 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 97 , MODEL 97 , TARGET 493 
#          The number of residues possible to evaluate: 97 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   403     G     C     C             1.00 
 SSP   404     Y     C     C             1.00 
 SSP   405     S     E     C             1.00 
 SSP   406     V     E     E             1.00 
 SSP   407     V     C     E             1.00 
 SSP   408     D     C     E             1.00 
 SSP   409     L     C     E             1.00 
 SSP   410     S     C     C             1.00 
 SSP   411     D     C     C             1.00 
 SSP   412     D     C     E             1.00 
 SSP   413     E     C     C             1.00 
 SSP   414     M     C     C             1.00 
 SSP   415     A     C     E             1.00 
 SSP   416     K     C     C             1.00 
 SSP   417     L     C     C             1.00 
 SSP   418     H     C     C             1.00 
 SSP   419     V     H     C             1.00 
 SSP   420     R     H     C             1.00 
 SSP   421     Y     H     E             1.00 
 SSP   422     M     C     E             1.00 
 SSP   423     V     C     E             1.00 
 SSP   424     G     C     E             1.00 
 SSP   425     G     C     E             1.00 
 SSP   426     R     C     E             1.00 
 SSP   427     P     C     E             1.00 
 SSP   428     S     C     C             1.00 
 SSP   429     H     C     C             1.00 
 SSP   430     P     C     C             1.00 
 SSP   431     L     C     C             1.00 
 SSP  BREAK 
 SSP   434     R     E     C             1.00 
 SSP   435     L     E     C             1.00 
 SSP   436     Y     E     E             1.00 
 SSP   437     S     E     E             1.00 
 SSP   438     F     E     E             1.00 
 SSP   439     E     C     E             1.00 
 SSP   440     F     C     C             1.00 
 SSP   441     P     C     C             1.00 
 SSP   442     E     C     C             1.00 
 SSP   443     S     C     C             1.00 
 SSP   444     P     C     C             1.00 
 SSP   445     G     C     E             1.00 
 SSP   446     A     H     E             1.00 
 SSP   447     L     H     E             1.00 
 SSP   448     L     H     E             1.00 
 SSP   449     R     H     E             1.00 
 SSP   450     F     H     E             1.00 
 SSP   451     L     H     C             1.00 
 SSP   452     N     H     C             1.00 
 SSP   453     T     H     C             1.00 
 SSP   454     L     H     C             1.00 
 SSP   455     G     C     E             1.00 
 SSP   456     T     C     E             1.00 
 SSP   457     Y     C     C             1.00 
 SSP   458     W     C     C             1.00 
 SSP   459     N     C     C             1.00 
 SSP   460     I     C     C             1.00 
 SSP   461     S     C     C             1.00 
 SSP   462     L     E     C             1.00 
 SSP   463     F     E     E             1.00 
 SSP   464     H     E     E             1.00 
 SSP   465     Y     E     E             1.00 
 SSP   466     R     E     E             1.00 
 SSP   467     S     C     E             1.00 
 SSP   468     H     C     E             1.00 
 SSP   469     G     C     C             1.00 
 SSP   470     T     C     C             1.00 
 SSP   471     D     C     E             1.00 
 SSP   472     Y     C     E             1.00 
 SSP   473     G     C     E             1.00 
 SSP   474     R     C     E             1.00 
 SSP   475     V     E     E             1.00 
 SSP   476     L     E     E             1.00 
 SSP   477     A     E     C             1.00 
 SSP   478     A     E     C             1.00 
 SSP   479     F     E     C             1.00 
 SSP   480     E     C     C             1.00 
 SSP   481     L     C     C             1.00 
 SSP   482     G     C     C             1.00 
 SSP  BREAK 
 SSP   496     G     C     C             1.00 
 SSP   497     Y     C     C             1.00 
 SSP   498     D     C     C             1.00 
 SSP   499     C     E     C             1.00 
 SSP   500     H     E     C             1.00 
 SSP   501     D     E     C             1.00 
 SSP   502     E     C     C             1.00 
 SSP   503     T     C     C             1.00 
 SSP   504     N     C     E             1.00 
 SSP   505     N     C     C             1.00 
 SSP   506     P     H     C             1.00 
 SSP   507     A     H     E             1.00 
 SSP   508     F     H     C             1.00 
 SSP   509     R     H     C             1.00 
 SSP   510     F     H     C             1.00 
 SSP   511     F     H     C             1.00 
 SSP   512     L     C     C             1.00 
 SSP   513     A     C     C             1.00 
 SSP   514     G     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              48.5       0.0     50.0     62.7     19.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        44.1       0.0     57.4     50.2     19.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8              50.0              37.5 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      97    100.0     48.5 
 
 BIN  0.00 - 1.00      1.00      97    100.0     48.5 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          89              89           101            489 
 ALL CONTACTS (< 8.0A)     335             298           433           2555 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       335        146   43.58   48.99    5.71       0     0.00         298      2555  |   1-9999 
 RES CONTACTS       161        138   85.71   73.02   10.42       0     0.00         189      1324  |   1-4    
 RES CONTACTS        22          1    4.55    7.69    0.83       0     0.00          13       121  |   5-8    
 RES CONTACTS       152          7    4.61    7.29    0.63       0     0.00          96      1110  |   9-9999 
 
 
 
# WARNING! TARGET 3589 atoms, MODEL 3590 atoms, 3319 common with TARGET 
           Number of atoms possible to evaluate: 467 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    85.89           38.4   164    16.7   981     ARMSMC  
     SECONDARY STRUCTURE . .    83.96           44.2    52    10.5   497     ARMSMC  
     SURFACE . . . . . . . .    90.58           33.0   106    21.5   493     ARMSMC  
     BURIED  . . . . . . . .    76.57           48.3    58    11.9   488     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   339     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   303     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   187     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   174     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   165     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   262     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   186     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   145     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   150     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    93     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    56     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    65     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  403 - 431  29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    412 - 431      4.82    11.56 
  LCS LOCAL_SCORE:             62.66 
 
 FRAGMENT  2  434 - 514  68   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    27    456 - 482      4.95    13.04 
  LCS LOCAL_SCORE:             31.36 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  403 - 431  29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    423 - 431      1.77    11.56 
  LCS LOCAL_SCORE:             25.68 
 
 FRAGMENT  2  434 - 514  68   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    434 - 442      1.77    22.01 
  LONGEST_CONTINUOUS_SEGMENT     9    460 - 468      1.71    12.89 
  LCS LOCAL_SCORE:             10.36 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  403 - 431  29   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    403 - 409      0.98    18.39 
  LONGEST_CONTINUOUS_SEGMENT     7    425 - 431      0.94    12.80 
  LCS LOCAL_SCORE:             18.31 
 
 FRAGMENT  2  434 - 514  68   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    462 - 468      0.90    18.55 
  LCS LOCAL_SCORE:              6.66 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     403       G     7    8   13       C        0   1   1   1   1   1   1   2   2   2   2   2   2   3   3   4   4   4   4   4  
 LCS     404       Y     7    8   13       C        0   1   1   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   4  
 LCS     405       S     7    8   13       E        0   1   1   1   1   1   1   2   2   2   2   2   2   3   3   4   4   4   4   4  
 LCS     406       V     7    8   13       E        0   1   1   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   4  
 LCS     407       V     7    8   15       C        0   1   1   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   4  
 LCS     408       D     7    8   15       C        0   1   1   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   4  
 LCS     409       L     7    8   15       C        0   0   1   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   6  
 LCS     410       S     4    8   15       C        0   0   0   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   4  
 LCS     411       D     4    6   15       C        0   0   0   1   1   1   1   2   2   2   2   2   3   3   3   4   4   4   4   4  
 LCS     412       D     4    6   20       C        0   0   0   1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4   5  
 LCS     413       E     4    6   20       C        0   0   0   1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4   5  
 LCS     414       M     4    6   20       C        0   0   0   1   1   2   2   2   3   3   3   3   3   3   3   4   4   4   5   5  
 LCS     415       A     3    5   20       C        0   0   0   0   1   1   2   2   3   3   3   3   3   3   3   4   4   4   5   5  
 LCS     416       K     4    6   20       C        0   0   0   0   1   1   2   2   3   3   3   3   3   3   3   3   4   4   5   5  
 LCS     417       L     4    6   20       C        0   0   0   0   1   1   1   2   2   3   3   3   3   3   3   4   4   4   5   5  
 LCS     418       H     4    6   20       C        0   0   0   0   1   1   1   1   1   2   2   2   3   3   3   4   4   4   4   5  
 LCS     419       V     4    6   20       H        0   0   0   0   1   1   1   1   1   2   2   2   3   3   3   4   4   4   5  10  
 LCS     420       R     3    6   20       H        0   0   0   0   1   1   1   2   3   3   3   3   3   3   3   6   8   9   9  10  
 LCS     421       Y     3    6   20       H        0   0   0   1   1   2   2   2   3   3   3   3   3   4   4   6   8   9  10  10  
 LCS     422       M     3    6   20       C        0   0   0   1   1   2   2   2   3   3   3   3   3   4   4   5   7   9  10  10  
 LCS     423       V     4    9   20       C        0   0   0   1   1   2   2   2   3   3   3   3   3   3   4   5   5   7   9  10  
 LCS     424       G     4    9   20       C        0   0   0   1   1   2   2   2   3   3   3   3   3   3   3   4   5   6   7   7  
 LCS     425       G     7    9   20       C        0   1   1   1   1   1   2   2   3   3   3   3   3   3   3   3   4   4   4   5  
 LCS     426       R     7    9   20       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   3   3   4   4   4   5  
 LCS     427       P     7    9   20       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   3   3   4   4   4   5  
 LCS     428       S     7    9   20       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   3   3   4   4   4   5  
 LCS     429       H     7    9   20       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   3   3   4   4   4   5  
 LCS     430       P     7    9   20       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   4   4   4   5   5   5  
 LCS     431       L     7    9   20       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   4   4   4   5   5   5  
 LCS     432       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     433       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     434       R     5    9   14       E        0   0   1   1   1   2   3   3   3   3   3   3   3   3   4   4   4   5   5   5  
 LCS     435       L     6    9   14       E        0   1   1   1   1   2   3   3   3   3   3   3   3   3   3   4   4   5   5   6  
 LCS     436       Y     6    9   14       E        0   1   1   1   1   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     437       S     6    9   14       E        0   1   1   1   2   2   3   3   3   4   5   5   6   7   7   8   9   9  10  10  
 LCS     438       F     6    9   14       E        0   1   1   1   1   2   3   3   3   3   4   5   5   6   7   8   9   9  10  10  
 LCS     439       E     6    9   14       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   4   5   6   7   8   9  
 LCS     440       F     6    9   14       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   4   4   5   6   7   7  
 LCS     441       P     6    9   14       C        0   1   1   1   1   2   3   3   3   3   3   3   3   3   4   4   4   5   5   5  
 LCS     442       E     6    9   14       C        0   0   1   1   1   2   3   3   3   3   3   3   3   3   4   4   4   5   5   5  
 LCS     443       S     3    5   14       C        0   0   0   0   1   1   1   1   2   2   2   2   3   3   4   4   4   5   5   5  
 LCS     444       P     3    5   14       C        0   0   0   0   1   1   1   1   2   2   2   2   3   3   4   4   4   5   5   5  
 LCS     445       G     3    5   14       C        0   0   0   0   1   1   1   2   2   2   2   3   3   3   5   5   5   5   5   6  
 LCS     446       A     3    5   14       H        0   0   0   0   1   1   1   1   2   3   3   4   4   4   5   5   5   6   7   7  
 LCS     447       L     3    5   14       H        0   0   0   0   1   1   3   3   3   4   4   5   5   5   6   6   7   8   8   9  
 LCS     448       L     3    5   14       H        0   0   0   0   1   2   3   3   3   4   4   5   5   5   6   7   8   9   9  10  
 LCS     449       R     3    5   16       H        0   0   0   0   0   1   1   2   2   3   4   4   5   6   7   8   9   9  10  10  
 LCS     450       F     3    5   17       H        0   0   0   1   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     451       L     3    6   17       H        0   0   0   1   1   1   2   2   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     452       N     4    6   17       H        0   0   0   0   1   1   2   2   3   3   3   4   5   6   7   8   9   9  10  10  
 LCS     453       T     4    8   17       H        0   0   1   1   1   1   2   2   3   3   3   4   5   6   6   8   9   9  10  10  
 LCS     454       L     4    8   19       H        0   0   1   1   2   2   2   2   3   3   3   4   5   5   6   8   9   9  10  10  
 LCS     455       G     4    8   23       C        0   0   1   1   2   2   2   2   3   3   4   5   5   7   7   8   9   9  10  10  
 LCS     456       T     5    8   27       C        0   0   1   1   1   1   2   2   3   3   4   5   6   7   7   8   9   9  10  10  
 LCS     457       Y     5    8   27       C        0   0   1   1   2   2   2   2   3   4   5   5   6   7   7   8   9   9  10  10  
 LCS     458       W     5    8   27       C        0   0   1   1   2   2   2   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     459       N     5    8   27       C        0   0   1   1   2   2   2   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     460       I     5    9   27       C        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     461       S     3    9   27       C        0   0   0   1   1   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     462       L     7    9   27       E        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     463       F     7    9   27       E        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     464       H     7    9   27       E        0   1   1   1   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     465       Y     7    9   27       E        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     466       R     7    9   27       E        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     467       S     7    9   27       C        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     468       H     7    9   27       C        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     469       G     5    8   27       C        0   0   1   1   2   2   3   3   3   4   4   5   6   7   7   8   9   9  10  10  
 LCS     470       T     5    7   27       C        0   0   1   1   1   1   2   2   3   3   4   5   5   7   7   8   9   9  10  10  
 LCS     471       D     5    7   27       C        0   0   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     472       Y     5    7   27       C        0   0   1   1   1   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     473       G     4    7   27       C        0   0   1   1   1   2   3   3   3   4   5   5   6   7   7   8   9   9  10  10  
 LCS     474       R     5    7   27       C        0   0   1   1   1   2   3   3   3   4   4   5   6   7   7   8   9   9  10  10  
 LCS     475       V     5    7   27       E        0   0   1   1   2   2   3   3   3   4   4   5   6   7   7   8   9   9  10  10  
 LCS     476       L     5    7   27       E        0   0   1   1   2   2   3   3   3   4   4   5   6   7   7   8   9   9  10  10  
 LCS     477       A     5    7   27       E        0   0   1   1   2   2   3   3   3   4   4   5   5   6   6   8   9   9  10  10  
 LCS     478       A     5    7   27       E        0   0   1   1   2   2   3   3   3   4   4   5   5   6   6   7   9   9  10  10  
 LCS     479       F     4    6   27       E        0   1   1   1   2   2   3   3   3   4   4   5   5   6   7   8   9   9  10  10  
 LCS     480       E     4    6   27       C        0   0   0   1   2   2   3   3   3   4   4   5   5   7   7   8   9   9  10  10  
 LCS     481       L     3    6   27       C        0   0   1   1   1   2   2   3   3   4   4   5   5   6   7   8   9   9  10  10  
 LCS     482       G     3    6   27       C        0   0   0   0   1   2   2   2   3   3   4   5   6   7   7   8   9   9  10  10  
 LCS    BREAK 
 LCS     496       G     3    7   13       C        0   0   0   0   0   1   1   1   1   2   2   2   2   2   3   3   4   5   6   6  
 LCS     497       Y     4    8   13       C        0   0   1   1   1   1   2   2   2   2   3   3   6   6   7   8   9   9  10  10  
 LCS     498       D     5    8   13       C        0   0   1   1   1   1   2   2   2   4   5   5   6   7   7   8   9   9  10  10  
 LCS     499       C     5    8   13       E        0   0   1   1   1   1   2   2   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     500       H     5    8   13       E        0   0   1   1   1   1   2   2   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     501       D     5    8   13       E        0   0   1   1   1   1   2   2   2   2   3   4   5   6   7   8   9   9  10  10  
 LCS     502       E     5    8   13       C        0   0   1   1   1   1   2   2   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     503       T     4    8   13       C        0   0   0   1   1   1   2   2   2   3   4   5   6   7   7   8   9   9  10  10  
 LCS     504       N     4    8   13       C        0   0   1   1   1   2   2   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     505       N     4    5   13       C        0   1   1   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     506       P     4    5   13       H        0   0   0   2   2   2   3   3   4   4   5   5   6   7   7   8   9   9  10  10  
 LCS     507       A     3    5   13       H        0   0   1   1   2   2   2   2   3   3   4   5   6   6   7   8   9   9  10  10  
 LCS     508       F     3    4   13       H        0   0   0   0   0   1   1   1   1   2   3   5   5   7   7   8   9   9  10  10  
 LCS     509       R     3    4   10       H        0   0   0   0   0   1   1   1   1   2   3   5   5   7   7   8   9   9  10  10  
 LCS     510       F     3    4   10       H        0   0   0   0   0   1   1   1   1   1   1   3   5   5   7   8   9   9  10  10  
 LCS     511       F     3    4   10       H        0   0   0   0   0   0   1   1   1   1   1   1   2   3   4   5   7   7   9   9  
 LCS     512       L     3    4   10       C        0   0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   3   3   3   4  
 LCS     513       A     3    4   10       C        0   0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   3   3   3   4  
 LCS     514       G     3    4   10       C        0   0   0   0   0   0   0   1   1   1   1   1   2   2   2   2   2   3   3   4  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.19 
 
 NUMBER_OF_CA_Tg:  493      NUMBER_OF_CA_Pr:   97      PERCENT_OF_CA:  19.68  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       4       6       8      10      11      13      15      18      20      24      25      27      31      35      38      42      46      49      51      53  
 GDT PERCENT_OF_CA_Pr    4.12    6.19    8.25   10.31   11.34   13.40   15.46   18.56   20.62   24.74   25.77   27.84   31.96   36.08   39.18   43.30   47.42   50.52   52.58   54.64 
 GDT PERCENT_OF_CA_Tg    0.81    1.22    1.62    2.03    2.23    2.64    3.04    3.65    4.06    4.87    5.07    5.48    6.29    7.10    7.71    8.52    9.33    9.94   10.34   10.75 
 GDT FRAGMENT: Beg-End 428-431 426-431 462-479 460-506 460-506 437-506 437-506 448-480 450-506 436-506 436-506 436-506 436-507 436-506 436-509 449-510 436-510 436-510 436-510 421-510 
 GDT RMS_LOCAL           0.24    0.56    1.01    1.41    1.52    1.95    2.30    2.98    3.58    3.86    3.95    4.24    4.68    5.16    5.51    6.18    6.28    6.45    6.60    6.81 
 GDT RMS_ALL_CA         19.05   18.80   23.50   19.11   19.18   19.07   19.09   21.71   19.10   19.22   19.19   19.22   19.17   19.03   18.96   19.27   19.20   19.07   18.88   18.72 
 
 
 TEST (CA)  RMS =  16.18               (Number of atoms:   97) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   16.18         97    19.7   493     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1668                            CRMSCA  
     SECONDARY STRUCTURE . .   11.69         33    13.3   249     CRMSCA  
     SURFACE . . . . . . . .   17.48         64    25.8   248     CRMSCA  
     BURIED  . . . . . . . .   13.31         33    13.5   245     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   16.15        467    19.3  2415     CRMSMC  
     SECONDARY STRUCTURE . .   11.59        162    13.2  1230     CRMSMC  
     SURFACE . . . . . . . .   17.44        305    25.2  1209     CRMSMC  
     BURIED  . . . . . . . .   13.40        162    13.4  1206     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   16.44         79     4.9  1617     CRMSSC  
     RELIABLE SIDE CHAINS  .   16.44         79     5.9  1329     CRMSSC  
     SECONDARY STRUCTURE . .   11.56         30     3.4   891     CRMSSC  
     SURFACE . . . . . . . .   17.95         49     5.6   869     CRMSSC  
     BURIED  . . . . . . . .   13.62         30     4.0   748     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.15        467    13.0  3589     CRMSALL 
     SECONDARY STRUCTURE . .   11.59        162     8.6  1887     CRMSALL 
     SURFACE . . . . . . . .   17.44        305    16.4  1861     CRMSALL 
     BURIED  . . . . . . . .   13.40        162     9.4  1728     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.726      1.000       0.500     97    19.7   493     ERRCA  
     SECONDARY STRUCTURE . .   10.734      1.000       0.500     33    13.3   249     ERRCA  
     SURFACE . . . . . . . .   16.066      1.000       0.500     64    25.8   248     ERRCA  
     BURIED  . . . . . . . .   12.128      1.000       0.500     33    13.5   245     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.681      1.000       0.500    467    19.3  2415     ERRMC  
     SECONDARY STRUCTURE . .   10.680      1.000       0.500    162    13.2  1230     ERRMC  
     SURFACE . . . . . . . .   16.017      1.000       0.500    305    25.2  1209     ERRMC  
     BURIED  . . . . . . . .   12.165      1.000       0.500    162    13.4  1206     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.894      1.000       0.500     79     4.9  1617     ERRSC  
     RELIABLE SIDE CHAINS  .   14.894      1.000       0.500     79     5.9  1329     ERRSC  
     SECONDARY STRUCTURE . .   10.791      1.000       0.500     30     3.4   891     ERRSC  
     SURFACE . . . . . . . .   16.495      1.000       0.500     49     5.6   869     ERRSC  
     BURIED  . . . . . . . .   12.280      1.000       0.500     30     4.0   748     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.681      1.000       0.500    467    13.0  3589     ERRALL 
     SECONDARY STRUCTURE . .   10.680      1.000       0.500    162     8.6  1887     ERRALL 
     SURFACE . . . . . . . .   16.017      1.000       0.500    305    16.4  1861     ERRALL 
     BURIED  . . . . . . . .   12.165      1.000       0.500    162     9.4  1728     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         2         5        28      97     493   DISTCA 
CA  (P)      0.00      0.00      0.41      1.01      5.68             493   DISTCA 
CA  (RMS)    0.00      0.00      2.45      3.66      7.53                   DISTCA 
 
ALL (N)         0         1         9        19       136     467    3589   DISTALL 
ALL (P)      0.00      0.03      0.25      0.53      3.79            3589   DISTALL 
ALL (RMS)    0.00      1.70      2.50      3.42      7.52                   DISTALL 
 
 
 
 
END of the results output 
