     G     C     C             1.00 
 SSP   361     G     C     C             1.00 
 SSP   362     R     C     C             1.00 
 SSP   363     S     E     E             1.00 
 SSP   364     V     E     E             1.00 
 SSP   365     T     E     E             1.00 
 SSP   366     E     E     E             1.00 
 SSP   367     F     E     E             1.00 
 SSP   368     N     E     C             1.00 
 SSP   369     Y     E     C             1.00 
 SSP   370     R     E     C             1.00 
 SSP   371     F     C     C             1.00 
 SSP   372     A     C     C             1.00 
 SSP   373     D     C     C             1.00 
 SSP   374     A     C     C             1.00 
 SSP   375     K     C     C             1.00 
 SSP   376     N     C     C             1.00 
 SSP   377     A     E     E             1.00 
 SSP   378     C     E     E             1.00 
 SSP   379     I     E     C             1.00 
 SSP   380     F     E     C             1.00 
 SSP   381     V     E     C             1.00 
 SSP   382     G     E     C             1.00 
 SSP  BREAK 
 SSP   385     L     C     C             1.00 
 SSP   386     S     C     C             1.00 
 SSP   387     R     C     C             1.00 
 SSP   388     G     C     C             1.00 
 SSP   389     L     H     H             1.00 
 SSP   390     E     H     H             1.00 
 SSP   391     E     H     H             1.00 
 SSP   392     R     H     H             1.00 
 SSP   393     K     H     H             1.00 
 SSP   394     E     H     H             1.00 
 SSP   395     I     H     H             1.00 
 SSP   396     L     H     H             1.00 
 SSP   397     Q     H     H             1.00 
 SSP   398     M     H     H             1.00 
 SSP   399     L     H     H             1.00 
 SSP   400     N     C     H             1.00 
 SSP   401     D     C     H             1.00 
 SSP   402     G     C     C             1.00 
 SSP   403     G     C     C             1.00 
 SSP   404     Y     C     C             1.00 
 SSP   405     S     E     E             1.00 
 SSP   406     V     E     E             1.00 
 SSP   407     V     C     C             1.00 
 SSP   408     D     C     C             1.00 
 SSP   409     L     C     E             1.00 
 SSP   410     S     C     C             1.00 
 SSP   411     D     C     C             1.00 
 SSP   412     D     C     H             1.00 
 SSP   413     E     C     H             1.00 
 SSP   414     M     C     H             1.00 
 SSP   415     A     C     H             1.00 
 SSP   416     K     C     H             1.00 
 SSP   417     L     C     H             1.00 
 SSP   418     H     C     H             1.00 
 SSP   419     V     H     H             1.00 
 SSP   420     R     H     H             1.00 
 SSP  BREAK 
 SSP   426     R     C     C             1.00 
 SSP   427     P     C     C             1.00 
 SSP   428     S     C     C             1.00 
 SSP   429     H     C     C             1.00 
 SSP  BREAK 
 SSP   435     L     E     E             1.00 
 SSP   436     Y     E     E             1.00 
 SSP   437     S     E     E             1.00 
 SSP   438     F     E     E             1.00 
 SSP   439     E     C     C             1.00 
 SSP   440     F     C     C             1.00 
 SSP   441     P     C     C             1.00 
 SSP   442     E     C     C             1.00 
 SSP   443     S     C     C             1.00 
 SSP   444     P     C     C             1.00 
 SSP   445     G     C     H             1.00 
 SSP   446     A     H     H             1.00 
 SSP   447     L     H     H             1.00 
 SSP   448     L     H     H             1.00 
 SSP   449     R     H     H             1.00 
 SSP   450     F     H     H             1.00 
 SSP   451     L     H     H             1.00 
 SSP   452     N     H     H             1.00 
 SSP   453     T     H     H             1.00 
 SSP   454     L     H     H             1.00 
 SSP   455     G     C     C             1.00 
 SSP   456     T     C     C             1.00 
 SSP   457     Y     C     C             1.00 
 SSP   458     W     C     C             1.00 
 SSP   459     N     C     E             1.00 
 SSP   460     I     C     E             1.00 
 SSP  BREAK 
 SSP   476     L     E     E             1.00 
 SSP   477     A     E     C             1.00 
 SSP   478     A     E     C             1.00 
 SSP   479     F     E     C             1.00 
 SSP   480     E     C     C             1.00 
 SSP   481     L     C     C             1.00 
 SSP   482     G     C     C             1.00 
 SSP  BREAK 
 SSP   496     G     C     C             1.00 
 SSP   497     Y     C     C             1.00 
 SSP   498     D     C     C             1.00 
 SSP   499     C     E     C             1.00 
 SSP   500     H     E     C             1.00 
 SSP   501     D     E     C             1.00 
 SSP   502     E     C     C             1.00 
 SSP   503     T     C     C             1.00 
 SSP   504     N     C     C             1.00 
 SSP   505     N     C     C             1.00 
 SSP   506     P     H     C             1.00 
 SSP   507     A     H     C             1.00 
 SSP   508     F     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              73.8      90.0     55.9     75.8     71.4 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        71.7      83.5     70.6     67.7     71.4 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           12              83.3               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     130    100.0     73.8 
 
 BIN  0.00 - 1.00      1.00     130    100.0     73.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         123             123           137            181 
 ALL CONTACTS (< 8.0A)     485             468           540            805 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       485        266   54.85   56.84   33.04       0     0.00         468       805  |   1-9999 
 RES CONTACTS       285        252   88.42   90.97   56.25       0     0.00         277       448  |   1-4    
 RES CONTACTS        34          5   14.71   22.73   15.15       0     0.00          22        33  |   5-8    
 RES CONTACTS       166          9    5.42    5.33    2.78       0     0.00         169       324  |   9-9999 
 
 
 
# WARNING! TARGET 1362 atoms, MODEL 3511 atoms, 1053 common with TARGET 
           Number of atoms possible to evaluate: 632 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    67.79           52.0   225    62.7   359     ARMSMC  
     SECONDARY STRUCTURE . .    45.96           62.8    94    59.1   159     ARMSMC  
     SURFACE . . . . . . . .    69.27           52.8   125    56.1   223     ARMSMC  
     BURIED  . . . . . . . .    65.90           51.0   100    73.5   136     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   118     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    63     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    51     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    99     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    68     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    49     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    40     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    31     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    18     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    27     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    14     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  339 - 382  44   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22    351 - 372      4.66     9.74 
  LCS LOCAL_SCORE:             42.25 
 
 FRAGMENT  2  385 - 420  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    32    385 - 416      4.85     7.09 
  LCS LOCAL_SCORE:             85.49 
 
 FRAGMENT  3  426 - 429  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    426 - 429      1.10     1.10 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  435 - 460  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    26    435 - 460      3.93     3.93 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  476 - 508  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    496 - 508      3.37    18.08 
  LCS LOCAL_SCORE:             87.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  339 - 382  44   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    351 - 361      1.35    18.38 
  LCS LOCAL_SCORE:             19.06 
 
 FRAGMENT  2  385 - 420  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22    388 - 409      1.81     8.56 
  LCS LOCAL_SCORE:             48.84 
 
 FRAGMENT  3  426 - 429  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    426 - 429      1.10     1.10 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  435 - 460  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    442 - 457      1.99     4.57 
  LCS LOCAL_SCORE:             47.49 
 
 FRAGMENT  5  476 - 508  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    497 - 505      1.87    20.48 
  LCS LOCAL_SCORE:             54.25 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  339 - 382  44   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    351 - 360      0.90    18.95 
  LCS LOCAL_SCORE:             14.31 
 
 FRAGMENT  2  385 - 420  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    388 - 403      0.98     7.59 
  LCS LOCAL_SCORE:             27.78 
 
 FRAGMENT  3  426 - 429  4    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    426 - 428      0.21     2.02 
  LONGEST_CONTINUOUS_SEGMENT     3    427 - 429      0.03     2.22 
  LCS LOCAL_SCORE:             75.00 
 
 FRAGMENT  4  435 - 460  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    445 - 454      0.98     5.01 
  LCS LOCAL_SCORE:             27.22 
 
 FRAGMENT  5  476 - 508  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    497 - 501      0.62    21.08 
  LONGEST_CONTINUOUS_SEGMENT     5    504 - 508      0.46    27.77 
  LCS LOCAL_SCORE:             33.50 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     339       A     4    8   15       E        1   1   2   2   3   4   6   7   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     340       L     7    8   15       E        1   2   3   3   4   4   6   6   8  11  13  14  15  17  18  18  18  19  19  20  
 LCS     341       L     7    8   15       E        1   2   3   3   4   4   6   6   8   9  13  14  15  17  18  18  18  19  19  20  
 LCS     342       A     7    8   15       E        2   2   3   3   4   4   5   6   8  11  13  14  15  17  19  21  23  24  25  26  
 LCS     343       V     7    8   15       E        2   2   3   3   4   4   6   6   8  11  13  14  15  17  18  18  18  23  24  26  
 LCS     344       T     7    8   15       E        2   2   3   3   4   4   6   7   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     345       I     7    8   16       E        2   2   3   3   4   4   6   7   9  11  13  14  15  17  18  18  18  19  19  26  
 LCS     346       P     7    8   16       C        1   2   3   3   3   4   6   7   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     347       E     4    8   19       C        2   2   2   2   4   4   6   7   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     348       E     4    7   19       C        2   2   2   2   4   4   6   7   8   9  13  14  15  17  18  18  18  19  19  20  
 LCS     349       K     4    6   19       C        2   2   2   2   2   3   6   6   6   7   7   7   9  11  13  17  17  18  19  20  
 LCS     350       G     4    6   21       C        2   2   2   2   2   3   3   4   6   6   7   7   7   9  12  13  14  18  19  20  
 LCS     351       S    10   11   22       C        1   3   4   5   5  10  11  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     352       F    10   11   22       C        3   4   4   5   5   6   6   8   9  11  15  15  18  20  21  22  23  24  25  26  
 LCS     353       L    10   11   22       H        3   4   4   5   8  10  10  12  12  13  15  15  18  20  21  22  23  24  25  26  
 LCS     354       K    10   11   22       H        3   4   4   5   5   6   6   7   9  10  12  14  15  17  19  21  23  24  25  26  
 LCS     355       F    10   11   22       H        3   4   4   5   5   6   6   8   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     356       C    10   11   22       H        3   4   4   5   5   6   6   8   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     357       Q    10   11   22       H        3   4   4   5   5   6   6   8   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     358       L    10   11   22       C        2   4   4   5   5   6   6   8   9  10  13  14  15  17  18  18  18  19  19  20  
 LCS     359       L    10   11   22       C        2   4   4   5   5   6   6   8   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     360       G    10   11   22       C        2   4   4   5   5   6   6   7   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     361       G     7   11   22       C        2   3   3   4   5   6   6   8   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     362       R     7    9   22       C        2   3   3   3   4   5   6   8   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     363       S     7    9   22       E        2   3   3   3   4   5   6   8   9  10  13  14  15  17  18  18  18  19  19  20  
 LCS     364       V     7    9   22       E        2   3   3   3   4   5   6   8   9  10  13  14  15  17  18  18  18  19  19  20  
 LCS     365       T     7    9   22       E        2   3   3   3   4   5   6   8   9  10  12  13  15  17  18  18  18  19  19  20  
 LCS     366       E     7    9   22       E        1   3   3   3   4   5   6   8   9  10  10  13  14  17  18  20  23  24  25  25  
 LCS     367       F     4    9   22       E        1   7   7   9  10  10  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     368       N     4    9   22       E        1   2   2   3   4   5   6  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     369       Y     4    7   22       E        1   2   2   2   3   4   4   7   9  10  12  14  15  17  18  18  18  19  19  25  
 LCS     370       R     4    7   22       E        1   1   2   2   3   4   5   7   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     371       F     4    7   22       C        1   1   2   2   3   4   5   5   9  11  13  14  15  17  18  18  18  19  19  20  
 LCS     372       A     3    7   22       C        1   1   2   2   3   4   4   6   7   9  10  13  15  15  16  17  18  19  19  20  
 LCS     373       D     3    7   17       C        1   1   2   2   3   4   4   4   4   5   7   7   9  10  12  13  15  16  17  19  
 LCS     374       A     3    3   13       C        0   1   1   3   4   4   4   4   6   6   6   7   8   9  12  12  12  19  21  22  
 LCS     375       K     3    7   13       C        1   1   1   1   3   4   5   6   6   6   7   8   8  10  12  20  20  24  24  26  
 LCS     376       N     4    7   13       C        1   2   2   3   4   4   5   6   6  14  15  17  18  20  21  22  23  24  25  26  
 LCS     377       A     5    7   13       E        1   2   2   3   4   4   5   6   6   6   7   8  13  20  21  22  23  24  25  26  
 LCS     378       C     5    7   13       E        1   2   2   3   4   4   5   6   6   8  10  17  18  20  21  22  23  24  25  26  
 LCS     379       I     5    7   13       E        1   2   2   3   4   4   5   7  12  14  15  17  18  20  21  22  23  24  25  26  
 LCS     380       F     5    7   13       E        1   2   2   3   4   4   5   6   6   6   7  16  18  20  21  22  23  24  25  26  
 LCS     381       V     5    7   13       E        1   2   2   3   4   4   5   6   6  13  15  17  18  20  21  22  23  24  25  26  
 LCS     382       G     5    7   13       E        1   2   2   3   4   4   5   9  10  13  13  15  18  20  21  22  23  24  25  26  
 LCS     383       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     384       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     385       L     5   19   32       C        1   1   2   2   2   3   7  10  12  13  13  15  17  18  20  22  23  24  25  26  
 LCS     386       S     5   20   32       C        1   1   3   8   9  10  10  12  12  13  15  15  17  19  20  22  23  24  25  26  
 LCS     387       R     5   21   32       C        1   1   2   2   7   9   9  12  12  13  15  15  17  19  20  22  23  24  25  26  
 LCS     388       G    16   22   32       C        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     389       L    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     390       E    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     391       E    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     392       R    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     393       K    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     394       E    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     395       I    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     396       L    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     397       Q    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     398       M    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     399       L    16   22   32       H        6   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     400       N    16   22   32       C        4   7   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     401       D    16   22   32       C        1   3   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     402       G    16   22   32       C        1   2   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     403       G    16   22   32       C        1   3   7   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     404       Y     5   22   32       C        2   3   3   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     405       S     5   22   32       E        2   3   8   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     406       V     5   22   32       E        2   3   3   9  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     407       V     5   22   32       C        2   3   5   7  10  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     408       D     3   22   32       C        1   1   1   2   9  11  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     409       L     3   22   32       C        1   1   1   2   8  10  12  12  13  14  15  17  18  20  21  22  23  24  25  26  
 LCS     410       S     3    4   32       C        1   1   1   2   3   3   7   8  13  14  14  15  16  19  20  22  23  24  25  26  
 LCS     411       D     3    4   32       C        1   1   1   2   3   8  12  12  13  14  15  17  18  19  21  22  23  24  25  26  
 LCS     412       D     7    9   32       C        2   3   3   3   4   4   4   5   6  12  15  17  18  20  21  22  23  24  25  26  
 LCS     413       E     7    9   32       C        2   3   3   3   4   4   8  10  10  14  15  16  18  20  21  22  23  24  25  26  
 LCS     414       M     7    9   32       C        2   3   3   3   4   4   7   8   8   8   8  13  14  14  21  21  23  24  25  26  
 LCS     415       A     7    9   32       C        2   3   3   3   4   6   8  10  10  13  13  15  18  20  21  21  23  24  25  26  
 LCS     416       K     7    9   32       C        2   3   3   3   5   7   8   9  10  13  13  14  15  17  19  21  23  23  24  25  
 LCS     417       L     7    9   21       C        2   3   3   3   4   4   5   6   6   8   8   9  14  16  19  21  23  23  24  25  
 LCS     418       H     7    9   21       C        1   2   3   3   4   4   4   6   6   7   7   8   9  10  17  21  23  23  24  25  
 LCS     419       V     4    9   21       H        1   3   3   3   4   4   7   8   8   8  11  14  15  17  19  21  23  23  24  25  
 LCS     420       R     4    9   21       H        1   1   2   2   3   4   6   8   8   8   8   9  10  11  12  14  17  23  24  25  
 LCS     421       Y     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     422       M     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     423       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     424       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     425       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     426       R     3    4    4       C        1   1   2   2   2   2   2   2   2   4   4   4   4   6   8   9  10  12  14  15  
 LCS     427       P     3    4    4       C        1   1   2   2   2   2   2   2   2   4   4   4   4   4   8   9   9  12  12  14  
 LCS     428       S     3    4    4       C        1   1   2   2   2   2   2   2   4   4   4   4   4   4   5   6   7   8  10  11  
 LCS     429       H     3    4    4       C        1   1   2   2   2   2   2   2   2   2   2   2   2   2   3   5   6   7   9   9  
 LCS     430       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     431       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     432       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     433       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     434       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     435       L     5    5   26       E        2   2   2   3   4   6   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     436       Y     5    5   26       E        2   2   2   3   3   6   7   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     437       S     5    5   26       E        2   2   2   3   3   4   7   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     438       F     5    5   26       E        2   2   2   3   3   3   7   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     439       E     5    5   26       C        1   2   2   3   7   8   8   9  10  11  13  13  13  13  14  14  14  14  20  24  
 LCS     440       F     5    6   26       C        1   2   2   3   3   3   3   3   9  10  12  14  15  17  19  21  23  23  24  25  
 LCS     441       P     5    6   26       C        1   2   3   3   4   4   5   8   9  11  13  14  15  17  19  21  23  23  24  25  
 LCS     442       E     5   16   26       C        1   2   2   3   7   8   8   9  10  11  13  14  15  16  19  21  23  23  24  25  
 LCS     443       S     5   16   26       C        1   2   3   6   7   8   8   9  10  11  13  13  13  13  14  14  16  19  20  23  
 LCS     444       P     5   16   26       C        1   2   2   2   4   7   8   9   9  11  13  13  13  13  14  14  14  14  15  17  
 LCS     445       G    10   16   26       C        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     446       A    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     447       L    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     448       L    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     449       R    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     450       F    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     451       L    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     452       N    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     453       T    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     454       L    10   16   26       H        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     455       G     9   16   26       C        2   3   6   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     456       T     8   16   26       C        2   2   5   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     457       Y     8   16   26       C        1   3   4   7   7   8   8   9  10  11  13  13  13  13  14  14  14  14  15  17  
 LCS     458       W     3   14   26       C        1   1   1   2   3   3   4   6   8  11  13  13  13  13  14  14  14  14  15  17  
 LCS     459       N     3    7   26       C        1   1   2   2   4   6   7   7   9  11  13  13  13  13  14  14  14  14  15  17  
 LCS     460       I     3    7   26       C        0   1   2   2   3   4   6   7   8   8  13  13  13  13  14  14  14  14  15  17  
 LCS     461       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     462       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     463       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     464       H     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     465       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     466       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     467       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     468       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     469       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     470       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     471       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     472       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     473       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     474       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     475       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     476       L     0    3    8       E        0   2   2   3   3   4   6   7   8  10  11  11  12  13  14  19  23  23  24  25  
 LCS     477       A     0    3    9       E        0   0   0   3   3   4   6   7   7   8  11  14  15  17  18  21  23  23  24  25  
 LCS     478       A     4    5    9       E        1   2   2   3   3   3   4   5   6   7   7  14  15  17  19  21  23  23  24  25  
 LCS     479       F     4    5    9       E        1   2   2   2   2   3   4   5   6   7   7   7   8  17  18  20  23  23  24  25  
 LCS     480       E     4    6    9       C        1   2   2   2   2   3   3   3   4   4   4   4   8   8   8   9  12  13  14  15  
 LCS     481       L     4    6    9       C        1   2   2   2   2   3   3   3   4   4   4   4   4   4   4   5   6  12  13  15  
 LCS     482       G     4    6    9       C        1   1   2   2   2   3   3   3   4   4   4   4   4   4   4   5   6   7   9   9  
 LCS    BREAK 
 LCS     496       G     4    6   13       C        1   1   2   2   2   3   3   3   4   4   7   7   7   7   7   7   7   7   7  21  
 LCS     497       Y     5    9   13       C        2   2   3   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     498       D     5    9   13       C        2   2   3   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     499       C     5    9   13       E        2   2   3   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     500       H     5    9   13       E        2   2   3   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     501       D     5    9   13       E        1   2   3   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     502       E     4    9   13       C        1   2   3   3   3   4   4   4   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     503       T     4    9   13       C        1   2   2   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     504       N     5    9   13       C        2   2   3   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     505       N     5    9   13       C        2   2   2   3   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     506       P     5    6   13       H        2   2   2   2   3   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     507       A     5    6   13       H        2   2   2   4   4   4   4   5   6   6   7   7   7   7   7   7   7   7   7   7  
 LCS     508       F     5    6   13       H        2   2   2   2   3   3   3   4   4   5   7   7   7   7   7   7   7   7   7   7  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.76 
 
 NUMBER_OF_CA_Tg:  182      NUMBER_OF_CA_Pr:  130      PERCENT_OF_CA:  71.43  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      11      13      15      18      20      21      23      23      24      26      28      31      33      37      39      41      43      45      46      48  
 GDT PERCENT_OF_CA_Pr    8.46   10.00   11.54   13.85   15.38   16.15   17.69   17.69   18.46   20.00   21.54   23.85   25.38   28.46   30.00   31.54   33.08   34.62   35.38   36.92 
 GDT PERCENT_OF_CA_Tg    6.04    7.14    8.24    9.89   10.99   11.54   12.64   12.64   13.19   14.29   15.38   17.03   18.13   20.33   21.43   22.53   23.63   24.73   25.27   26.37 
 GDT FRAGMENT: Beg-End 388-399 388-400 388-402 367-405 388-407 388-408 367-409 367-409 367-411 351-411 351-411 351-412 351-413 351-415 351-415 351-413 351-415 342-415 342-415 342-415 
 GDT RMS_LOCAL           0.31    0.42    0.84    1.06    1.48    1.64    1.92    1.92    2.12    2.58    2.95    3.51    3.81    4.33    4.55    4.86    5.11    5.39    5.51    5.79 
 GDT RMS_ALL_CA         21.15   21.52   22.07   21.83   24.51   24.71   23.43   23.43   23.74   23.98   23.94   23.74   23.57   22.29   22.47   22.42   21.90   22.06   21.97   22.56 
 
 
 TEST (CA)  RMS =  16.83               (Number of atoms:  130) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   16.83        130    71.4   182     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1295                            CRMSCA  
     SECONDARY STRUCTURE . .   16.37         55    68.8    80     CRMSCA  
     SURFACE . . . . . . . .   18.15         74    65.5   113     CRMSCA  
     BURIED  . . . . . . . .   14.92         56    81.2    69     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   16.84        632    70.9   891     CRMSMC  
     SECONDARY STRUCTURE . .   16.45        271    68.3   397     CRMSMC  
     SURFACE . . . . . . . .   18.06        358    65.3   548     CRMSMC  
     BURIED  . . . . . . . .   15.10        274    79.9   343     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   16.93        112    17.7   634     CRMSSC  
     RELIABLE SIDE CHAINS  .   16.93        112    21.0   534     CRMSSC  
     SECONDARY STRUCTURE . .   16.30         51    15.8   322     CRMSSC  
     SURFACE . . . . . . . .   18.42         62    16.4   379     CRMSSC  
     BURIED  . . . . . . . .   14.89         50    19.6   255     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.84        632    46.4  1362     CRMSALL 
     SECONDARY STRUCTURE . .   16.45        271    42.2   642     CRMSALL 
     SURFACE . . . . . . . .   18.06        358    43.1   831     CRMSALL 
     BURIED  . . . . . . . .   15.10        274    51.6   531     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.192      1.000       0.500    130    71.4   182     ERRCA  
     SECONDARY STRUCTURE . .   14.785      1.000       0.500     55    68.8    80     ERRCA  
     SURFACE . . . . . . . .   16.392      1.000       0.500     74    65.5   113     ERRCA  
     BURIED  . . . . . . . .   13.606      1.000       0.500     56    81.2    69     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.225      1.000       0.500    632    70.9   891     ERRMC  
     SECONDARY STRUCTURE . .   14.882      1.000       0.500    271    68.3   397     ERRMC  
     SURFACE . . . . . . . .   16.328      1.000       0.500    358    65.3   548     ERRMC  
     BURIED  . . . . . . . .   13.783      1.000       0.500    274    79.9   343     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.370      1.000       0.500    112    17.7   634     ERRSC  
     RELIABLE SIDE CHAINS  .   15.370      1.000       0.500    112    21.0   534     ERRSC  
     SECONDARY STRUCTURE . .   14.798      1.000       0.500     51    15.8   322     ERRSC  
     SURFACE . . . . . . . .   16.747      1.000       0.500     62    16.4   379     ERRSC  
     BURIED  . . . . . . . .   13.661      1.000       0.500     50    19.6   255     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.225      1.000       0.500    632    46.4  1362     ERRALL 
     SECONDARY STRUCTURE . .   14.882      1.000       0.500    271    42.2   642     ERRALL 
     SURFACE . . . . . . . .   16.328      1.000       0.500    358    43.1   831     ERRALL 
     BURIED  . . . . . . . .   13.783      1.000       0.500    274    51.6   531     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         3         5        33     130     182   DISTCA 
CA  (P)      0.00      0.55      1.65      2.75     18.13             182   DISTCA 
CA  (RMS)    0.00      1.05      2.26      3.37      7.06                   DISTCA 
 
ALL (N)         0         1         8        29       179     632    1362   DISTALL 
ALL (P)      0.00      0.07      0.59      2.13     13.14            1362   DISTALL 
ALL (RMS)    0.00      1.05      2.53      3.91      7.43                   DISTALL 
 
 
 
 
END of the results output 
