 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 167 , MODEL 167 , TARGET 311 
#          The number of residues possible to evaluate: 167 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   153     W     E     C             1.00 
 SSP   154     V     C     C             1.00 
 SSP   155     P     C     C             1.00 
 SSP   156     P     C     C             1.00 
 SSP   157     F     C     C             1.00 
 SSP   158     D     C     H             1.00 
 SSP   159     H     C     H             1.00 
 SSP   160     P     H     H             1.00 
 SSP   161     M     H     H             1.00 
 SSP   162     V     H     H             1.00 
 SSP   163     I     H     C             1.00 
 SSP   164     A     H     C             1.00 
 SSP   165     G     H     H             1.00 
 SSP   166     Q     H     H             1.00 
 SSP   167     G     H     H             1.00 
 SSP   168     T     H     H             1.00 
 SSP   169     L     H     H             1.00 
 SSP   170     A     H     H             1.00 
 SSP   171     L     H     C             1.00 
 SSP   172     E     H     C             1.00 
 SSP   173     L     H     C             1.00 
 SSP   174     L     H     C             1.00 
 SSP   175     Q     H     C             1.00 
 SSP   176     Q     H     C             1.00 
 SSP   177     D     C     C             1.00 
 SSP   178     A     C     C             1.00 
 SSP   179     H     C     E             1.00 
 SSP   180     L     C     E             1.00 
 SSP   181     D     C     E             1.00 
 SSP   182     R     E     E             1.00 
 SSP   183     V     E     E             1.00 
 SSP   184     F     E     E             1.00 
 SSP   185     V     E     C             1.00 
 SSP   186     P     E     C             1.00 
 SSP   187     V     C     C             1.00 
 SSP   188     G     C     C             1.00 
 SSP   189     G     C     C             1.00 
 SSP   190     G     C     C             1.00 
 SSP   191     G     H     C             1.00 
 SSP   192     L     H     C             1.00 
 SSP   193     A     H     C             1.00 
 SSP   194     A     H     E             1.00 
 SSP   195     G     H     E             1.00 
 SSP   196     V     H     E             1.00 
 SSP   197     A     H     E             1.00 
 SSP   198     V     H     E             1.00 
 SSP   199     L     H     E             1.00 
 SSP   200     I     H     C             1.00 
 SSP   201     K     H     C             1.00 
 SSP   202     Q     H     C             1.00 
 SSP   203     L     H     C             1.00 
 SSP   204     M     C     C             1.00 
 SSP   205     P     C     C             1.00 
 SSP   206     Q     C     C             1.00 
 SSP   207     I     C     C             1.00 
 SSP   208     K     E     C             1.00 
 SSP   209     V     E     C             1.00 
 SSP   210     I     E     C             1.00 
 SSP   211     A     E     C             1.00 
 SSP   212     V     E     C             1.00 
 SSP   213     E     E     H             1.00 
 SSP   214     A     E     H             1.00 
 SSP   215     E     C     H             1.00 
 SSP   216     D     C     H             1.00 
 SSP   217     S     C     H             1.00 
 SSP   218     A     C     H             1.00 
 SSP   219     C     C     H             1.00 
 SSP   220     L     H     H             1.00 
 SSP   221     K     H     H             1.00 
 SSP   222     A     H     H             1.00 
 SSP   223     A     H     C             1.00 
 SSP   224     L     H     C             1.00 
 SSP   225     D     C     C             1.00 
 SSP   226     A     C     C             1.00 
 SSP   227     G     C     C             1.00 
 SSP   228     H     C     C             1.00 
 SSP   229     P     C     C             1.00 
 SSP   230     V     C     C             1.00 
 SSP   231     D     C     C             1.00 
 SSP   232     L     C     C             1.00 
 SSP   233     P     C     C             1.00 
 SSP   234     R     C     C             1.00 
 SSP   235     V     C     C             1.00 
 SSP   236     G     C     C             1.00 
 SSP   237     L     C     C             1.00 
 SSP   238     F     C     E             1.00 
 SSP   239     A     C     E             1.00 
 SSP   240     E     C     E             1.00 
 SSP   241     G     C     E             1.00 
 SSP   242     V     C     E             1.00 
 SSP   243     A     C     E             1.00 
 SSP   244     V     C     C             1.00 
 SSP   245     K     C     C             1.00 
 SSP   246     R     C     C             1.00 
 SSP   247     I     C     C             1.00 
 SSP   248     G     C     C             1.00 
 SSP   249     D     C     C             1.00 
 SSP   250     E     H     C             1.00 
 SSP   251     T     H     C             1.00 
 SSP   252     F     H     C             1.00 
 SSP   253     R     H     H             1.00 
 SSP   254     L     C     H             1.00 
 SSP   255     C     H     H             1.00 
 SSP   256     Q     H     H             1.00 
 SSP   257     E     H     H             1.00 
 SSP   258     Y     C     H             1.00 
 SSP   259     L     C     H             1.00 
 SSP   260     D     C     H             1.00 
 SSP   261     D     E     H             1.00 
 SSP   262     I     E     H             1.00 
 SSP   263     I     E     H             1.00 
 SSP   264     T     E     H             1.00 
 SSP   265     V     E     H             1.00 
 SSP   266     D     C     C             1.00 
 SSP   267     S     H     C             1.00 
 SSP   268     D     H     C             1.00 
 SSP   269     A     H     C             1.00 
 SSP   270     I     H     E             1.00 
 SSP   271     C     H     E             1.00 
 SSP   272     A     H     E             1.00 
 SSP   273     A     H     E             1.00 
 SSP   274     M     H     C             1.00 
 SSP   275     K     H     C             1.00 
 SSP   276     D     H     C             1.00 
 SSP   277     L     H     E             1.00 
 SSP   278     F     H     C             1.00 
 SSP   279     E     H     C             1.00 
 SSP   280     D     H     C             1.00 
 SSP   281     V     C     C             1.00 
 SSP   282     R     C     H             1.00 
 SSP   283     A     C     H             1.00 
 SSP   284     V     C     H             1.00 
 SSP   285     A     C     H             1.00 
 SSP   286     E     C     H             1.00 
 SSP   287     P     H     H             1.00 
 SSP   288     S     H     H             1.00 
 SSP   289     G     H     H             1.00 
 SSP   290     A     H     H             1.00 
 SSP   291     L     H     H             1.00 
 SSP   292     A     H     H             1.00 
 SSP   293     L     H     H             1.00 
 SSP   294     A     H     C             1.00 
 SSP   295     G     H     C             1.00 
 SSP   296     M     H     C             1.00 
 SSP   297     K     H     E             1.00 
 SSP   298     K     H     E             1.00 
 SSP   299     Y     H     E             1.00 
 SSP   300     I     H     E             1.00 
 SSP   301     A     H     C             1.00 
 SSP   302     L     H     C             1.00 
 SSP   303     H     H     C             1.00 
 SSP   304     N     C     C             1.00 
 SSP   305     I     C     C             1.00 
 SSP   306     R     C     C             1.00 
 SSP   307     G     C     C             1.00 
 SSP   308     E     C     C             1.00 
 SSP   309     R     E     C             1.00 
 SSP   310     L     E     C             1.00 
 SSP   311     A     E     C             1.00 
 SSP   312     H     E     E             1.00 
 SSP   313     I     E     C             1.00 
 SSP   314     L     C     C             1.00 
 SSP   315     S     C     C             1.00 
 SSP   316     G     E     C             1.00 
 SSP   317     A     C     C             1.00 
 SSP   318     N     C     C             1.00 
 SSP   319     V     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              43.1      31.5     16.7     64.3     53.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        37.0      30.0     17.2     48.7     53.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           11              51.2              39.7 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            1                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     167    100.0     43.1 
 
 BIN  0.00 - 1.00      1.00     167    100.0     43.1 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         141             141           236            308 
 ALL CONTACTS (< 8.0A)     619             645          1255           1729 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       619        258   41.68   40.00   14.92       0     0.00         645      1729  |   1-9999 
 RES CONTACTS       305        244   80.00   71.55   27.95       0     0.00         341       873  |   1-4    
 RES CONTACTS        36          2    5.56    5.26    2.30       0     0.00          38        87  |   5-8    
 RES CONTACTS       278         12    4.32    4.51    1.56       0     0.00         266       769  |   9-9999 
 
 
 
# WARNING! TARGET 2227 atoms, MODEL 3193 atoms, 1848 common with TARGET 
           Number of atoms possible to evaluate: 794 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    92.17           34.6   332    53.5   620     ARMSMC  
     SECONDARY STRUCTURE . .    92.22           37.3   166    49.1   338     ARMSMC  
     SURFACE . . . . . . . .    96.38           36.0   136    49.3   276     ARMSMC  
     BURIED  . . . . . . . .    89.13           33.7   196    57.0   344     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   212     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   185     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   124     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   163     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   118     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    96     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    72     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    58     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    45     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    38     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    38     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    21     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    21     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  153 - 319  167  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22    161 - 182      4.99    22.78 
  LCS LOCAL_SCORE:             10.40 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  153 - 319  167  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    162 - 172      1.94    37.54 
  LONGEST_CONTINUOUS_SEGMENT    11    285 - 295      1.91    22.84 
  LCS LOCAL_SCORE:              3.85 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  153 - 319  167  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    286 - 294      1.00    23.73 
  LCS LOCAL_SCORE:              2.72 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     153       W     5    5   20       E        0   1   1   1   1   1   2   3   3   4   5   5   6   7   8   9  10  12  13  14  
 LCS     154       V     5    5   20       C        0   1   1   1   1   2   2   3   3   4   5   5   6   7   8   9  10  12  13  14  
 LCS     155       P     5    5   20       C        0   1   1   1   1   2   3   3   3   4   5   5   6   6   7   9  11  12  14  15  
 LCS     156       P     5    5   20       C        0   1   1   2   2   3   4   4   4   4   5   5   6   6   8  10  11  12  14  15  
 LCS     157       F     5    5   20       C        0   1   2   3   3   3   4   4   5   5   6   7   8   8   9  10  11  13  14  16  
 LCS     158       D     3    5   20       C        0   1   2   3   3   3   4   4   5   6   6   8   8   9  10  11  12  14  15  16  
 LCS     159       H     6    6   20       C        1   1   2   2   3   3   4   4   4   6   6   7   8   9  10  11  12  14  15  16  
 LCS     160       P     6    6   20       H        1   1   1   1   1   2   3   4   4   5   6   6   8   8  10  11  12  14  15  16  
 LCS     161       M     6    6   22       H        1   1   1   1   2   3   3   4   5   6   6   7   8   8   9  10  12  14  15  16  
 LCS     162       V     6   11   22       H        1   1   1   2   3   3   4   4   5   6   6   7   8   9  10  11  12  14  15  16  
 LCS     163       I     6   11   22       H        1   1   1   2   3   3   4   4   5   5   6   7   8   9  10  11  12  14  15  16  
 LCS     164       A     6   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   8   8   9  11  12  14  15  16  
 LCS     165       G     8   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   7   8   9  10  11  12  14  15  
 LCS     166       Q     8   11   22       H        1   1   2   2   3   3   4   4   5   6   6   7   7   8   9  10  11  12  14  15  
 LCS     167       G     8   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   7   8   9  10  11  12  14  15  
 LCS     168       T     8   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   7   8   9  10  11  12  14  15  
 LCS     169       L     8   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   7   8   9  10  11  12  13  14  
 LCS     170       A     8   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   7   8   9  10  11  11  12  14  
 LCS     171       L     8   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   7   8   9  10  11  12  13  15  
 LCS     172       E     8   11   22       H        1   1   2   3   3   3   4   4   5   6   6   7   7   8   9  10  11  12  13  14  
 LCS     173       L     3    4   22       H        0   0   0   1   2   2   3   4   5   6   6   7   7   8   9  10  11  12  13  14  
 LCS     174       L     3    4   22       H        0   0   0   1   1   2   3   3   4   5   5   7   7   8   9   9  10  12  13  15  
 LCS     175       Q     4    5   22       H        0   1   1   1   1   1   2   3   4   5   6   7   7   8   9   9  10  12  13  15  
 LCS     176       Q     4    5   22       H        0   1   1   1   1   2   3   3   4   5   6   7   7   8   9   9  10  11  13  14  
 LCS     177       D     4    5   22       C        0   1   1   1   1   2   3   3   4   5   5   7   7   8   9   9  10  12  13  15  
 LCS     178       A     4    5   22       C        0   1   1   1   1   2   3   3   4   5   6   7   7   8   9  10  11  12  14  15  
 LCS     179       H     4    7   22       C        1   1   1   1   1   2   3   3   4   5   5   7   7   8   9  10  11  12  14  15  
 LCS     180       L     4    7   22       C        1   1   1   1   1   2   2   3   4   5   6   7   7   8   9  10  11  12  14  15  
 LCS     181       D     4    7   22       C        1   1   1   2   2   3   3   4   4   5   6   7   7   8   9  10  11  12  14  15  
 LCS     182       R     4    7   22       E        1   1   1   2   2   3   3   4   4   5   6   7   7   8   9  10  11  12  14  15  
 LCS     183       V     4    7   18       E        0   1   1   1   1   2   3   4   4   5   7   8  10  12  12  14  16  17  18  19  
 LCS     184       F     4    7   18       E        0   1   1   1   2   3   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     185       V     4    7   18       E        0   1   1   1   1   2   3   4   5   6   8   9  10  12  13  15  16  17  18  19  
 LCS     186       P     4    6   18       E        0   1   1   1   2   2   3   4   5   6   8   9  10  12  13  15  16  17  18  19  
 LCS     187       V     4    6   18       C        0   1   1   1   2   2   3   4   5   6   9   9  11  12  13  15  16  17  18  19  
 LCS     188       G     4    6   18       C        0   1   1   1   1   2   3   4   5   6   8   9  11  12  13  14  15  17  18  19  
 LCS     189       G     3    6   18       C        0   0   1   1   1   2   3   4   5   6   9   9  11  12  13  14  15  17  18  19  
 LCS     190       G     3    6   18       C        0   0   1   1   1   2   3   4   5   6   7   9  10  11  12  14  15  17  18  19  
 LCS     191       G     3    6   18       H        0   0   0   1   1   2   3   3   3   4   5   6   6   7   8   9  10  12  13  14  
 LCS     192       L     3    6   18       H        0   0   0   1   1   2   3   3   3   4   6   6   7   8   9   9  10  12  13  14  
 LCS     193       A     3    6   18       H        0   0   0   1   1   2   3   3   3   4   5   6   7   8  10  11  14  17  18  18  
 LCS     194       A     3    4   18       H        1   1   1   1   1   2   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     195       G     3    4   18       H        1   1   1   1   1   2   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     196       V     3    4   18       H        1   1   1   1   1   2   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     197       A     3    4   18       H        0   0   1   1   2   3   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     198       V     3    3   17       H        0   0   0   1   1   2   3   3   4   5   6   8   9  12  13  15  16  17  18  19  
 LCS     199       L     3    4   17       H        0   0   0   2   2   3   3   3   4   5   6   7   9  12  13  15  16  17  18  19  
 LCS     200       I     3    8   17       H        0   0   0   1   1   2   3   3   4   5   6   7   8   9  12  15  16  17  18  19  
 LCS     201       K     6    8   17       H        1   1   1   2   2   2   3   3   4   5   6   7   7   8   9  10  11  14  18  18  
 LCS     202       Q     6    8   17       H        1   1   1   2   2   2   3   3   4   5   5   6   7   8   9  10  11  13  15  18  
 LCS     203       L     6    8   17       H        1   1   1   2   2   2   3   3   4   5   5   7   7   9  10  13  14  16  18  19  
 LCS     204       M     6    8   17       C        1   1   1   2   2   2   3   3   4   5   6   7  10  12  13  15  16  17  18  19  
 LCS     205       P     6    8   17       C        1   1   1   2   2   2   3   3   4   5   7   9  10  12  13  15  16  17  18  19  
 LCS     206       Q     6    8   17       C        1   1   1   2   2   3   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     207       I     6    8   17       C        0   1   1   2   2   3   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     208       K     5    8   17       E        0   1   1   1   2   3   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     209       V     5    6   17       E        0   1   1   1   2   2   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     210       I     5    6   17       E        0   1   1   1   1   2   3   3   4   5   7   9  10  12  13  15  16  17  18  19  
 LCS     211       A     5    6   17       E        0   1   1   1   2   2   3   3   5   5   6   7   9  10  12  15  16  17  18  19  
 LCS     212       V     4    5   17       E        0   1   1   1   2   2   3   4   5   5   6   7   9  11  13  15  16  17  18  19  
 LCS     213       E     4    5   18       E        0   1   1   1   2   3   3   4   5   5   6   8  10  12  13  15  16  17  18  19  
 LCS     214       A     4    6   18       E        0   1   1   2   3   3   4   4   5   6   6   8   8   9  12  14  15  17  18  19  
 LCS     215       E     4    6   18       C        0   1   1   1   1   3   4   4   5   6   6   8   8   9   9  10  12  14  17  19  
 LCS     216       D     4    6   18       C        0   1   1   1   1   2   3   3   4   5   6   8   8   9  10  12  15  16  18  19  
 LCS     217       S     4    6   18       C        0   1   1   1   2   2   3   4   5   6   6   8   9  10  13  15  16  17  18  19  
 LCS     218       A     3    6   18       C        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     219       C     4    6   18       C        1   1   1   1   3   4   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     220       L     4    6   18       H        1   1   1   2   3   4   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     221       K     4    6   18       H        1   1   1   2   3   3   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     222       A     4    6   18       H        1   1   1   2   3   3   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     223       A     4    6   18       H        0   1   1   2   3   3   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     224       L     3    5   18       H        0   0   1   1   3   3   4   4   6   7   7   9  11  12  13  15  16  17  18  19  
 LCS     225       D     4    5   18       C        0   0   1   1   1   2   3   4   5   6   9   9  11  12  13  14  15  17  18  19  
 LCS     226       A     4    5   18       C        1   1   1   1   2   3   3   4   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     227       G     4    5   18       C        1   1   1   1   1   2   2   3   6   7   7   9  11  12  13  15  16  17  18  19  
 LCS     228       H     4    5   18       C        1   1   1   2   2   3   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     229       P     4    5   18       C        1   1   1   2   3   4   4   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     230       V     3    5   18       C        0   0   1   1   1   2   3   4   6   6   7   8   9  10  12  13  14  15  17  18  
 LCS     231       D     3    5   18       C        0   0   1   1   1   2   4   4   5   6   6   7   9   9  12  13  15  17  18  19  
 LCS     232       L     3    7   15       C        0   1   1   2   3   4   5   5   5   6   6   7   9  11  13  15  16  17  18  19  
 LCS     233       P     5    7   15       C        0   1   2   2   3   4   5   5   5   6   7   9  10  12  13  15  16  17  18  19  
 LCS     234       R     5    7   15       C        0   1   2   2   3   4   5   5   5   6   7   8   9  12  13  15  16  17  18  19  
 LCS     235       V     5    7   15       C        0   1   2   2   3   4   5   5   5   6   7   8   9  10  12  14  15  17  18  19  
 LCS     236       G     5    7   15       C        0   1   1   2   3   4   5   5   6   7   8   9  10  12  13  14  15  17  18  19  
 LCS     237       L     5    7   15       C        0   1   1   2   3   4   5   5   6   7   8   9  10  11  13  14  15  17  18  19  
 LCS     238       F     5    7   15       C        0   1   1   2   3   4   5   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     239       A     5    7   15       C        0   1   1   1   1   3   5   5   6   6   7   9  10  11  12  14  15  17  18  19  
 LCS     240       E     5    7   15       C        0   0   1   1   3   4   5   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     241       G     4    7   15       C        0   1   1   1   3   4   5   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     242       V     4    6   15       C        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     243       A     4    6   15       C        0   1   1   1   1   2   3   4   4   5   8   9  11  12  13  14  15  17  18  19  
 LCS     244       V     4    6   15       C        0   1   1   1   1   3   3   4   5   5   6   8   9  10  11  12  13  14  15  17  
 LCS     245       K     4    6   19       C        0   1   1   1   1   2   3   4   4   5   5   6   8   9  10  12  13  14  14  15  
 LCS     246       R     4    6   19       C        0   1   1   1   1   2   2   3   3   5   5   6   7   8   8   9  10  11  13  14  
 LCS     247       I     4    6   19       C        0   1   1   1   1   2   2   3   4   5   5   6   7   8   8   9   9  10  11  14  
 LCS     248       G     4    5   19       C        0   0   1   1   1   1   2   3   3   4   6   6   7   8   8   9   9  10  12  14  
 LCS     249       D     4    4   19       C        0   0   1   1   1   2   2   3   4   5   6   6   7   8   8   9   9  10  11  14  
 LCS     250       E     4    4   19       H        0   0   1   1   2   2   3   4   4   5   6   6   7   8   8   9   9  10  11  12  
 LCS     251       T     4    8   19       H        0   0   1   1   2   2   3   4   4   5   6   6   7   8   8   9   9  10  11  12  
 LCS     252       F     6    9   19       H        0   1   1   2   2   3   3   4   4   5   6   6   7   8   8   9   9  10  11  12  
 LCS     253       R     6    9   19       H        1   1   1   2   2   3   3   4   4   5   6   6   7   7   8   9   9  10  11  12  
 LCS     254       L     6    9   19       C        1   1   1   2   2   3   3   4   4   5   6   6   6   7   8   9   9  10  11  12  
 LCS     255       C     6    9   19       H        1   1   1   2   2   3   3   4   4   5   6   6   6   7   8   9   9  10  11  12  
 LCS     256       Q     6    9   19       H        1   1   1   2   2   3   3   4   4   5   6   6   6   7   8   9   9  10  11  12  
 LCS     257       E     6    9   19       H        1   1   1   2   2   3   3   4   4   5   6   6   6   7   8   9   9  10  11  12  
 LCS     258       Y     5    9   19       C        1   1   1   2   2   3   3   4   4   5   6   6   6   7   8   9   9  11  12  13  
 LCS     259       L     5    9   19       C        1   1   1   2   2   3   3   4   4   5   6   6   6   7   8   9  10  11  12  13  
 LCS     260       D     3    9   19       C        0   0   0   1   2   3   3   3   4   5   6   6   6   7   8   9   9  10  12  13  
 LCS     261       D     3    4   19       E        0   0   0   1   1   2   3   4   4   5   5   5   6   7   8   9   9  11  12  13  
 LCS     262       I     3    4   19       E        0   0   0   1   1   1   2   3   4   5   5   6   7   7   8   9  10  12  13  14  
 LCS     263       I     3    3   19       E        0   0   0   0   1   1   2   3   4   5   5   6   7   7   8   9  10  12  13  14  
 LCS     264       T     3    3   19       E        0   0   0   0   1   1   2   3   4   5   5   6   7   7   9   9  11  12  13  16  
 LCS     265       V     4    4   17       E        0   1   1   1   2   3   3   4   5   5   6   6   7   9  10  11  13  14  15  16  
 LCS     266       D     4    4   14       C        0   1   2   2   3   3   4   4   5   5   6   8   9  10  11  13  14  14  16  17  
 LCS     267       S     4    4   14       H        0   1   2   2   3   4   5   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     268       D     4    4   14       H        0   1   1   1   1   1   2   4   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     269       A     3    4   14       H        0   0   1   1   1   1   2   3   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     270       I     3    4   14       H        0   0   1   1   1   2   2   3   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     271       C     3    4   15       H        0   0   1   1   1   2   2   3   5   6   8   9  10  12  13  14  15  17  18  19  
 LCS     272       A     3    3   15       H        0   0   0   0   1   2   3   3   4   4   5   6   6   7   9  12  15  17  18  19  
 LCS     273       A     3    4   15       H        0   0   0   1   1   3   3   3   4   6   8   9  10  11  13  14  16  17  18  19  
 LCS     274       M     3    4   15       H        0   0   0   1   1   1   3   3   3   4   5   6   7   8   9  12  15  17  18  19  
 LCS     275       K     3    4   15       H        0   0   0   1   1   1   3   3   3   5   5   6   7   8   9  10  15  17  18  19  
 LCS     276       D     3    4   16       H        0   0   0   1   1   2   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     277       L     4    4   16       H        0   1   1   2   3   3   4   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     278       F     4    4   16       H        0   1   1   2   3   3   4   4   5   6   7   9  10  12  13  15  16  17  18  19  
 LCS     279       E     4    4   16       H        0   1   1   2   3   3   4   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     280       D     4    5   16       H        0   1   1   2   3   3   4   4   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     281       V     4    5   16       C        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     282       R     4    5   16       C        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     283       A     4    5   16       C        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  15  16  17  18  19  
 LCS     284       V     3    5   16       C        0   0   0   1   1   2   3   4   5   7   8   9  11  12  13  15  16  17  18  19  
 LCS     285       A     3   11   16       C        0   0   0   1   2   3   4   4   5   5   6   9  10  12  13  15  16  17  18  19  
 LCS     286       E     9   11   16       C        1   1   3   3   3   3   3   4   5   5   6   8   9  10  11  12  13  14  17  18  
 LCS     287       P     9   11   16       H        1   1   3   3   3   3   4   4   5   5   6   8   9  10  11  13  14  17  18  19  
 LCS     288       S     9   11   16       H        1   1   3   3   3   3   4   4   5   5   6   8   9  10  11  12  14  16  17  18  
 LCS     289       G     9   11   16       H        1   1   3   3   3   3   4   4   5   5   6   7   9   9  10  12  13  14  17  18  
 LCS     290       A     9   11   16       H        1   1   3   3   3   3   4   4   5   6   6   8   9  10  11  13  14  14  16  18  
 LCS     291       L     9   11   16       H        1   1   3   3   3   3   5   5   5   6   6   8   9  10  11  13  14  15  16  18  
 LCS     292       A     9   11   16       H        1   1   3   3   3   4   5   5   5   6   6   8   9  10  11  13  14  14  15  17  
 LCS     293       L     9   11   16       H        1   1   3   3   3   4   5   5   5   6   6   8   9  10  11  13  14  14  15  17  
 LCS     294       A     9   11   16       H        1   1   3   3   3   4   5   5   5   6   6   8   9  10  11  13  14  14  15  17  
 LCS     295       G     7   11   16       H        1   1   3   3   3   4   5   5   5   6   6   8   9  10  11  13  14  14  15  17  
 LCS     296       M     3    4   16       H        0   0   0   0   1   1   2   4   4   5   6   8   9  10  11  12  14  14  15  17  
 LCS     297       K     3    4   16       H        0   0   0   0   1   1   2   3   4   5   7   8  11  11  12  14  15  15  16  18  
 LCS     298       K     3    3   16       H        0   0   0   1   1   1   3   3   5   5   6   9  11  12  13  14  15  17  18  19  
 LCS     299       Y     3    3   14       H        0   0   0   1   1   2   3   3   5   5   6   9  11  12  13  14  15  17  18  19  
 LCS     300       I     3    3   14       H        0   0   0   1   1   2   3   3   4   5   6   6   7   8  13  14  15  17  18  19  
 LCS     301       A     3    4   14       H        0   0   0   1   1   1   2   3   5   6   7   9  10  11  12  14  15  17  18  19  
 LCS     302       L     4    5   14       H        0   1   1   1   1   2   3   4   5   6   7   9   9  11  12  14  15  17  18  19  
 LCS     303       H     4    6   14       H        0   1   1   1   1   2   3   4   5   6   7   9   9  10  11  12  15  17  18  19  
 LCS     304       N     4    7   14       C        0   1   1   1   1   2   2   4   5   6   7   9   9  11  12  14  15  17  18  19  
 LCS     305       I     4    7   14       C        0   1   1   1   2   3   3   4   5   6   8   9  10  11  12  14  15  17  18  19  
 LCS     306       R     3    7   14       C        0   0   1   1   2   3   4   4   5   6   8   9  10  11  12  14  15  17  18  19  
 LCS     307       G     3    7   14       C        0   0   1   1   2   3   4   4   5   6   8   9  10  12  13  14  15  17  18  19  
 LCS     308       E     4    7   14       C        0   1   1   1   3   4   4   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     309       R     4    7   14       E        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     310       L     4    7   14       E        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     311       A     4    7   14       E        0   1   1   2   3   4   4   5   6   7   9   9  11  12  13  14  15  17  18  19  
 LCS     312       H     4    7   14       E        0   1   1   1   2   3   3   4   5   6   8   8  10  11  13  14  15  17  18  19  
 LCS     313       I     3    7   14       E        0   0   1   1   2   3   3   3   5   6   8   8   9  10  12  13  14  15  16  19  
 LCS     314       L     3    5   14       C        0   0   1   1   1   2   3   3   4   5   6   8   9  10  11  13  14  16  18  19  
 LCS     315       S     4    5   13       C        0   0   1   1   1   2   2   3   3   3   6   8   9  10  11  12  13  14  15  16  
 LCS     316       G     4    5   13       E        0   0   1   1   1   2   4   4   5   5   6   8   9   9  11  13  15  16  18  19  
 LCS     317       A     4    5   13       C        0   0   1   1   1   2   2   3   3   5   7   8  10  12  13  15  16  17  18  19  
 LCS     318       N     4    5   11       C        0   0   1   1   2   3   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS     319       V     3    4   10       C        1   1   1   1   2   2   3   4   6   7   7   9  10  12  13  15  16  17  18  19  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.78 
 
 NUMBER_OF_CA_Tg:  311      NUMBER_OF_CA_Pr:  167      PERCENT_OF_CA:  53.70  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       6       6      10      10      12      15      16      17      19      23      28      30      35      39      42      48      50      53      57      62  
 GDT PERCENT_OF_CA_Pr    3.59    3.59    5.99    5.99    7.19    8.98    9.58   10.18   11.38   13.77   16.77   17.96   20.96   23.35   25.15   28.74   29.94   31.74   34.13   37.13 
 GDT PERCENT_OF_CA_Tg    1.93    1.93    3.22    3.22    3.86    4.82    5.14    5.47    6.11    7.40    9.00    9.65   11.25   12.54   13.50   15.43   16.08   17.04   18.33   19.94 
 GDT FRAGMENT: Beg-End 290-295 290-295 286-295 286-295 157-172 218-311 232-295 232-295 218-311 218-311 187-311 184-319 187-311 186-311 186-311 184-319 183-319 183-319 183-319 184-311 
 GDT RMS_LOCAL           0.21    0.21    1.03    1.03    1.52    2.32    2.41    2.55    2.84    3.80    4.43    4.47    4.89    5.27    5.47    5.95    6.08    6.30    6.57    7.05 
 GDT RMS_ALL_CA         23.09   23.09   24.17   24.17   35.92   20.15   22.94   22.74   20.20   19.68   19.62   19.16   19.57   19.62   19.64   19.20   19.15   19.11   19.14   20.21 
 
 
 TEST (CA)  RMS =  17.24               (Number of atoms:  167) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   17.24        167    53.7   311     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1032                            CRMSCA  
     SECONDARY STRUCTURE . .   16.09         83    49.1   169     CRMSCA  
     SURFACE . . . . . . . .   19.02         69    49.6   139     CRMSCA  
     BURIED  . . . . . . . .   15.85         98    57.0   172     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   17.23        794    52.1  1524     CRMSMC  
     SECONDARY STRUCTURE . .   16.15        396    47.5   833     CRMSMC  
     SURFACE . . . . . . . .   18.87        329    48.3   681     CRMSMC  
     BURIED  . . . . . . . .   15.96        465    55.2   843     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   17.42        126    12.8   983     CRMSSC  
     RELIABLE SIDE CHAINS  .   17.42        126    15.8   795     CRMSSC  
     SECONDARY STRUCTURE . .   16.22         64    11.2   569     CRMSSC  
     SURFACE . . . . . . . .   18.88         53    10.6   498     CRMSSC  
     BURIED  . . . . . . . .   16.28         73    15.1   485     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   17.23        794    35.7  2227     CRMSALL 
     SECONDARY STRUCTURE . .   16.15        396    31.8  1245     CRMSALL 
     SURFACE . . . . . . . .   18.87        329    31.2  1054     CRMSALL 
     BURIED  . . . . . . . .   15.96        465    39.6  1173     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.256      1.000       0.500    167    53.7   311     ERRCA  
     SECONDARY STRUCTURE . .   15.285      1.000       0.500     83    49.1   169     ERRCA  
     SURFACE . . . . . . . .   18.161      1.000       0.500     69    49.6   139     ERRCA  
     BURIED  . . . . . . . .   14.915      1.000       0.500     98    57.0   172     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.270      1.000       0.500    794    52.1  1524     ERRMC  
     SECONDARY STRUCTURE . .   15.366      1.000       0.500    396    47.5   833     ERRMC  
     SURFACE . . . . . . . .   18.019      1.000       0.500    329    48.3   681     ERRMC  
     BURIED  . . . . . . . .   15.033      1.000       0.500    465    55.2   843     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.448      1.000       0.500    126    12.8   983     ERRSC  
     RELIABLE SIDE CHAINS  .   16.448      1.000       0.500    126    15.8   795     ERRSC  
     SECONDARY STRUCTURE . .   15.484      1.000       0.500     64    11.2   569     ERRSC  
     SURFACE . . . . . . . .   18.031      1.000       0.500     53    10.6   498     ERRSC  
     BURIED  . . . . . . . .   15.299      1.000       0.500     73    15.1   485     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.270      1.000       0.500    794    35.7  2227     ERRALL 
     SECONDARY STRUCTURE . .   15.366      1.000       0.500    396    31.8  1245     ERRALL 
     SURFACE . . . . . . . .   18.019      1.000       0.500    329    31.2  1054     ERRALL 
     BURIED  . . . . . . . .   15.033      1.000       0.500    465    39.6  1173     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         1        21     167     311   DISTCA 
CA  (P)      0.00      0.00      0.00      0.32      6.75             311   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.70      7.94                   DISTCA 
 
ALL (N)         0         0         0         2       102     794    2227   DISTALL 
ALL (P)      0.00      0.00      0.00      0.09      4.58            2227   DISTALL 
ALL (RMS)    0.00      0.00      0.00      4.78      8.09                   DISTALL 
 
 
 
 
END of the results output 
