 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 98 , MODEL 98 , TARGET 493 
#          The number of residues possible to evaluate: 98 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   384     R     E     C             1.00 
 SSP   385     L     C     H             1.00 
 SSP   386     S     C     H             1.00 
 SSP   387     R     C     H             1.00 
 SSP   388     G     C     H             1.00 
 SSP   389     L     H     H             1.00 
 SSP   390     E     H     H             1.00 
 SSP   391     E     H     H             1.00 
 SSP   392     R     H     H             1.00 
 SSP   393     K     H     H             1.00 
 SSP   394     E     H     H             1.00 
 SSP   395     I     H     H             1.00 
 SSP   396     L     H     H             1.00 
 SSP   397     Q     H     H             1.00 
 SSP   398     M     H     H             1.00 
 SSP   399     L     H     H             1.00 
 SSP   400     N     C     H             1.00 
 SSP   401     D     C     H             1.00 
 SSP   402     G     C     H             1.00 
 SSP   403     G     C     C             1.00 
 SSP   404     Y     C     C             1.00 
 SSP   405     S     E     E             1.00 
 SSP   406     V     E     E             1.00 
 SSP   407     V     C     E             1.00 
 SSP   408     D     C     E             1.00 
 SSP   409     L     C     E             1.00 
 SSP   410     S     C     C             1.00 
 SSP   411     D     C     C             1.00 
 SSP   412     D     C     C             1.00 
 SSP   413     E     C     C             1.00 
 SSP   414     M     C     C             1.00 
 SSP   415     A     C     C             1.00 
 SSP   416     K     C     H             1.00 
 SSP   417     L     C     H             1.00 
 SSP   418     H     C     H             1.00 
 SSP   419     V     H     H             1.00 
 SSP   420     R     H     H             1.00 
 SSP   421     Y     H     H             1.00 
 SSP   422     M     C     H             1.00 
 SSP   423     V     C     H             1.00 
 SSP   424     G     C     H             1.00 
 SSP   425     G     C     C             1.00 
 SSP  BREAK 
 SSP   433     E     C     C             1.00 
 SSP   434     R     E     C             1.00 
 SSP   435     L     E     C             1.00 
 SSP   436     Y     E     E             1.00 
 SSP   437     S     E     E             1.00 
 SSP   438     F     E     E             1.00 
 SSP   439     E     C     C             1.00 
 SSP   440     F     C     C             1.00 
 SSP   441     P     C     C             1.00 
 SSP   442     E     C     C             1.00 
 SSP   443     S     C     C             1.00 
 SSP   444     P     C     C             1.00 
 SSP   445     G     C     C             1.00 
 SSP   446     A     H     H             1.00 
 SSP   447     L     H     H             1.00 
 SSP   448     L     H     H             1.00 
 SSP   449     R     H     H             1.00 
 SSP   450     F     H     H             1.00 
 SSP   451     L     H     H             1.00 
 SSP   452     N     H     H             1.00 
 SSP   453     T     H     H             1.00 
 SSP   454     L     H     H             1.00 
 SSP   455     G     C     H             1.00 
 SSP   456     T     C     H             1.00 
 SSP   457     Y     C     C             1.00 
 SSP   458     W     C     C             1.00 
 SSP   459     N     C     C             1.00 
 SSP   460     I     C     C             1.00 
 SSP   461     S     C     E             1.00 
 SSP   462     L     E     E             1.00 
 SSP   463     F     E     E             1.00 
 SSP   464     H     E     E             1.00 
 SSP   465     Y     E     E             1.00 
 SSP   466     R     E     C             1.00 
 SSP   467     S     C     C             1.00 
 SSP   468     H     C     C             1.00 
 SSP  BREAK 
 SSP   470     T     C     C             1.00 
 SSP   471     D     C     C             1.00 
 SSP   472     Y     C     H             1.00 
 SSP   473     G     C     H             1.00 
 SSP   474     R     C     H             1.00 
 SSP   475     V     E     H             1.00 
 SSP   476     L     E     H             1.00 
 SSP   477     A     E     H             1.00 
 SSP   478     A     E     H             1.00 
 SSP   479     F     E     H             1.00 
 SSP   480     E     C     H             1.00 
 SSP   481     L     C     H             1.00 
 SSP   482     G     C     C             1.00 
 SSP  BREAK 
 SSP   508     F     H     C             1.00 
 SSP   509     R     H     E             1.00 
 SSP   510     F     H     E             1.00 
 SSP   511     F     H     E             1.00 
 SSP   512     L     C     E             1.00 
 SSP   513     A     C     C             1.00 
 SSP   514     G     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              61.2      85.2     50.0     52.8     19.9 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        67.0      74.5     56.7     66.7     19.9 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            9              66.7              22.2 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      98    100.0     61.2 
 
 BIN  0.00 - 1.00      1.00      98    100.0     61.2 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          94              94            97            489 
 ALL CONTACTS (< 8.0A)     425             313           448           2555 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       425        197   46.35   62.94    7.71       0     0.00         313      2555  |   1-9999 
 RES CONTACTS       243        193   79.42   85.78   14.58       0     0.00         225      1324  |   1-4    
 RES CONTACTS        10          1   10.00    6.67    0.83       0     0.00          15       121  |   5-8    
 RES CONTACTS       172          3    1.74    4.11    0.27       0     0.00          73      1110  |   9-9999 
 
 
 
# WARNING! TARGET 3589 atoms, MODEL 3613 atoms, 3307 common with TARGET 
           Number of atoms possible to evaluate: 476 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    75.76           42.6   176    17.9   981     ARMSMC  
     SECONDARY STRUCTURE . .    58.04           69.0    71    14.3   497     ARMSMC  
     SURFACE . . . . . . . .    74.37           40.0   105    21.3   493     ARMSMC  
     BURIED  . . . . . . . .    77.77           46.5    71    14.5   488     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   339     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   303     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   187     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   174     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   165     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   262     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   186     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   145     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   150     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    93     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    56     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    65     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  384 - 425  42   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    32    384 - 415      4.82    11.33 
  LONGEST_CONTINUOUS_SEGMENT    32    385 - 416      4.93    11.09 
  LCS LOCAL_SCORE:             72.05 
 
 FRAGMENT  2  433 - 468  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    33    436 - 468      4.93     5.26 
  LCS LOCAL_SCORE:             87.89 
 
 FRAGMENT  3  470 - 482  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    470 - 480      4.99     6.25 
  LCS LOCAL_SCORE:             82.25 
 
 FRAGMENT  4  508 - 514  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    508 - 514      4.77     4.77 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  384 - 425  42   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19    387 - 405      1.96    11.60 
  LCS LOCAL_SCORE:             32.26 
 
 FRAGMENT  2  433 - 468  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    444 - 455      1.59     7.62 
  LONGEST_CONTINUOUS_SEGMENT    12    445 - 456      1.68     6.73 
  LCS LOCAL_SCORE:             24.61 
 
 FRAGMENT  3  470 - 482  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    470 - 474      0.96    14.46 
  LCS LOCAL_SCORE:             32.54 
 
 FRAGMENT  4  508 - 514  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    511 - 514      2.00     7.16 
  LCS LOCAL_SCORE:             51.02 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  384 - 425  42   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17    387 - 403      0.91    11.73 
  LCS LOCAL_SCORE:             24.38 
 
 FRAGMENT  2  433 - 468  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    445 - 455      0.43     7.05 
  LCS LOCAL_SCORE:             17.75 
 
 FRAGMENT  3  470 - 482  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    470 - 474      0.96    14.46 
  LCS LOCAL_SCORE:             28.99 
 
 FRAGMENT  4  508 - 514  7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    508 - 510      0.64    10.14 
  LONGEST_CONTINUOUS_SEGMENT     3    509 - 511      0.34     8.17 
  LONGEST_CONTINUOUS_SEGMENT     3    511 - 513      0.12     7.99 
  LONGEST_CONTINUOUS_SEGMENT     3    512 - 514      0.85     8.30 
  LCS LOCAL_SCORE:             42.86 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     384       R     3    3   32       E        0   0   0   0   0   1   1   1   1   2   3   4   4   5   5   5   6   7   8   8  
 LCS     385       L     4    4   32       C        0   0   0   0   0   1   1   1   2   3   4   4   4   5   5   6   6   7   8   8  
 LCS     386       S     4   18   32       C        0   0   0   0   1   1   2   2   3   4   5   5   5   5   5   6   6   7   8   8  
 LCS     387       R    17   19   32       C        0   1   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     388       G    17   19   32       C        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     389       L    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     390       E    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     391       E    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     392       R    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     393       K    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     394       E    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     395       I    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     396       L    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     397       Q    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     398       M    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     399       L    17   19   32       H        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     400       N    17   19   32       C        1   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     401       D    17   19   32       C        0   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     402       G    17   19   32       C        0   1   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     403       G    17   19   32       C        0   2   3   3   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     404       Y     6   19   32       C        0   1   1   2   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     405       S     6   19   32       E        0   1   1   2   3   3   4   4   4   5   5   5   5   5   5   6   6   7   8   8  
 LCS     406       V     6   11   32       E        0   1   1   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   7  
 LCS     407       V     6   11   32       C        0   1   1   2   3   3   4   4   4   5   5   5   5   5   5   5   6   7   7   8  
 LCS     408       D     6    9   32       C        0   1   1   2   2   3   4   4   4   5   5   5   5   5   5   5   6   6   6   8  
 LCS     409       L     6    8   32       C        0   0   1   2   3   3   4   4   4   5   5   5   5   5   5   6   6   7   7   8  
 LCS     410       S     3    8   32       C        0   0   0   1   1   2   3   4   4   5   5   5   5   5   5   5   6   7   7   8  
 LCS     411       D     3    8   32       C        0   0   1   1   2   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     412       D     4    4   32       C        0   0   0   1   1   1   2   3   4   4   5   5   5   5   5   5   6   6   6   6  
 LCS     413       E     4    4   32       C        0   0   0   1   1   2   3   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     414       M     4   10   32       C        0   0   0   1   1   1   2   3   4   4   5   5   5   5   5   6   6   7   7   8  
 LCS     415       A     4   10   32       C        0   0   0   1   1   2   2   2   3   4   4   5   5   5   5   6   6   7   8   8  
 LCS     416       K     8   10   32       C        0   1   1   1   1   2   2   2   3   4   4   4   5   5   5   6   6   7   8   8  
 LCS     417       L     8   10   31       C        0   0   1   1   1   2   2   2   3   3   4   4   4   5   5   6   6   7   8   8  
 LCS     418       H     8   10   23       C        1   1   1   1   1   2   2   2   2   2   3   3   4   4   5   6   6   7   8   8  
 LCS     419       V     8   10   23       H        0   1   1   1   1   2   2   2   2   3   3   4   4   5   5   6   6   7   8   8  
 LCS     420       R     8   10   23       H        1   1   1   1   1   2   2   2   3   3   3   4   4   5   5   6   6   7   7   8  
 LCS     421       Y     8   10   23       H        1   1   1   1   1   2   2   2   2   2   3   3   4   4   5   6   6   7   7   8  
 LCS     422       M     8   10   23       C        1   1   1   1   1   2   2   2   2   2   3   3   4   4   4   6   6   7   7   8  
 LCS     423       V     8   10   23       C        1   1   1   1   1   2   2   2   3   3   3   4   4   5   5   6   6   7   7   8  
 LCS     424       G     4   10   23       C        0   0   0   1   1   1   2   2   2   3   3   3   4   4   4   6   6   6   7   8  
 LCS     425       G     4   10   23       C        0   0   0   0   1   1   2   2   2   2   2   3   4   4   4   6   7   7   7   8  
 LCS     426       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     427       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     428       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     429       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     430       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     431       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     432       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     433       E     4    6   12       C        0   0   1   1   1   1   2   2   3   4   5   5   6   6   6   7   7   8   8   8  
 LCS     434       R     4    7   12       E        0   0   0   1   1   1   2   2   3   4   5   5   6   6   6   7   7   8   8   8  
 LCS     435       L     6    7   26       E        0   1   1   1   1   1   1   1   2   3   4   5   5   5   6   7   7   8   8   8  
 LCS     436       Y     6    7   33       E        0   1   1   1   1   1   2   2   3   4   4   5   6   6   6   7   7   8   8   8  
 LCS     437       S     6    7   33       E        0   1   1   1   1   2   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     438       F     6    7   33       E        0   1   1   1   1   1   1   3   3   4   5   5   6   6   6   7   7   8   8   8  
 LCS     439       E     6    7   33       C        0   1   1   1   1   1   1   2   3   4   5   5   6   6   6   7   7   8   8   8  
 LCS     440       F     6    7   33       C        0   1   1   1   1   1   1   1   1   2   3   3   5   5   6   7   7   8   8   8  
 LCS     441       P     3    7   33       C        0   0   0   0   1   1   1   1   1   3   3   4   5   6   6   7   7   8   8   8  
 LCS     442       E     3    4   33       C        0   0   0   0   0   1   1   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     443       S     3    4   33       C        0   0   0   0   0   1   2   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     444       P     3   12   33       C        0   0   0   0   1   2   2   3   4   4   4   5   6   6   6   7   7   8   8   8  
 LCS     445       G    11   12   33       C        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     446       A    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     447       L    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     448       L    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     449       R    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     450       F    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     451       L    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     452       N    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     453       T    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     454       L    11   12   33       H        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     455       G    11   12   33       C        1   2   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     456       T     3   12   33       C        0   0   0   1   1   2   2   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     457       Y     3    3   33       C        0   0   0   0   0   1   2   2   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     458       W     5    6   33       C        0   0   2   2   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     459       N     5    9   33       C        0   0   1   1   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     460       I     5    9   33       C        0   0   1   1   2   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     461       S     5    9   33       C        0   1   1   1   1   2   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     462       L     5    9   33       E        0   1   1   1   1   2   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     463       F     5    9   33       E        0   1   1   1   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     464       H     5    9   33       E        0   1   1   1   3   3   3   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     465       Y     5    9   33       E        0   1   1   1   1   1   2   2   2   4   5   5   6   6   6   7   7   8   8   8  
 LCS     466       R     4    9   33       E        0   0   1   1   1   1   2   2   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     467       S     3    9   33       C        0   0   1   1   1   1   2   3   3   4   5   5   6   6   6   7   7   8   8   8  
 LCS     468       H     0    3   33       C        0   0   0   0   2   2   2   3   4   4   5   5   6   6   6   7   7   8   8   8  
 LCS     469       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     470       T     5    5   11       C        0   0   1   1   3   3   3   3   3   4   5   5   6   6   6   7   7   8   8   8  
 LCS     471       D     5    5   11       C        0   0   1   1   1   1   1   1   1   2   2   4   4   5   5   6   6   7   8   8  
 LCS     472       Y     5    5   11       C        0   0   1   1   1   1   1   1   1   2   2   2   3   3   3   3   3   6   7   8  
 LCS     473       G     5    5   11       C        0   0   1   1   1   1   1   1   1   2   2   2   3   3   3   3   3   3   4   8  
 LCS     474       R     5    5   11       C        0   0   1   1   1   1   1   3   3   4   4   4   5   5   5   6   6   7   8   8  
 LCS     475       V     3    4   11       E        0   0   0   0   0   1   1   1   3   4   4   4   5   5   5   6   6   7   8   8  
 LCS     476       L     3    4   11       E        0   0   0   0   0   0   0   1   1   2   2   2   2   2   4   6   6   7   8   8  
 LCS     477       A     3    3   11       E        0   0   0   0   0   0   0   1   1   1   4   4   5   5   5   6   6   7   8   8  
 LCS     478       A     3    3   11       E        0   0   0   0   0   0   1   1   3   4   4   4   5   5   5   6   6   7   8   8  
 LCS     479       F     3    4   11       E        0   0   0   0   1   1   1   1   1   1   2   2   2   3   3   6   6   7   8   8  
 LCS     480       E     3    4   11       C        0   0   0   0   0   0   1   1   1   1   2   2   2   3   3   4   4   4   4   5  
 LCS     481       L     3    4    9       C        0   0   0   0   0   0   1   1   1   1   1   1   2   3   3   3   4   4   8   8  
 LCS     482       G     3    4    9       C        0   0   0   0   0   0   1   1   1   1   1   1   2   3   3   3   4   4   4   5  
 LCS    BREAK 
 LCS     496       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     497       Y     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     498       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     499       C     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     500       H     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     501       D     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     502       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     503       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     504       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     505       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     506       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     507       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     508       F     3    3    7       H        0   0   0   0   0   0   0   0   1   1   1   1   2   3   3   3   4   4   4   5  
 LCS     509       R     3    3    7       H        0   0   0   0   0   0   0   0   1   1   1   1   2   3   3   4   4   4   4   5  
 LCS     510       F     3    3    7       H        0   0   0   0   0   0   0   0   1   1   1   1   2   3   3   4   4   4   6   6  
 LCS     511       F     3    4    7       H        0   0   0   0   0   0   0   1   1   2   3   3   4   5   5   6   7   8   8   8  
 LCS     512       L     3    4    7       C        0   0   0   0   0   0   2   2   3   3   4   4   5   6   6   7   7   8   8   8  
 LCS     513       A     3    4    7       C        0   0   0   0   0   0   0   0   1   3   4   4   4   5   6   6   7   8   8   8  
 LCS     514       G     3    4    7       C        0   0   0   0   0   0   0   0   1   1   1   1   1   3   4   4   4   6   6   6  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.30 
 
 NUMBER_OF_CA_Tg:  493      NUMBER_OF_CA_Pr:   98      PERCENT_OF_CA:  19.88  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      14      16      17      18      19      21      22      24      25      27      29      31      33      34      36      39      40      41      43  
 GDT PERCENT_OF_CA_Pr    9.18   14.29   16.33   17.35   18.37   19.39   21.43   22.45   24.49   25.51   27.55   29.59   31.63   33.67   34.69   36.73   39.80   40.82   41.84   43.88 
 GDT PERCENT_OF_CA_Tg    1.83    2.84    3.25    3.45    3.65    3.85    4.26    4.46    4.87    5.07    5.48    5.88    6.29    6.69    6.90    7.30    7.91    8.11    8.32    8.72 
 GDT FRAGMENT: Beg-End 388-396 388-401 388-403 387-403 387-470 389-409 387-407 387-409 387-411 387-411 437-468 437-468 433-468 433-470 433-470 433-512 433-513 433-513 433-513 391-475 
 GDT RMS_LOCAL           0.23    0.59    0.80    0.91    1.27    2.17    2.39    2.49    2.74    2.86    4.18    4.38    4.58    4.79    4.92    5.21    5.57    5.69    5.95    7.20 
 GDT RMS_ALL_CA         18.65   18.37   18.79   18.78   18.68   24.31   23.45   23.54   24.22   24.44   18.67   18.82   18.66   18.85   18.84   19.38   19.68   19.99   20.32   14.99 
 
 
 TEST (CA)  RMS =  14.23               (Number of atoms:   98) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.23         98    19.9   493     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1452                            CRMSCA  
     SECONDARY STRUCTURE . .   14.18         40    16.1   249     CRMSCA  
     SURFACE . . . . . . . .   15.00         60    24.2   248     CRMSCA  
     BURIED  . . . . . . . .   12.92         38    15.5   245     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.25        476    19.7  2415     CRMSMC  
     SECONDARY STRUCTURE . .   14.21        199    16.2  1230     CRMSMC  
     SURFACE . . . . . . . .   14.96        289    23.9  1209     CRMSMC  
     BURIED  . . . . . . . .   13.07        187    15.5  1206     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   14.61         84     5.2  1617     CRMSSC  
     RELIABLE SIDE CHAINS  .   14.61         84     6.3  1329     CRMSSC  
     SECONDARY STRUCTURE . .   14.68         39     4.4   891     CRMSSC  
     SURFACE . . . . . . . .   15.60         49     5.6   869     CRMSSC  
     BURIED  . . . . . . . .   13.10         35     4.7   748     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   14.25        476    13.3  3589     CRMSALL 
     SECONDARY STRUCTURE . .   14.21        199    10.5  1887     CRMSALL 
     SURFACE . . . . . . . .   14.96        289    15.5  1861     CRMSALL 
     BURIED  . . . . . . . .   13.07        187    10.8  1728     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.902      1.000       0.500     98    19.9   493     ERRCA  
     SECONDARY STRUCTURE . .   12.942      1.000       0.500     40    16.1   249     ERRCA  
     SURFACE . . . . . . . .   13.483      1.000       0.500     60    24.2   248     ERRCA  
     BURIED  . . . . . . . .   11.986      1.000       0.500     38    15.5   245     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.923      1.000       0.500    476    19.7  2415     ERRMC  
     SECONDARY STRUCTURE . .   12.969      1.000       0.500    199    16.2  1230     ERRMC  
     SURFACE . . . . . . . .   13.481      1.000       0.500    289    23.9  1209     ERRMC  
     BURIED  . . . . . . . .   12.061      1.000       0.500    187    15.5  1206     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.331      1.000       0.500     84     5.2  1617     ERRSC  
     RELIABLE SIDE CHAINS  .   13.331      1.000       0.500     84     6.3  1329     ERRSC  
     SECONDARY STRUCTURE . .   13.385      1.000       0.500     39     4.4   891     ERRSC  
     SURFACE . . . . . . . .   14.153      1.000       0.500     49     5.6   869     ERRSC  
     BURIED  . . . . . . . .   12.181      1.000       0.500     35     4.7   748     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.923      1.000       0.500    476    13.3  3589     ERRALL 
     SECONDARY STRUCTURE . .   12.969      1.000       0.500    199    10.5  1887     ERRALL 
     SURFACE . . . . . . . .   13.481      1.000       0.500    289    15.5  1861     ERRALL 
     BURIED  . . . . . . . .   12.061      1.000       0.500    187    10.8  1728     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         6        36      98     493   DISTCA 
CA  (P)      0.00      0.00      0.00      1.22      7.30             493   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.49      7.60                   DISTCA 
 
ALL (N)         0         0         3        18       170     476    3589   DISTALL 
ALL (P)      0.00      0.00      0.08      0.50      4.74            3589   DISTALL 
ALL (RMS)    0.00      0.00      2.50      4.15      7.58                   DISTALL 
 
 
 
 
END of the results output 
