 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 140 , MODEL 140 , TARGET 493 
#          The number of residues possible to evaluate: 140 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    47     V     E     C             1.00 
 SSP    48     I     E     C             1.00 
 SSP    49     L     E     E             1.00 
 SSP    50     V     E     E             1.00 
 SSP    51     K     E     E             1.00 
 SSP    52     R     C     C             1.00 
 SSP    53     E     H     C             1.00 
 SSP    54     D     H     C             1.00 
 SSP    55     R     H     C             1.00 
 SSP    56     Q     C     E             1.00 
 SSP    57     P     C     C             1.00 
 SSP    58     V     C     C             1.00 
 SSP    59     H     C     C             1.00 
 SSP    60     S     E     E             1.00 
 SSP    61     F     C     C             1.00 
 SSP    62     K     C     C             1.00 
 SSP    63     L     H     C             1.00 
 SSP    64     R     H     C             1.00 
 SSP    65     G     H     H             1.00 
 SSP    66     A     H     H             1.00 
 SSP    67     Y     H     H             1.00 
 SSP    68     A     H     H             1.00 
 SSP    69     M     H     H             1.00 
 SSP    70     M     H     H             1.00 
 SSP    71     A     H     H             1.00 
 SSP    72     G     H     H             1.00 
 SSP    73     L     H     H             1.00 
 SSP    74     T     H     H             1.00 
 SSP    75     E     H     H             1.00 
 SSP    76     E     H     H             1.00 
 SSP    77     Q     C     H             1.00 
 SSP    78     K     C     C             1.00 
 SSP    79     A     C     C             1.00 
 SSP    80     H     C     C             1.00 
 SSP    81     G     C     C             1.00 
 SSP    82     V     C     E             1.00 
 SSP    83     I     E     E             1.00 
 SSP    84     T     E     E             1.00 
 SSP    85     A     E     C             1.00 
 SSP    86     S     C     C             1.00 
 SSP    87     A     C     C             1.00 
 SSP    88     G     C     C             1.00 
 SSP    89     N     C     C             1.00 
 SSP    90     H     H     C             1.00 
 SSP    91     A     H     C             1.00 
 SSP    92     Q     H     H             1.00 
 SSP    93     G     H     H             1.00 
 SSP    94     V     H     H             1.00 
 SSP    95     A     H     H             1.00 
 SSP    96     F     H     H             1.00 
 SSP    97     S     H     H             1.00 
 SSP    98     S     H     H             1.00 
 SSP    99     A     H     H             1.00 
 SSP   100     R     H     H             1.00 
 SSP   101     L     H     H             1.00 
 SSP   102     G     C     C             1.00 
 SSP   103     V     C     C             1.00 
 SSP   104     K     C     E             1.00 
 SSP   105     A     E     E             1.00 
 SSP   106     L     E     E             1.00 
 SSP   107     I     E     C             1.00 
 SSP   108     V     E     C             1.00 
 SSP   109     M     E     C             1.00 
 SSP   110     P     C     C             1.00 
 SSP   111     T     C     C             1.00 
 SSP   112     A     C     C             1.00 
 SSP   113     T     C     C             1.00 
 SSP   114     A     C     C             1.00 
 SSP   115     D     H     C             1.00 
 SSP   116     I     H     C             1.00 
 SSP   117     K     H     C             1.00 
 SSP   118     V     H     C             1.00 
 SSP   119     D     H     C             1.00 
 SSP   120     A     H     C             1.00 
 SSP   121     V     H     C             1.00 
 SSP   122     R     H     C             1.00 
 SSP   123     G     H     C             1.00 
 SSP   124     F     H     C             1.00 
 SSP   125     G     C     C             1.00 
 SSP   126     G     C     H             1.00 
 SSP   127     E     E     H             1.00 
 SSP  BREAK 
 SSP   131     H     C     H             1.00 
 SSP   132     G     C     H             1.00 
 SSP   133     A     C     H             1.00 
 SSP   134     N     C     H             1.00 
 SSP   135     F     H     H             1.00 
 SSP   136     D     H     H             1.00 
 SSP   137     E     H     H             1.00 
 SSP   138     A     H     H             1.00 
 SSP   139     K     H     H             1.00 
 SSP   140     A     H     H             1.00 
 SSP   141     K     H     H             1.00 
 SSP   142     A     H     H             1.00 
 SSP   143     I     C     H             1.00 
 SSP   144     E     H     H             1.00 
 SSP   145     L     H     H             1.00 
 SSP   146     S     H     H             1.00 
 SSP   147     Q     H     C             1.00 
 SSP   148     Q     H     C             1.00 
 SSP   149     Q     H     C             1.00 
 SSP   150     G     C     C             1.00 
 SSP   151     F     C     C             1.00 
 SSP   152     T     C     E             1.00 
 SSP   153     W     E     E             1.00 
 SSP   154     V     C     E             1.00 
 SSP   155     P     C     C             1.00 
 SSP   156     P     C     E             1.00 
 SSP   157     F     C     C             1.00 
 SSP   158     D     C     C             1.00 
 SSP   159     H     C     C             1.00 
 SSP   160     P     H     C             1.00 
 SSP   161     M     H     C             1.00 
 SSP   162     V     H     C             1.00 
 SSP   163     I     H     C             1.00 
 SSP   164     A     H     C             1.00 
 SSP   165     G     H     H             1.00 
 SSP   166     Q     H     H             1.00 
 SSP   167     G     H     H             1.00 
 SSP   168     T     H     H             1.00 
 SSP   169     L     H     H             1.00 
 SSP   170     A     H     H             1.00 
 SSP   171     L     H     H             1.00 
 SSP   172     E     H     H             1.00 
 SSP   173     L     H     H             1.00 
 SSP   174     L     H     H             1.00 
 SSP   175     Q     H     H             1.00 
 SSP   176     Q     H     H             1.00 
 SSP   177     D     C     H             1.00 
 SSP   178     A     C     C             1.00 
 SSP   179     H     C     C             1.00 
 SSP   180     L     C     C             1.00 
 SSP   181     D     C     C             1.00 
 SSP   182     R     E     C             1.00 
 SSP   183     V     E     C             1.00 
 SSP   184     F     E     E             1.00 
 SSP   185     V     E     C             1.00 
 SSP   186     P     E     C             1.00 
 SSP   187     V     C     C             1.00 
 SSP   188     G     C     C             1.00 
 SSP   189     G     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              64.3      64.3     47.6     71.4     28.4 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        64.8      72.7     52.8     59.4     28.4 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           12              66.7               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     140    100.0     64.3 
 
 BIN  0.00 - 1.00      1.00     140    100.0     64.3 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         132             132           133            489 
 ALL CONTACTS (< 8.0A)     605             597           613           2555 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       605        347   57.36   58.12   13.58       0     0.00         597      2555  |   1-9999 
 RES CONTACTS       351        313   89.17   86.46   23.64       0     0.00         362      1324  |   1-4    
 RES CONTACTS        33          8   24.24   22.22    6.61       0     0.00          36       121  |   5-8    
 RES CONTACTS       221         26   11.76   13.07    2.34       0     0.00         199      1110  |   9-9999 
 
 
 
# WARNING! TARGET 3589 atoms, MODEL 3585 atoms, 3235 common with TARGET 
           Number of atoms possible to evaluate: 677 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    71.67           51.1   276    28.1   981     ARMSMC  
     SECONDARY STRUCTURE . .    51.33           67.6   170    34.2   497     ARMSMC  
     SURFACE . . . . . . . .    77.59           40.0   110    22.3   493     ARMSMC  
     BURIED  . . . . . . . .    67.46           58.4   166    34.0   488     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   339     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   303     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   187     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   174     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   165     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   262     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   186     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   145     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   150     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    93     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    56     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    65     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   47 - 127  81   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    54     59 - 112      4.96    16.51 
  LONGEST_CONTINUOUS_SEGMENT    54     60 - 113      4.74    16.45 
  LONGEST_CONTINUOUS_SEGMENT    54     61 - 114      4.91    16.33 
  LCS LOCAL_SCORE:             54.06 
 
 FRAGMENT  2  131 - 189  59   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    29    161 - 189      4.59    26.00 
  LCS LOCAL_SCORE:             48.26 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   47 - 127  81   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22     90 - 111      1.98    17.89 
  LCS LOCAL_SCORE:             15.76 
 
 FRAGMENT  2  131 - 189  59   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17    134 - 150      1.95    20.29 
  LCS LOCAL_SCORE:             21.86 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   47 - 127  81   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15     91 - 105      1.00    18.66 
  LONGEST_CONTINUOUS_SEGMENT    15     95 - 109      0.98    18.05 
  LCS LOCAL_SCORE:              9.98 
 
 FRAGMENT  2  131 - 189  59   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    164 - 178      0.94    27.66 
  LCS LOCAL_SCORE:             15.25 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      47       V     6    8   21       E        0   0   1   1   1   1   1   2   3   3   3   3   3   3   4   4   4   4   4   5  
 LCS      48       I     6    8   21       E        0   1   1   1   1   1   1   2   2   2   3   3   3   3   4   4   4   4   4   4  
 LCS      49       L     6    8   21       E        0   1   1   1   1   1   2   2   3   3   3   3   3   3   4   4   4   4   4   4  
 LCS      50       V     6    8   21       E        0   1   1   1   1   1   2   2   3   3   3   3   3   3   4   4   4   4   4   4  
 LCS      51       K     6    8   21       E        0   1   1   1   1   1   1   2   3   3   3   3   3   3   4   4   4   4   4   5  
 LCS      52       R     6    8   21       C        0   1   1   1   1   1   2   2   3   3   3   3   3   3   4   4   4   4   4   5  
 LCS      53       E     5    8   22       H        0   0   1   1   1   1   2   2   3   3   3   3   3   3   4   5   6   7   8  11  
 LCS      54       D     4    8   24       H        0   0   1   1   1   1   2   2   2   3   3   3   3   3   5   7   8   9  12  13  
 LCS      55       R     5    5   26       H        0   0   1   1   1   1   2   2   3   3   3   3   4   6   8   9  10  11  12  13  
 LCS      56       Q     5    5   26       C        0   0   1   1   1   2   3   3   4   5   5   6   6   7   8   9  10  11  12  13  
 LCS      57       P     5    6   26       C        0   0   1   1   2   2   3   3   4   4   5   5   6   7   8   9  10  11  12  13  
 LCS      58       V     5    6   26       C        0   0   1   1   2   2   3   3   3   3   4   5   6   7   7   9  10  11  12  13  
 LCS      59       H     5    6   54       C        0   0   1   1   1   2   3   3   4   5   5   6   6   7   8   9  10  11  12  13  
 LCS      60       S     4    6   54       E        0   0   0   1   2   2   3   3   4   5   6   7   8   9  10  10  10  11  12  13  
 LCS      61       F     4    6   54       C        0   0   0   1   1   2   3   4   5   6   7   8   9   9  10  10  10  11  12  13  
 LCS      62       K     4    6   54       C        0   0   0   1   1   3   5   6   7   8   9   9  10  10  10  10  10  11  12  13  
 LCS      63       L     4   15   54       H        0   0   0   1   2   3   5   6   7   8   9   9  10  10  10  10  10  11  12  13  
 LCS      64       R    12   15   54       H        2   2   2   3   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  12  
 LCS      65       G    12   15   54       H        2   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  11  
 LCS      66       A    12   15   54       H        2   2   2   2   2   2   3   3   5   7   8   8  10  10  10  10  10  10  11  11  
 LCS      67       Y    12   15   54       H        2   2   2   2   2   3   5   6   7   8   9   9  10  10  10  10  10  11  12  13  
 LCS      68       A    12   15   54       H        2   2   2   3   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      69       M    12   15   54       H        2   2   2   3   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  12  
 LCS      70       M    12   15   54       H        2   2   2   2   2   2   5   7   8   8   9   9  10  10  10  10  10  10  12  13  
 LCS      71       A    12   15   54       H        2   2   2   2   3   5   5   6   7   8   9   9  10  10  10  10  10  11  12  13  
 LCS      72       G    12   15   54       H        2   2   2   2   3   3   3   4   6   8   8   9  10  10  10  10  10  11  12  13  
 LCS      73       L    12   15   54       H        2   2   3   3   4   5   6   7   8   8   9   9  10  10  10  10  10  10  12  13  
 LCS      74       T    12   15   54       H        1   2   2   2   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  13  
 LCS      75       E    12   15   54       H        0   1   2   2   2   2   4   6   6   7   8   9  10  10  10  10  10  11  12  13  
 LCS      76       E     6   15   54       H        0   1   2   2   2   3   3   6   6   7   9   9  10  10  10  10  10  11  12  13  
 LCS      77       Q     6   15   54       C        0   1   2   2   3   5   6   7   8   8   9   9  10  10  10  10  10  10  11  11  
 LCS      78       K     3   15   54       C        0   0   0   0   1   2   5   7   8   8   9   9  10  10  10  10  10  10  11  11  
 LCS      79       A     3    7   54       C        0   0   0   2   3   5   6   7   8   8   9   9  10  10  10  10  10  10  11  11  
 LCS      80       H     3    7   54       C        0   1   2   3   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  11  
 LCS      81       G     3    7   54       C        0   1   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  11  
 LCS      82       V     4    7   54       C        0   1   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  10  12  13  
 LCS      83       I     4    7   54       E        0   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      84       T     4    7   54       E        0   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      85       A     4    7   54       E        0   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      86       S     3    7   54       C        0   0   1   2   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      87       A     3    7   54       C        0   0   1   1   3   4   5   7   7   8   9   9  10  10  10  10  10  11  12  13  
 LCS      88       G     3    7   54       C        0   0   0   1   3   4   5   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      89       N     3    7   54       C        0   0   0   1   2   4   5   6   7   8   9   9  10  10  10  10  10  11  12  13  
 LCS      90       H     3   22   54       H        0   0   0   3   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      91       A    15   22   54       H        0   1   2   3   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      92       Q    15   22   54       H        0   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      93       G    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      94       V    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      95       A    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      96       F    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      97       S    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      98       S    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS      99       A    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     100       R    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     101       L    15   22   54       H        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     102       G    15   22   54       C        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     103       V    15   22   54       C        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     104       K    15   22   54       C        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  13  
 LCS     105       A    15   22   54       E        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     106       L    15   22   54       E        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  10  11  13  
 LCS     107       I    15   22   54       E        1   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     108       V    15   22   54       E        0   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     109       M    15   22   54       E        0   2   3   4   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     110       P     6   22   54       C        0   2   3   3   4   5   6   7   8   8   9   9  10  10  10  10  10  11  12  13  
 LCS     111       T     6   22   54       C        0   1   1   3   4   4   5   6   8   8   9   9  10  10  10  10  10  10  11  11  
 LCS     112       A     4   10   54       C        0   0   1   1   1   2   3   5   6   7   8   9   9  10  10  10  10  10  11  11  
 LCS     113       T     4    5   54       C        0   0   0   0   1   2   2   3   5   6   7   8   9  10  10  10  10  10  11  11  
 LCS     114       A     4    5   54       C        0   0   1   1   1   1   2   2   3   3   4   6   6   7   8   9  10  10  11  11  
 LCS     115       D     3    5   19       H        0   0   1   1   1   1   2   2   2   3   4   4   5   6   7   8   8   9   9  10  
 LCS     116       I     4    4   19       H        0   0   0   1   1   2   2   2   2   3   3   4   4   5   7   8   8   9   9   9  
 LCS     117       K     4    9   19       H        0   0   1   1   1   2   2   2   2   2   3   3   3   3   4   4   5   7   7   8  
 LCS     118       V     4    9   19       H        0   0   0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   4   4  
 LCS     119       D     4    9   19       H        0   0   0   1   1   1   1   2   2   2   3   3   3   3   3   6   7   7   7   8  
 LCS     120       A     6    9   19       H        0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   4   7   8  
 LCS     121       V     6    9   19       H        0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   3   5   5  
 LCS     122       R     6    9   19       H        0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   3   4   4  
 LCS     123       G     6    9   19       H        0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   3   4   5  
 LCS     124       F     6    9   19       H        0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   3   4   4  
 LCS     125       G     6    9   19       C        0   1   1   1   1   2   2   2   2   2   3   3   3   3   3   3   3   3   4   4  
 LCS     126       G     3    7   19       C        0   0   0   0   1   2   2   2   2   2   3   3   3   3   3   3   3   3   4   4  
 LCS     127       E     3    6   19       E        0   0   0   1   1   2   2   2   2   2   3   3   3   3   3   3   3   3   4   4  
 LCS     128       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     129       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     130       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     131       H     3    3   27       C        0   0   0   0   0   1   1   1   1   1   2   2   2   3   3   3   4   4   4   5  
 LCS     132       G     4    4   28       C        0   0   0   0   0   1   1   1   1   1   2   3   4   4   4   9   9   9  11  12  
 LCS     133       A     4   16   28       C        0   0   0   0   2   2   3   3   4   7   7   7   8   8  10  10  10  11  12  13  
 LCS     134       N    13   17   28       C        1   2   2   3   3   3   4   5   6   7   7   7   9   9  10  10  10  11  12  13  
 LCS     135       F    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   8   9  10  10  10  11  12  13  
 LCS     136       D    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     137       E    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     138       A    13   17   28       H        1   2   2   3   3   3   4   5   6   7   7   7   8   8   8   9  10  11  12  13  
 LCS     139       K    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     140       A    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     141       K    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     142       A    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     143       I    13   17   28       C        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     144       E    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     145       L    13   17   28       H        1   2   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     146       S    13   17   28       H        0   1   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     147       Q    10   17   28       H        0   1   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     148       Q     4   17   28       H        0   0   1   2   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     149       Q     4   17   28       H        0   0   0   1   2   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     150       G     4   17   28       C        0   0   0   1   1   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     151       F     4    7   28       C        0   0   0   1   1   2   4   4   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     152       T     3    7   28       C        0   0   2   3   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     153       W     5    7   28       E        0   0   1   1   1   2   3   4   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     154       V     5    7   28       C        0   0   1   2   3   3   4   5   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     155       P     5    7   28       C        0   0   1   2   3   3   4   4   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     156       P     5    7   28       C        0   0   1   1   3   3   4   4   5   6   6   7   7   8   8   9  10  11  12  13  
 LCS     157       F     5    6   28       C        0   0   1   1   1   1   2   2   2   3   4   5   5   7   8   8   8   9  10  11  
 LCS     158       D     3    6   28       C        0   0   1   1   1   2   2   2   3   3   4   4   5   7   8   9  10  11  12  13  
 LCS     159       H     3    6   28       C        0   0   1   1   1   2   2   2   2   3   4   4   4   5   6   6   8  11  11  13  
 LCS     160       P     3    6   28       H        0   0   1   1   1   2   3   3   3   4   4   4   4   5   6   6   7   8   9   9  
 LCS     161       M     3    6   29       H        0   0   1   1   1   1   1   2   3   3   4   4   4   4   5   5   5   5   6   7  
 LCS     162       V     3    6   29       H        0   0   0   1   1   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6  
 LCS     163       I     3   16   29       H        0   0   0   1   2   2   3   3   4   4   5   5   5   5   5   5   5   5   6   6  
 LCS     164       A    15   16   29       H        1   1   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     165       G    15   16   29       H        1   1   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     166       Q    15   16   29       H        1   1   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     167       G    15   16   29       H        1   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     168       T    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     169       L    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     170       A    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     171       L    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     172       E    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     173       L    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     174       L    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     175       Q    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     176       Q    15   16   29       H        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     177       D    15   16   29       C        2   2   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     178       A    15   16   29       C        0   1   2   3   3   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     179       H     3   16   29       C        0   0   0   1   2   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     180       L     3   10   29       C        0   0   0   0   2   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     181       D     6   10   29       C        0   1   1   1   2   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     182       R     6   10   29       E        0   1   1   1   2   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     183       V     6   10   29       E        0   1   1   1   2   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     184       F     6   10   29       E        0   1   1   1   2   3   3   3   4   4   5   5   5   5   5   5   5   5   5   6  
 LCS     185       V     6   10   29       E        0   1   1   1   2   3   3   3   4   4   5   5   5   5   5   5   5   5   7   8  
 LCS     186       P     6   10   29       E        0   1   1   1   2   3   3   3   4   4   5   5   5   6   7   8   8   9   9  10  
 LCS     187       V     6   10   29       C        0   1   1   1   2   3   3   3   4   4   5   7   7   8   8   8   9   9  10  11  
 LCS     188       G     3   10   29       C        0   2   2   3   3   3   4   5   5   6   6   7   7   8   8   8   9   9  10  10  
 LCS     189       G     3    9   29       C        0   0   0   0   2   3   3   3   4   5   6   7   7   8   8   8   9   9  10  11  
 LCS    BREAK 
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.49 
 
 NUMBER_OF_CA_Tg:  493      NUMBER_OF_CA_Pr:  140      PERCENT_OF_CA:  28.40  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      12      19      23      24      27      32      36      40      43      45      49      50      51      53      53      54      57      63      69  
 GDT PERCENT_OF_CA_Pr    7.14    8.57   13.57   16.43   17.14   19.29   22.86   25.71   28.57   30.71   32.14   35.00   35.71   36.43   37.86   37.86   38.57   40.71   45.00   49.29 
 GDT PERCENT_OF_CA_Tg    2.03    2.43    3.85    4.67    4.87    5.48    6.49    7.30    8.11    8.72    9.13    9.94   10.14   10.34   10.75   10.75   10.95   11.56   12.78   14.00 
 GDT FRAGMENT: Beg-End 168-177  92-110  82-109  81-109  65-109  65-110  65-110  64-110  64-111  62-111  62-110  62-111  62-111  62-112  61-113  61-113  60-113  55-158  55-158  55-158 
 GDT RMS_LOCAL           0.23    0.51    1.00    1.26    1.41    1.71    2.17    2.50    2.89    3.24    3.38    3.68    3.76    4.00    4.44    4.44    4.74    6.66    7.00    7.35 
 GDT RMS_ALL_CA         36.58   26.32   24.79   25.03   25.15   25.39   25.31   25.16   25.22   25.08   24.80   24.84   24.92   25.00   24.90   24.90   24.89   21.34   21.56   21.75 
 
 
 TEST (CA)  RMS =  17.38               (Number of atoms:  140) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   17.38        140    28.4   493     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1241                            CRMSCA  
     SECONDARY STRUCTURE . .   17.06         86    34.5   249     CRMSCA  
     SURFACE . . . . . . . .   17.20         56    22.6   248     CRMSCA  
     BURIED  . . . . . . . .   17.49         84    34.3   245     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   17.35        677    28.0  2415     CRMSMC  
     SECONDARY STRUCTURE . .   17.08        419    34.1  1230     CRMSMC  
     SURFACE . . . . . . . .   17.37        270    22.3  1209     CRMSMC  
     BURIED  . . . . . . . .   17.34        407    33.7  1206     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   17.52        117     7.2  1617     CRMSSC  
     RELIABLE SIDE CHAINS  .   17.52        117     8.8  1329     CRMSSC  
     SECONDARY STRUCTURE . .   17.00         75     8.4   891     CRMSSC  
     SURFACE . . . . . . . .   17.83         46     5.3   869     CRMSSC  
     BURIED  . . . . . . . .   17.32         71     9.5   748     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   17.35        677    18.9  3589     CRMSALL 
     SECONDARY STRUCTURE . .   17.08        419    22.2  1887     CRMSALL 
     SURFACE . . . . . . . .   17.37        270    14.5  1861     CRMSALL 
     BURIED  . . . . . . . .   17.34        407    23.6  1728     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.318      1.000       0.500    140    28.4   493     ERRCA  
     SECONDARY STRUCTURE . .   16.102      1.000       0.500     86    34.5   249     ERRCA  
     SURFACE . . . . . . . .   15.963      1.000       0.500     56    22.6   248     ERRCA  
     BURIED  . . . . . . . .   16.555      1.000       0.500     84    34.3   245     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.285      1.000       0.500    677    28.0  2415     ERRMC  
     SECONDARY STRUCTURE . .   16.106      1.000       0.500    419    34.1  1230     ERRMC  
     SURFACE . . . . . . . .   16.116      1.000       0.500    270    22.3  1209     ERRMC  
     BURIED  . . . . . . . .   16.397      1.000       0.500    407    33.7  1206     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.345      1.000       0.500    117     7.2  1617     ERRSC  
     RELIABLE SIDE CHAINS  .   16.345      1.000       0.500    117     8.8  1329     ERRSC  
     SECONDARY STRUCTURE . .   15.907      1.000       0.500     75     8.4   891     ERRSC  
     SURFACE . . . . . . . .   16.505      1.000       0.500     46     5.3   869     ERRSC  
     BURIED  . . . . . . . .   16.242      1.000       0.500     71     9.5   748     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.285      1.000       0.500    677    18.9  3589     ERRALL 
     SECONDARY STRUCTURE . .   16.106      1.000       0.500    419    22.2  1887     ERRALL 
     SURFACE . . . . . . . .   16.116      1.000       0.500    270    14.5  1861     ERRALL 
     BURIED  . . . . . . . .   16.397      1.000       0.500    407    23.6  1728     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         0        20     140     493   DISTCA 
CA  (P)      0.00      0.00      0.00      0.00      4.06             493   DISTCA 
CA  (RMS)    0.00      0.00      0.00      0.00      8.09                   DISTCA 
 
ALL (N)         0         0         0         2       111     677    3589   DISTALL 
ALL (P)      0.00      0.00      0.00      0.06      3.09            3589   DISTALL 
ALL (RMS)    0.00      0.00      0.00      3.68      8.24                   DISTALL 
 
 
 
 
END of the results output 
