 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 117 , MODEL 117 , TARGET 182 
#          The number of residues possible to evaluate: 117 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   320     N     C     C             1.00 
 SSP   321     F     C     H             1.00 
 SSP  BREAK 
 SSP   323     G     H     H             1.00 
 SSP   324     L     H     H             1.00 
 SSP   325     R     H     H             1.00 
 SSP   326     Y     H     H             1.00 
 SSP   327     V     H     H             1.00 
 SSP   328     S     H     H             1.00 
 SSP   329     E     H     H             1.00 
 SSP   330     R     H     H             1.00 
 SSP   331     C     H     H             1.00 
 SSP   332     E     H     H             1.00 
 SSP   333     L     H     C             1.00 
 SSP   334     G     H     C             1.00 
 SSP  BREAK 
 SSP   337     R     C     C             1.00 
 SSP   338     E     E     C             1.00 
 SSP   339     A     E     C             1.00 
 SSP   340     L     E     C             1.00 
 SSP   341     L     E     E             1.00 
 SSP   342     A     E     E             1.00 
 SSP   343     V     E     E             1.00 
 SSP   344     T     E     E             1.00 
 SSP   345     I     E     C             1.00 
 SSP   346     P     C     C             1.00 
 SSP   347     E     C     C             1.00 
 SSP   348     E     C     C             1.00 
 SSP   349     K     C     H             1.00 
 SSP   350     G     C     H             1.00 
 SSP   351     S     C     H             1.00 
 SSP   352     F     C     H             1.00 
 SSP   353     L     H     H             1.00 
 SSP   354     K     H     H             1.00 
 SSP   355     F     H     H             1.00 
 SSP   356     C     H     H             1.00 
 SSP   357     Q     H     H             1.00 
 SSP   358     L     C     H             1.00 
 SSP   359     L     C     H             1.00 
 SSP  BREAK 
 SSP   363     S     E     H             1.00 
 SSP   364     V     E     C             1.00 
 SSP   365     T     E     C             1.00 
 SSP   366     E     E     H             1.00 
 SSP   367     F     E     H             1.00 
 SSP   368     N     E     H             1.00 
 SSP  BREAK 
 SSP   375     K     C     C             1.00 
 SSP   376     N     C     C             1.00 
 SSP   377     A     E     C             1.00 
 SSP   378     C     E     E             1.00 
 SSP   379     I     E     E             1.00 
 SSP   380     F     E     E             1.00 
 SSP   381     V     E     E             1.00 
 SSP  BREAK 
 SSP   388     G     C     C             1.00 
 SSP   389     L     H     C             1.00 
 SSP   390     E     H     C             1.00 
 SSP   391     E     H     H             1.00 
 SSP   392     R     H     H             1.00 
 SSP   393     K     H     H             1.00 
 SSP   394     E     H     H             1.00 
 SSP   395     I     H     H             1.00 
 SSP   396     L     H     H             1.00 
 SSP   397     Q     H     H             1.00 
 SSP   398     M     H     H             1.00 
 SSP   399     L     H     H             1.00 
 SSP   400     N     C     H             1.00 
 SSP   401     D     C     C             1.00 
 SSP   402     G     C     C             1.00 
 SSP   403     G     C     C             1.00 
 SSP   404     Y     C     C             1.00 
 SSP   405     S     E     C             1.00 
 SSP   406     V     E     C             1.00 
 SSP   407     V     C     C             1.00 
 SSP   408     D     C     C             1.00 
 SSP   409     L     C     C             1.00 
 SSP   410     S     C     C             1.00 
 SSP   411     D     C     C             1.00 
 SSP   412     D     C     H             1.00 
 SSP   413     E     C     H             1.00 
 SSP   414     M     C     H             1.00 
 SSP   415     A     C     H             1.00 
 SSP   416     K     C     H             1.00 
 SSP   417     L     C     H             1.00 
 SSP   418     H     C     H             1.00 
 SSP   419     V     H     H             1.00 
 SSP   420     R     H     H             1.00 
 SSP   421     Y     H     H             1.00 
 SSP   422     M     C     H             1.00 
 SSP   423     V     C     C             1.00 
 SSP   424     G     C     C             1.00 
 SSP   425     G     C     C             1.00 
 SSP   426     R     C     C             1.00 
 SSP   427     P     C     C             1.00 
 SSP   428     S     C     C             1.00 
 SSP   429     H     C     C             1.00 
 SSP   430     P     C     C             1.00 
 SSP   431     L     C     C             1.00 
 SSP   432     Q     C     C             1.00 
 SSP   433     E     C     C             1.00 
 SSP   434     R     E     C             1.00 
 SSP   435     L     E     C             1.00 
 SSP   436     Y     E     C             1.00 
 SSP   437     S     E     C             1.00 
 SSP   438     F     E     C             1.00 
 SSP   439     E     C     C             1.00 
 SSP   440     F     C     C             1.00 
 SSP   441     P     C     C             1.00 
 SSP   442     E     C     C             1.00 
 SSP   443     S     C     H             1.00 
 SSP   444     P     C     H             1.00 
 SSP   445     G     C     H             1.00 
 SSP   446     A     H     H             1.00 
 SSP   447     L     H     H             1.00 
 SSP   448     L     H     H             1.00 
 SSP   449     R     H     H             1.00 
 SSP   450     F     H     H             1.00 
 SSP   451     L     H     H             1.00 
 SSP   452     N     H     H             1.00 
 SSP   453     T     H     H             1.00 
 SSP   454     L     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              64.1      87.5     30.8     62.7     64.3 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        65.2      90.7     42.3     56.8     64.3 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              70.0              10.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     117    100.0     64.1 
 
 BIN  0.00 - 1.00      1.00     117    100.0     64.1 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         108             108           400            181 
 ALL CONTACTS (< 8.0A)     417             354          1822            805 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       417        236   56.59   66.67   29.32       0     0.00         354       805  |   1-9999 
 RES CONTACTS       261        228   87.36   91.57   50.89       0     0.00         249       448  |   1-4    
 RES CONTACTS        31          1    3.23    9.09    3.03       0     0.00          11        33  |   5-8    
 RES CONTACTS       125          7    5.60    7.45    2.16       0     0.00          94       324  |   9-9999 
 
 
 
# WARNING! TARGET 1362 atoms, MODEL 2801 atoms, 1060 common with TARGET 
           Number of atoms possible to evaluate: 567 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    66.90           55.4   222    61.8   359     ARMSMC  
     SECONDARY STRUCTURE . .    56.49           68.9   106    66.7   159     ARMSMC  
     SURFACE . . . . . . . .    65.88           53.4   133    59.6   223     ARMSMC  
     BURIED  . . . . . . . .    68.41           58.4    89    65.4   136     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   118     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    63     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    51     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    99     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    68     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    49     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    40     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    31     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    18     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    27     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    14     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  323 - 334  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    323 - 334      0.44     0.44 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  337 - 359  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23    337 - 359      3.59     3.59 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  363 - 368  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    363 - 368      3.31     3.31 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  375 - 381  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    375 - 381      1.39     1.39 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  388 - 454  67   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    25    388 - 412      4.55    21.78 
  LONGEST_CONTINUOUS_SEGMENT    25    389 - 413      4.93    20.78 
  LCS LOCAL_SCORE:             34.80 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  323 - 334  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    323 - 334      0.44     0.44 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  337 - 359  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    350 - 359      1.49     5.06 
  LCS LOCAL_SCORE:             35.54 
 
 FRAGMENT  3  363 - 368  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    363 - 366      1.69     6.25 
  LONGEST_CONTINUOUS_SEGMENT     4    364 - 367      1.65     3.68 
  LCS LOCAL_SCORE:             63.89 
 
 FRAGMENT  4  375 - 381  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    375 - 381      1.39     1.39 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  388 - 454  67   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14    441 - 454      1.68    33.68 
  LCS LOCAL_SCORE:             15.71 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  323 - 334  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    323 - 334      0.44     0.44 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  337 - 359  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    352 - 359      0.52     4.53 
  LCS LOCAL_SCORE:             27.03 
 
 FRAGMENT  3  363 - 368  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    363 - 365      0.57     8.08 
  LONGEST_CONTINUOUS_SEGMENT     3    364 - 366      0.68     5.76 
  LONGEST_CONTINUOUS_SEGMENT     3    365 - 367      0.91     4.99 
  LONGEST_CONTINUOUS_SEGMENT     3    366 - 368      0.42     8.95 
  LCS LOCAL_SCORE:             50.00 
 
 FRAGMENT  4  375 - 381  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    376 - 380      0.94     1.99 
  LONGEST_CONTINUOUS_SEGMENT     5    377 - 381      0.72     1.65 
  LCS LOCAL_SCORE:             67.35 
 
 FRAGMENT  5  388 - 454  67   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    390 - 401      0.86    27.00 
  LCS LOCAL_SCORE:             10.72 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     320       N     0    0    0       C        0   1   1   1   2   2   6   7   7   7   7   8   8   8   8   8   8   8   9   9  
 LCS     321       F     0    0    0       C        0   1   1   1   2   2   2   6   7   7   7   8   8   8   8   8   8   8   9   9  
 LCS     322       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     323       G    12   12   12       H        3   6   6   6   6   6   6   7   7   7   7   7   8   8   8   8   8   8   9   9  
 LCS     324       L    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   8   8   8   8   9   9  
 LCS     325       R    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   8   8   8   8   9   9  
 LCS     326       Y    12   12   12       H        4   6   6   6   6   6   6   7   7   7   7   8   8   8   8   8   8   8   9   9  
 LCS     327       V    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   8   8   8   8   9   9  
 LCS     328       S    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   8   8   8   8  10  11  
 LCS     329       E    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   9  10  11  12  13  13  
 LCS     330       R    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   8  10  11  12  13  13  
 LCS     331       C    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   9  10  11  12  13  13  
 LCS     332       E    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   9  10  11  12  13  13  
 LCS     333       L    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   9  10  11  12  13  13  
 LCS     334       G    12   12   12       H        5   6   6   6   6   6   6   7   7   7   7   8   8   8   9  10  11  12  13  13  
 LCS     335       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     336       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     337       R     5    7   23       C        0   2   2   2   3   4   5   7   8  12  13  15  17  18  18  19  20  20  21  22  
 LCS     338       E     5    7   23       E        0   2   2   3   3   5   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     339       A     5    7   23       E        1   2   2   3   3   4   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     340       L     5    7   23       E        1   2   2   3   4   7   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     341       L     6    7   23       E        1   2   4   6   7   7   9  11  12  13  14  15  17  18  18  19  20  20  21  23  
 LCS     342       A     6    7   23       E        1   2   3   3   3   4   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     343       V     6    7   23       E        1   2   3   6   6   7   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     344       T     6    7   23       E        2   3   4   6   7   7   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     345       I     6    7   23       E        2   2   3   3   3   4   5   7   8   9  12  15  17  18  18  19  20  20  21  22  
 LCS     346       P     6    7   23       C        2   2   3   3   4   5   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     347       E     4    6   23       C        2   2   2   5   7   7   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     348       E     4    6   23       C        2   2   2   5   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     349       K     4    6   23       C        1   1   2   2   3   4   6   9  11  12  14  15  17  18  18  19  20  20  21  22  
 LCS     350       G     4   10   23       C        1   1   2   5   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     351       S     7   10   23       C        1   1   3   3   5   5   8  10  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     352       F     8   10   23       C        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     353       L     8   10   23       H        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     354       K     8   10   23       H        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     355       F     8   10   23       H        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     356       C     8   10   23       H        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     357       Q     8   10   23       H        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     358       L     8   10   23       C        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  23  
 LCS     359       L     8   10   23       C        3   4   4   6   7   8   9  11  12  13  14  15  17  18  18  19  20  20  21  23  
 LCS     360       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     361       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     362       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     363       S     3    4    6       E        0   1   1   1   2   2   2   3   3   3  14  15  15  16  18  19  20  20  21  22  
 LCS     364       V     3    4    6       E        0   1   1   1   2   2   2   3   3   5   8  15  15  16  16  17  17  19  20  22  
 LCS     365       T     3    4    6       E        0   1   1   1   2   2   6   7   8   8   8   9   9  16  16  17  17  18  18  20  
 LCS     366       E     3    4    6       E        1   1   1   1   2   2   2   3   3   5   6   6   8   8   8  11  13  18  18  18  
 LCS     367       F     3    4    6       E        1   1   1   1   2   2   2   3   3   4   6   6   8   9   9   9  10  13  14  15  
 LCS     368       N     3    3    6       E        1   1   1   1   1   2   2   2   2   8   8   8   8   9   9  11  13  13  14  14  
 LCS     369       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     370       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     371       F     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     372       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     373       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     374       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     375       K     3    7    7       C        1   1   2   3   3   3   3   6   8   8   9   9  10  12  13  14  15  16  16  16  
 LCS     376       N     5    7    7       C        1   2   2   3   3   6   7   8   9  10  11  11  12  13  13  14  15  16  17  18  
 LCS     377       A     5    7    7       E        1   2   2   3   3   6   7   8   9  10  11  11  12  13  13  14  15  16  17  18  
 LCS     378       C     5    7    7       E        2   2   2   3   3   5   7   8   9  10  11  11  12  13  14  15  17  18  18  19  
 LCS     379       I     5    7    7       E        2   2   2   3   3   4   8  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     380       F     5    7    7       E        2   2   2   3   3   3   3   8  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     381       V     5    7    7       E        2   2   2   3   3   3   3   4   4   4   7   8  10  12  13  18  19  20  21  22  
 LCS     382       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     383       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     384       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     385       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     386       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     387       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     388       G     3    3   25       C        0   1   3   3   4   4   6   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     389       L     3   13   25       H        0   1   1   4   4   6   6   7   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     390       E    12   13   25       H        5   6   6   6   6   6   7   8   9  10  12  13  14  15  15  17  18  19  20  23  
 LCS     391       E    12   13   25       H        5   6   6   6   6   6   7   8   9  10  11  13  14  15  15  17  18  19  20  23  
 LCS     392       R    12   13   25       H        4   6   6   6   6   6   8   8   9  10  12  13  14  15  15  17  18  19  20  23  
 LCS     393       K    12   13   25       H        5   6   6   6   6   6   8   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     394       E    12   13   25       H        5   6   6   6   6   6   8   8   9  10  12  13  14  15  15  17  18  19  20  23  
 LCS     395       I    12   13   25       H        5   6   6   6   6   6   8   8   9  10  12  13  14  14  15  17  18  19  20  22  
 LCS     396       L    12   13   25       H        5   6   6   6   6   6   8   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     397       Q    12   13   25       H        5   6   6   6   6   6   8   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     398       M    12   13   25       H        5   6   6   6   6   6   8   8   9  11  12  13  14  15  15  17  18  19  20  22  
 LCS     399       L    12   13   25       H        5   6   6   6   6   6   7   7   9  11  12  13  14  14  15  17  18  19  20  21  
 LCS     400       N    12   13   25       C        5   6   6   6   6   6   8   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     401       D    12   13   25       C        2   2   3   6   6   6   8   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     402       G     4   13   25       C        2   2   3   4   5   6   8   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     403       G     4    7   25       C        2   2   2   3   3   5   7   9   9  10  11  12  13  15  15  17  18  19  20  23  
 LCS     404       Y     6    7   25       C        2   2   3   3   3   4   6   7   8  10  11  12  13  15  15  17  18  19  20  23  
 LCS     405       S     6    7   25       E        2   2   3   3   3   4   6   8   9  10  11  12  13  15  15  17  18  19  20  23  
 LCS     406       V     6    7   25       E        2   2   3   3   3   7   8  10  12  13  14  15  15  16  18  19  20  20  21  23  
 LCS     407       V     6    7   25       C        2   2   4   6   6   8   9  11  12  13  14  15  17  18  18  19  20  20  21  22  
 LCS     408       D     6    7   25       C        2   3   4   6   6   8   9  10  11  12  13  15  17  18  18  19  20  20  21  22  
 LCS     409       L     6    7   25       C        1   1   3   3   3   4   6   8   9  10  11  12  13  13  17  19  20  20  21  22  
 LCS     410       S     3    6   25       C        2   2   2   3   5   7   7   8   9  10  11  12  13  13  13  13  15  19  21  22  
 LCS     411       D     3    9   25       C        2   2   2   4   5   7   7   8   9  10  11  12  13  13  13  15  18  19  20  22  
 LCS     412       D     7   11   25       C        3   3   3   4   6   7   7   8  10  12  13  15  17  18  18  19  20  20  21  23  
 LCS     413       E     7   11   25       C        3   3   3   4   6   6   8  10  11  12  13  15  17  18  18  19  20  20  21  23  
 LCS     414       M     7   11   23       C        3   3   3   6   6   8   9  10  11  12  13  15  17  18  18  19  20  20  21  23  
 LCS     415       A     7   11   23       C        3   3   3   4   6   8   9  10  11  12  13  15  17  18  18  19  20  20  21  23  
 LCS     416       K     7   11   23       C        3   3   3   4   6   8   9  10  11  12  13  15  17  18  18  19  20  20  21  23  
 LCS     417       L     7   11   23       C        3   3   3   4   6   7   7   8  11  12  13  14  17  18  18  19  20  20  21  23  
 LCS     418       H     7   11   23       C        2   2   3   4   6   7   9  10  11  12  13  15  17  18  18  19  20  20  21  23  
 LCS     419       V     7   11   23       H        2   2   3   4   6   7   7   8   9  10  11  11  15  16  18  19  20  20  21  23  
 LCS     420       R     7   11   23       H        2   2   3   4   6   7   7   8   9  10  11  11  11  12  12  12  14  17  20  23  
 LCS     421       Y     7   11   23       H        2   2   3   4   6   7   7   8   9  10  11  11  11  12  12  12  12  13  13  14  
 LCS     422       M     7   11   23       C        2   2   3   4   6   7   7   8   9  10  11  11  11  12  12  12  12  13  13  14  
 LCS     423       V     7    9   23       C        1   2   3   4   4   6   7   8   9  10  11  11  11  12  12  12  12  13  14  16  
 LCS     424       G     3    7   23       C        0   1   1   2   3   4   6   8   9  10  11  11  11  12  12  12  12  15  19  23  
 LCS     425       G     3    4   23       C        0   1   1   2   2   4   6   8   9  10  11  11  11  11  12  12  12  12  12  16  
 LCS     426       R     3    8   12       C        1   1   2   2   2   3   4   4   4   5   6   6   7   7   7   9  10  12  12  14  
 LCS     427       P     7    9   12       C        1   2   3   3   4   4   4   4   4   5   5   6   7   7   7   8   8   9  11  14  
 LCS     428       S     7    9   12       C        1   2   3   3   4   4   4   4   4   5   6   6   7   7   7   8   8   9  10  12  
 LCS     429       H     7    9   12       C        1   2   3   3   4   4   4   4   4   5   6   6   7   7   7   8   8  10  11  12  
 LCS     430       P     7    9   12       C        1   2   3   3   4   4   4   4   4   5   6   6   7   7   7   8  12  12  13  14  
 LCS     431       L     7    9   24       C        1   2   3   3   4   4   4   4   4   5   6   6   9  10  12  12  12  13  13  14  
 LCS     432       Q     7    9   24       C        1   2   3   3   4   4   4   4   4   7   9  10  10  12  12  12  13  17  18  19  
 LCS     433       E     7    9   24       C        2   2   3   3   4   4   6   8   9  10  10  11  12  13  14  15  15  17  18  19  
 LCS     434       R     4    9   24       E        2   2   2   2   4   4   7   9   9  10  10  11  12  13  14  15  15  17  18  19  
 LCS     435       L     4    9   24       E        2   2   2   3   4   6   7   9   9  11  12  13  13  14  15  17  17  18  19  20  
 LCS     436       Y     4    6   24       E        2   2   2   3   4   6   7   9   9  11  12  13  13  14  15  17  17  19  19  20  
 LCS     437       S     3    6   24       E        0   1   1   2   4   6   7   9   9  11  12  13  13  14  15  17  18  19  19  21  
 LCS     438       F     3    6   24       E        0   1   1   2   3   4   7   9   9  11  12  13  13  14  15  17  18  19  19  21  
 LCS     439       E     3    6   24       C        1   2   3   4   5   6   8   9   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     440       F     3    6   24       C        2   2   3   4   5   7   8   9   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     441       P     3   14   24       C        1   1   2   2   3   6   8   8   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     442       E     4   14   24       C        1   2   6   6   6   7   7   9   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     443       S     4   14   24       C        1   2   3   6   6   7   7   9   9  10  11  11  13  15  15  17  18  19  20  23  
 LCS     444       P     4   14   24       C        1   2   2   3   6   7   7   8   9  10  11  11  12  13  14  15  15  17  18  21  
 LCS     445       G    10   14   24       C        5   5   6   6   6   7   7   7   7   9  11  11  12  13  14  15  15  17  18  23  
 LCS     446       A    10   14   24       H        5   5   6   6   6   7   7   9   9  10  12  13  14  15  15  17  18  19  20  23  
 LCS     447       L    10   14   24       H        5   5   6   6   6   7   7   9   9  10  11  12  13  15  15  17  18  19  20  23  
 LCS     448       L    10   14   24       H        5   5   6   6   6   7   7   7   9  10  11  11  12  15  15  17  18  19  20  23  
 LCS     449       R    10   14   24       H        5   5   6   6   6   7   7   9   9  10  12  13  14  15  15  17  18  19  20  23  
 LCS     450       F    10   14   24       H        5   5   6   6   6   7   8   9   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     451       L    10   14   24       H        5   5   6   6   6   7   8   8   9  10  12  13  14  15  15  17  18  19  20  23  
 LCS     452       N    10   14   24       H        5   5   6   6   6   7   7   9   9  11  12  13  14  15  15  17  18  19  20  23  
 LCS     453       T    10   14   24       H        5   5   6   6   6   7   7   8   9  11  12  13  14  14  15  17  18  19  19  20  
 LCS     454       L    10   14   24       H        5   5   6   6   6   7   7   8   9  10  11  12  14  14  15  17  18  19  20  23  
 LCS    BREAK 
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   2.47 
 
 NUMBER_OF_CA_Tg:  182      NUMBER_OF_CA_Pr:  117      PERCENT_OF_CA:  64.29  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      12      12      12      13      15      17      21      22      24      26      29      31      33      34      36      37      38      39      43  
 GDT PERCENT_OF_CA_Pr    8.55   10.26   10.26   10.26   11.11   12.82   14.53   17.95   18.80   20.51   22.22   24.79   26.50   28.21   29.06   30.77   31.62   32.48   33.33   36.75 
 GDT PERCENT_OF_CA_Tg    5.49    6.59    6.59    6.59    7.14    8.24    9.34   11.54   12.09   13.19   14.29   15.93   17.03   18.13   18.68   19.78   20.33   20.88   21.43   23.63 
 GDT FRAGMENT: Beg-End 445-454 323-334 323-334 323-334 341-359 348-416 340-407 338-407 339-407 338-407 338-407 339-418 338-418 338-418 338-419 337-419 337-419 337-419 337-419 341-454 
 GDT RMS_LOCAL           0.24    0.44    0.44    0.44    1.59    2.05    2.31    2.86    2.94    3.17    3.44    4.01    4.21    4.44    4.58    4.88    5.05    5.20    5.35    7.60 
 GDT RMS_ALL_CA         31.96   33.67   33.67   33.67   24.75   23.35   24.33   24.08   24.24   24.14   24.15   23.46   23.38   23.42   23.35   23.20   23.31   23.25   23.29   19.52 
 
 
 TEST (CA)  RMS =  17.49               (Number of atoms:  117) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   17.49        117    64.3   182     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1495                            CRMSCA  
     SECONDARY STRUCTURE . .   16.43         56    70.0    80     CRMSCA  
     SURFACE . . . . . . . .   18.86         70    61.9   113     CRMSCA  
     BURIED  . . . . . . . .   15.22         47    68.1    69     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   17.46        567    63.6   891     CRMSMC  
     SECONDARY STRUCTURE . .   16.43        275    69.3   397     CRMSMC  
     SURFACE . . . . . . . .   18.81        337    61.5   548     CRMSMC  
     BURIED  . . . . . . . .   15.25        230    67.1   343     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   17.69         99    15.6   634     CRMSSC  
     RELIABLE SIDE CHAINS  .   17.69         99    18.5   534     CRMSSC  
     SECONDARY STRUCTURE . .   16.25         51    15.8   322     CRMSSC  
     SURFACE . . . . . . . .   19.23         57    15.0   379     CRMSSC  
     BURIED  . . . . . . . .   15.37         42    16.5   255     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   17.46        567    41.6  1362     CRMSALL 
     SECONDARY STRUCTURE . .   16.43        275    42.8   642     CRMSALL 
     SURFACE . . . . . . . .   18.81        337    40.6   831     CRMSALL 
     BURIED  . . . . . . . .   15.25        230    43.3   531     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.141      1.000       0.500    117    64.3   182     ERRCA  
     SECONDARY STRUCTURE . .   15.226      1.000       0.500     56    70.0    80     ERRCA  
     SURFACE . . . . . . . .   17.497      1.000       0.500     70    61.9   113     ERRCA  
     BURIED  . . . . . . . .   14.121      1.000       0.500     47    68.1    69     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.122      1.000       0.500    567    63.6   891     ERRMC  
     SECONDARY STRUCTURE . .   15.205      1.000       0.500    275    69.3   397     ERRMC  
     SURFACE . . . . . . . .   17.479      1.000       0.500    337    61.5   548     ERRMC  
     BURIED  . . . . . . . .   14.132      1.000       0.500    230    67.1   343     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.365      1.000       0.500     99    15.6   634     ERRSC  
     RELIABLE SIDE CHAINS  .   16.365      1.000       0.500     99    18.5   534     ERRSC  
     SECONDARY STRUCTURE . .   15.142      1.000       0.500     51    15.8   322     ERRSC  
     SURFACE . . . . . . . .   17.926      1.000       0.500     57    15.0   379     ERRSC  
     BURIED  . . . . . . . .   14.247      1.000       0.500     42    16.5   255     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.122      1.000       0.500    567    41.6  1362     ERRALL 
     SECONDARY STRUCTURE . .   15.205      1.000       0.500    275    42.8   642     ERRALL 
     SURFACE . . . . . . . .   17.479      1.000       0.500    337    40.6   831     ERRALL 
     BURIED  . . . . . . . .   14.132      1.000       0.500    230    43.3   531     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         2        22     117     182   DISTCA 
CA  (P)      0.00      0.00      0.55      1.10     12.09             182   DISTCA 
CA  (RMS)    0.00      0.00      3.00      3.60      7.95                   DISTCA 
 
ALL (N)         0         1         2         7       105     567    1362   DISTALL 
ALL (P)      0.00      0.07      0.15      0.51      7.71            1362   DISTALL 
ALL (RMS)    0.00      1.21      2.29      3.76      7.84                   DISTALL 
 
 
 
 
END of the results output 
